Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49585 Brassica carinata HOM05D008814 ORTHO05D010812 9.4e-223 776.5 393 100.0
BcaC02g09030 Brassica carinata HOM05D008814 ORTHO05D010812 2.0e-52 210.7 102 99.0
A04p09340 Brassica napus HOM05D008814 ORTHO05D010812 2.0e-52 210.7 102 99.0
BolSC28t60310H Brassica oleracea HOM05D008814 ORTHO05D010812 2.0e-52 210.7 102 99.0
BolSC28t60366H Brassica oleracea HOM05D008814 ORTHO05D010812 2.0e-52 210.7 102 99.0
BraSC48t46234Z Brassica rapa HOM05D008814 ORTHO05D010812 2.0e-52 210.7 102 99.0
C01p34890 Brassica napus HOM05D008814 ORTHO05D010812 3.1e-48 196.8 102 92.2
C01p34810 Brassica napus HOM05D008814 ORTHO05D010812 6.8e-48 195.7 102 91.2
Aa31csc464G90 Aethionema arabicum HOM05D002965 ORTHO05D011945 2.1e-44 184.1 219 55.3
GSVIVG01005452001 Vitis vinifera HOM05D008814 ORTHO05D010812 3.9e-43 179.9 105 84.8
ATMG00670 Arabidopsis thaliana HOM05D002965 ORTHO05D011945 1.1e-42 178.3 211 53.6
BraSC48t46235Z Brassica rapa HOM05D019804 ORTHO05D016577 6.2e-41 172.6 138 70.3
BraSC48t46323Z Brassica rapa HOM05D019804 ORTHO05D016577 6.2e-41 172.6 138 70.3
CAN.G1.21 Capsicum annuum HOM05D008814 ORTHO05D010812 1.2e-39 168.3 112 77.7
CAN.G960.18 Capsicum annuum HOM05D008814 ORTHO05D010812 1.5e-39 167.9 101 83.2
Solyc00g500343.1 Solanum lycopersicum HOM05D008814 ORTHO05D010812 2.9e-38 163.7 101 82.2
CAN.G1109.2 Capsicum annuum HOM05D008814 ORTHO05D010812 3.8e-38 163.3 101 80.2
Solyc08g036500.1 Solanum lycopersicum HOM05D008814 ORTHO05D010812 9.2e-37 158.7 101 79.2
C01p34900 Brassica napus HOM05D019804 ORTHO05D016577 6.0e-36 156.0 106 79.2
BolC1t03456H Brassica oleracea HOM05D019804 ORTHO05D016577 6.0e-36 156.0 106 79.2
BolSC28t60357H Brassica oleracea HOM05D002965 ORTHO05D010536 1.7e-35 154.5 172 58.1
BraSC48t46254Z Brassica rapa HOM05D002965 ORTHO05D010536 1.7e-35 154.5 172 58.1
BraSC159t45718Z Brassica rapa HOM05D002965 ORTHO05D011945 5.1e-35 152.9 106 80.2
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.9e-34 151.0 77 93.5
C01p34820 Brassica napus HOM05D019804 ORTHO05D016577 1.9e-34 151.0 106 79.2
BNapus_Darmor_BZH_scaffold_234p00050 Brassica napus HOM05D002965 ORTHO05D010536 2.4e-32 144.1 189 52.9
SHI29301 Sapria himalayana HOM05D008814 ORTHO05D010812 3.1e-32 143.7 95 75.8
Nn117s43415 Nelumbo nucifera HOM05D008814 ORTHO05D010812 1.7e-30 137.9 72 90.3
Nn1g10110 Nelumbo nucifera HOM05D008814 ORTHO05D010812 1.7e-30 137.9 72 90.3
Nn1g10192 Nelumbo nucifera HOM05D008814 ORTHO05D010812 1.7e-30 137.9 72 90.3
CsaV3_7G023800 Cucumis sativus L. HOM05D008814 ORTHO05D010812 1.4e-29 134.8 72 87.5
BraSC48t46322Z Brassica rapa HOM05D005210 ORTHO05D010286 4.2e-29 133.3 63 98.4
PGSC0003DMG400033609 Solanum tuberosum HOM05D008814 ORTHO05D010812 5.4e-29 132.9 77 84.4
Thhalv10023135m.g Eutrema salsugineum HOM05D002965 ORTHO05D010536 4.3e-26 123.2 105 69.5
