Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1868.2 942 100.0
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1835.1 947 98.6
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1811.2 943 97.0
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1798.5 958 96.1
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1729.1 950 92.6
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1486.1 950 79.3
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1483.8 949 78.7
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1481.8 948 78.6
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1478.0 949 78.4
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1474.1 950 78.1
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1469.1 950 78.1
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1461.8 946 78.2
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1457.6 948 78.3
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1426.4 927 77.6
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1416.4 949 76.4
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1298.9 953 69.9
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 0.0e+00 1280.4 919 71.6
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1232.2 964 64.9
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1229.9 896 68.4
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1203.7 885 67.8
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1198.3 892 66.9
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1191.0 786 76.6
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1186.0 892 66.7
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1185.2 876 68.0
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1184.1 893 66.5
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1183.7 892 66.1
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1182.9 885 66.8
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1182.2 967 63.9
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1182.2 876 68.0
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1180.2 887 67.1
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1178.7 892 66.9
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1177.2 956 63.0
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1176.8 873 67.9
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1176.0 892 66.0
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1176.0 894 65.9
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1176.0 882 66.4
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1172.9 885 66.3
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1169.8 955 63.0
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1169.8 899 65.7
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1169.5 881 67.2
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1169.5 884 65.5
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1169.1 896 66.2
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1166.0 888 65.8
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1166.0 885 66.0
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1165.2 885 65.9
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1164.4 899 65.1
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1162.9 945 63.2
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1160.6 889 65.4
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1160.6 881 65.7
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1160.2 887 65.3
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1159.8 885 65.8
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1159.4 894 65.0
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1157.9 922 64.2
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1157.9 882 66.3
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1157.1 889 65.6
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1156.7 966 62.2
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1156.4 960 61.8
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1152.5 887 65.3
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1152.5 965 61.9
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1152.5 889 65.0
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1151.7 890 65.5
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1149.0 958 61.6
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1146.7 887 65.1
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1146.3 957 61.7
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1143.3 886 65.0
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1143.3 916 63.8
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1134.0 908 63.9
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1133.2 993 60.2
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1132.1 892 64.2
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1129.4 876 65.1
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1127.9 909 63.4
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1122.8 878 64.5
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1119.4 884 64.4
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1118.6 882 63.9
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1118.2 871 64.8
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1109.7 895 63.7
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1098.6 891 62.7
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1086.6 908 62.2
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1085.5 808 67.5
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1082.8 923 61.5
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1079.7 885 61.8
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1078.5 896 62.1
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1078.5 914 60.8
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1077.8 933 61.6
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 6.4e-312 1074.7 811 67.0
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 1.8e-309 1065.8 913 59.8
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 1.3e-307 1059.7 880 60.1
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 3.9e-307 1058.1 822 64.4
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 1.5e-306 1056.2 878 61.6
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 3.1e-304 1048.5 894 61.5
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 1.3e-302 1043.1 906 58.2
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 3.1e-296 1021.9 881 60.8
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 9.9e-295 1016.9 524 97.3
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 1.7e-294 1016.1 890 59.0
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 2.0e-279 966.1 878 57.2
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 8.4e-270 934.1 863 58.4
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 3.1e-264 915.6 880 52.2
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 3.9e-259 898.7 552 81.2
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 9.3e-253 877.5 894 50.4
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 1.6e-244 850.1 793 56.9
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 7.2e-221 771.5 596 65.1
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 8.0e-220 768.1 678 60.0
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 6.8e-211 738.4 641 59.3
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 4.1e-208 729.2 585 63.2
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 5.2e-203 712.2 590 62.4
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 7.3e-197 691.8 909 44.0
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 6.0e-183 645.6 617 54.3
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 8.4e-177 625.2 723 46.5
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 5.4e-176 622.5 507 63.5
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 7.6e-170 602.1 903 41.5
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 8.4e-169 598.6 442 65.4
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 2.1e-164 583.9 406 69.2
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 7.9e-159 565.5 296 98.0
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 1.1e-149 535.0 393 67.2
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 4.1e-115 420.2 305 69.2
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.5e-101 375.2 265 70.2
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 1.9e-88 331.6 290 58.6
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 3.4e-77 294.3 337 50.1
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 6.4e-76 290.0 238 58.4
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 1.2e-71 275.8 216 65.7
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 3.1e-62 244.6 172 68.6
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 3.8e-60 237.7 253 49.8
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 6.2e-47 193.7 217 46.5
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 4.0e-38 164.5 199 50.3
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 8.7e-33 146.7 145 57.2
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 5.6e-32 144.1 95 73.7
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 6.7e-25 120.6 265 32.8
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 3.8e-20 104.8 401 23.9
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 6.1e-18 97.4 136 44.9
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 1.5e-16 92.8 82 53.7
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.5e-16 92.8 58 79.3
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 8.8e-09 67.0 112 40.2
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 2.6e-08 65.5 69 55.1
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 8.2e-07 60.5 37 78.4
TAR381G1729 Trochodendron aralioides HOM05D000406 ORTHO05D002714 9.1e-06 57.0 31 83.9


User provided reference genes

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