SHI04841 Sapria himalayana HOM05D008814 ORTHO05D010812 2.1e-25 120.9 96 66.7
BcaC05g26886 Brassica carinata HOM05D002965 ORTHO05D011945 1.4e-24 118.2 79 83.5
Nitab4.5_0014940g0030 Nicotiana tabacum HOM05D008814 ORTHO05D010812 3.1e-24 117.1 101 64.4
Nitab4.5_0000172g1910 Nicotiana tabacum HOM05D008814 ORTHO05D010812 3.4e-23 113.6 80 67.5
Psat0s4951g0200 Pisum sativum HOM05D002965 ORTHO05D010812 9.9e-23 112.1 92 64.1
Thhalv10022998m.g Eutrema salsugineum HOM05D002965 ORTHO05D011945 3.8e-22 110.2 152 49.3
Sopen05g009620 Solanum pennellii HOM05D008814 ORTHO05D010812 5.4e-21 106.3 82 64.6
AL5G20250 Arabidopsis lyrata HOM05D001987 ORTHO05D016577 9.3e-21 105.5 141 49.6
MELO3C027941.2 Cucumis melo HOM05D008814 ORTHO05D010812 2.7e-20 104.0 57 84.2
Peaxi162Scf01120g00002 Petunia axillaris HOM05D008814 ORTHO05D010812 2.7e-20 104.0 113 55.8
AT2G07629 Arabidopsis thaliana HOM05D019804 ORTHO05D016577 3.5e-20 103.6 133 48.9
BcaC02g09031 Brassica carinata HOM05D008814 ORTHO05D010812 1.3e-19 101.7 64 75.0
CARHR283030 Cardamine hirsuta HOM05D002965 ORTHO05D011945 2.3e-19 100.9 102 63.7
CAN.G85.24 Capsicum annuum HOM05D005210 ORTHO05D010286 3.9e-19 100.1 57 80.7
Nn2g10474 Nelumbo nucifera HOM05D008814 ORTHO05D010812 3.9e-19 100.1 86 58.1
CARHR283430 Cardamine hirsuta HOM05D000743 ORTHO05D016577 8.7e-19 99.0 227 35.2
AL3G44420 Arabidopsis lyrata HOM05D002965 ORTHO05D010536 1.1e-18 98.6 107 57.9
ATMG01200 Arabidopsis thaliana HOM05D000743 ORTHO05D016577 1.9e-18 97.8 221 34.4
Nn1g09507 Nelumbo nucifera HOM05D008814 ORTHO05D010812 3.3e-18 97.1 62 75.8
AT2G07698 Arabidopsis thaliana HOM05D000743 ORTHO05D000580 4.3e-18 96.7 187 38.0
Nn8g40503 Nelumbo nucifera HOM05D008814 ORTHO05D010812 5.6e-18 96.3 62 74.2
Lj2P1215T12 Lonicera japonica HOM05D008814 ORTHO05D010812 3.7e-17 93.6 59 74.6
C01p34830 Brassica napus HOM05D006320 ORTHO05D007069 4.8e-17 93.2 68 75.0
BolC1t03449H Brassica oleracea HOM05D010793 ORTHO05D011945 4.8e-17 93.2 68 75.0
COL.COLO4_04435 Corchorus olitorius HOM05D018954 ORTHO05D010812 2.4e-16 90.9 216 35.6
COL.COLO4_04461 Corchorus olitorius HOM05D018954 ORTHO05D010812 2.4e-16 90.9 216 35.6
COL.COLO4_04488 Corchorus olitorius HOM05D018954 ORTHO05D010812 2.4e-16 90.9 216 35.6
Solyc08g036535.1 Solanum lycopersicum HOM05D018954 ORTHO05D010812 1.2e-15 88.6 63 71.4
AL6G41420 Arabidopsis lyrata HOM05D008193 ORTHO05D010324 2.0e-15 87.8 92 48.9
AT2G07674 Arabidopsis thaliana HOM05D002965 ORTHO05D010536 2.0e-15 87.8 121 51.2
C01p34910 Brassica napus HOM05D006320 ORTHO05D007069 3.8e-14 83.6 68 70.6
MELO3C013036.2 Cucumis melo HOM05D008814 ORTHO05D010812 6.4e-14 82.8 53 71.7
ATR0987G010 Amborella trichopoda HOM05D008814 ORTHO05D010812 1.2e-12 78.6 53 77.4
Lsat_1_v5_gn_0_34981 Lactuca sativa HOM05D005210 ORTHO05D010286 7.9e-12 75.9 46 80.4
TPR.G32938 Trifolium pratense HOM05D000951 ORTHO05D003644 1.3e-11 75.1 104 43.3
Nitab4.5_0000478g0040 Nicotiana tabacum HOM05D008814 ORTHO05D010812 8.7e-11 72.4 38 89.5
Nn1g10191 Nelumbo nucifera HOM05D008814 ORTHO05D010812 1.1e-10 72.0 55 63.6
BcaB06g27867 Brassica carinata HOM05D010793 ORTHO05D011945 1.9e-10 71.2 235 32.8
CARHR283270 Cardamine hirsuta HOM05D002965 ORTHO05D011945 1.9e-10 71.2 75 62.7
ECA039G0011 Erigeron canadensis HOM05D005210 ORTHO05D010286 1.9e-10 71.2 44 79.5
Lsat_1_v5_gn_2_41741 Lactuca sativa HOM05D005210 ORTHO05D010286 1.9e-10 71.2 44 79.5
Lsat_1_v5_gn_5_16200 Lactuca sativa HOM05D005210 ORTHO05D010286 1.9e-10 71.2 44 79.5
Lsat_1_v5_gn_6_2961 Lactuca sativa HOM05D005210 ORTHO05D010286 1.9e-10 71.2 44 79.5
Thhalv10023031m.g Eutrema salsugineum HOM05D005210 ORTHO05D010286 2.1e-09 67.8 60 60.0
ATMG00040 Arabidopsis thaliana HOM05D010793 ORTHO05D011945 2.8e-09 67.4 189 36.5
CARHR282610 Cardamine hirsuta HOM05D010793 ORTHO05D011945 2.8e-09 67.4 189 36.5
BcaC08g43717 Brassica carinata HOM05D010793 ORTHO05D011945 3.7e-09 67.0 195 34.4
ATMG01020 Arabidopsis thaliana HOM05D002965 ORTHO05D011945 4.8e-09 66.6 90 48.9
Aa31csc1081G50 Aethionema arabicum HOM05D002965 ORTHO05D017245 8.2e-09 65.9 95 42.1
Nitab4.5_0000059g0490 Nicotiana tabacum HOM05D008814 ORTHO05D010812 1.1e-08 65.5 53 58.5
ATMG00660 Arabidopsis thaliana HOM05D005210 ORTHO05D010286 1.4e-08 65.1 56 62.5
Lsat_1_v5_gn_5_16401 Lactuca sativa HOM05D005210 ORTHO05D010286 1.8e-08 64.7 44 70.5
Aa31csc239G20 Aethionema arabicum HOM05D003467 ORTHO05D004220 3.1e-08 63.9 35 91.4
AL3G44370 Arabidopsis lyrata HOM05D003467 ORTHO05D004220 3.1e-08 63.9 35 91.4
AT2G07715 Arabidopsis thaliana HOM05D003467 ORTHO05D004220 3.1e-08 63.9 35 91.4
ATMG00560 Arabidopsis thaliana HOM05D003467 ORTHO05D004220 3.1e-08 63.9 35 91.4
BcaC05g26874 Brassica carinata HOM05D003467 ORTHO05D004220 3.1e-08 63.9 35 91.4
BNapus_Darmor_BZH_scaffold_234p00200 Brassica napus HOM05D003467 ORTHO05D004220 3.1e-08 63.9 35 91.4
BolSC28t60347H Brassica oleracea HOM05D003467 ORTHO05D004220 3.1e-08 63.9 35 91.4
BraSC48t46273Z Brassica rapa HOM05D003467 ORTHO05D004220 3.1e-08 63.9 35 91.4
Sp3g25530 Schrenkiella parvula HOM05D003467 ORTHO05D004220 3.1e-08 63.9 35 91.4
CARHR283020 Cardamine hirsuta HOM05D005210 ORTHO05D010286 5.3e-08 63.2 31 93.5
BcaC08g43711 Brassica carinata HOM05D003467 ORTHO05D004220 9.0e-08 62.4 35 88.6
BolC4t23495H Brassica oleracea HOM05D003467 ORTHO05D004220 1.2e-07 62.0 35 88.6
CARHR282930 Cardamine hirsuta HOM05D003467 ORTHO05D004220 1.2e-07 62.0 35 88.6
Sopen11g014320 Solanum pennellii HOM05D005210 ORTHO05D010286 2.6e-07 60.8 61 50.8
Thhalv10013769m.g Eutrema salsugineum HOM05D003467 ORTHO05D004220 2.2e-06 57.8 35 82.9
MBI16_g09480_MAGBIO Magnolia biondii HOM05D003467 ORTHO05D004220 3.8e-06 57.0 35 82.9


User provided reference genes

Program Settings