Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 2.0e-145 519.2 297 100.0
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 2.0e-145 519.2 297 100.0
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 2.0e-145 519.2 297 100.0
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 3.1e-138 495.4 297 94.3
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 5.4e-138 494.6 297 93.9
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 1.4e-130 469.9 298 91.3
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 2.4e-130 469.2 298 91.3
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 6.0e-129 464.5 298 90.6
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 3.0e-128 462.2 300 90.0
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 1.9e-127 459.5 298 88.9
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 8.3e-123 444.1 300 87.7
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 1.9e-122 443.0 297 84.8
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 7.0e-122 441.0 302 86.4
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 1.6e-121 439.9 304 87.5
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 1.7e-120 436.4 304 85.5
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 2.5e-119 432.6 298 88.3
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 9.5e-119 430.6 298 87.9
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 7.5e-116 421.0 298 84.2
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 2.7e-113 412.5 299 78.9
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 1.0e-112 410.6 298 76.5
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 9.5e-111 404.1 298 77.2
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 2.8e-110 402.5 297 74.4
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 5.4e-106 388.3 301 73.8
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 2.3e-104 382.9 299 77.9
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 2.1e-102 376.3 298 71.1
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 1.8e-80 303.5 298 61.7
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 1.5e-79 300.4 298 58.4
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 3.3e-79 299.3 291 60.5
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 7.4e-79 298.1 291 60.1
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 4.8e-78 295.4 299 57.5
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 1.1e-77 294.3 298 63.8
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 4.0e-77 292.4 299 58.5
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 9.0e-77 291.2 301 56.1
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 2.9e-75 286.2 301 61.1
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 2.9e-75 286.2 298 61.4
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 2.9e-75 286.2 292 58.2
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 6.5e-75 285.0 298 63.1
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 8.4e-75 284.6 281 61.6
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 1.1e-74 284.3 298 57.7
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 1.9e-74 283.5 296 56.4
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 3.2e-74 282.7 283 58.0
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 3.2e-74 282.7 299 57.5
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 3.2e-74 282.7 299 57.5
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 3.2e-74 282.7 295 56.9
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 5.5e-74 282.0 295 61.7
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 4.6e-73 278.9 264 59.5
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 4.6e-73 278.9 288 55.9
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 4.6e-73 278.9 298 57.0
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 6.0e-73 278.5 266 65.4
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 1.0e-72 277.7 298 56.7
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.3e-72 277.3 278 56.8
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 2.3e-72 276.6 297 57.6
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 2.5e-71 273.1 267 59.6
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 2.5e-71 273.1 300 56.7
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 7.4e-71 271.6 297 59.3
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 7.4e-71 271.6 298 59.4
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.3e-70 270.8 242 68.2
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.6e-70 270.4 241 67.6
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 2.2e-70 270.0 256 62.5
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 2.8e-70 269.6 256 66.0
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.8e-70 269.6 241 68.0
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.8e-70 269.6 241 68.0
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 2.8e-70 269.6 290 58.3
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 3.7e-70 269.2 300 59.3
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 4.8e-70 268.9 301 55.8
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.8e-70 268.9 241 68.0
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 6.3e-70 268.5 192 85.9
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 8.2e-70 268.1 292 61.0
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 8.2e-70 268.1 249 58.6
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.1e-69 267.7 256 64.8
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.1e-69 267.7 302 56.3
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.8e-69 266.9 263 59.3
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 1.8e-69 266.9 264 62.9
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 2.4e-69 266.5 300 58.7
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 6.9e-69 265.0 297 59.6
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.2e-68 264.2 303 58.4
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.2e-68 264.2 290 60.7
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 1.2e-68 264.2 305 54.4
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.5e-68 263.8 282 57.1
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.5e-68 263.8 275 58.9
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 1.5e-68 263.8 290 56.2
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 2.0e-68 263.5 293 56.7
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 2.6e-68 263.1 292 53.1
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 2.6e-68 263.1 290 57.2
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 2.6e-68 263.1 292 60.6
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 2.9e-67 259.6 300 57.3
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 2.9e-67 259.6 301 53.5
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 2.9e-67 259.6 292 60.3
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 6.5e-67 258.5 259 62.9
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 1.1e-66 257.7 264 60.6
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 1.1e-66 257.7 258 59.3
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 1.9e-66 256.9 259 62.9
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 3.2e-66 256.1 278 56.8
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 3.2e-66 256.1 264 60.6
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 5.5e-66 255.4 298 59.1
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 7.2e-66 255.0 292 56.5
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 1.2e-65 254.2 296 54.4
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.6e-65 253.8 300 52.7
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 2.7e-65 253.1 280 55.4
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 2.7e-65 253.1 285 54.0
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 1.4e-64 250.8 265 54.7
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 1.4e-64 250.8 276 58.3
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 3.0e-64 249.6 301 52.2
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 3.9e-64 249.2 295 56.9
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 3.9e-64 249.2 291 54.3
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 6.7e-64 248.4 292 53.8
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 6.7e-64 248.4 310 55.5
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 2.5e-63 246.5 284 58.5
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 4.3e-63 245.7 283 52.7
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 4.3e-63 245.7 283 52.7
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 3.7e-62 242.7 296 56.4
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 6.3e-62 241.9 284 53.5
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 2.4e-61 240.0 251 61.4
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 4.1e-61 239.2 251 57.4
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 5.3e-61 238.8 303 56.8
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.6e-60 236.5 299 56.9
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 5.0e-59 232.3 251 55.0
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 2.5e-58 229.9 241 59.8
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 5.5e-58 228.8 299 54.2
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 9.4e-58 228.0 275 49.8
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.4e-56 224.2 276 58.7
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 2.3e-56 223.4 291 55.3
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.0e-56 223.0 284 56.7
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.1e-55 221.1 278 50.7
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 2.6e-55 219.9 298 54.7
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 5.7e-55 218.8 296 49.7
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 1.8e-53 213.8 295 54.2
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 9.1e-53 211.5 280 50.4
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.5e-52 210.7 213 62.9
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 1.5e-52 210.7 295 53.6
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 3.5e-52 209.5 300 45.7
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.2e-50 203.0 295 52.9
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 7.2e-50 201.8 258 47.7
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 7.2e-50 201.8 211 60.7
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 1.2e-49 201.1 266 49.6
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 4.7e-49 199.1 269 44.2
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 3.8e-43 179.5 214 56.5
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.5e-42 176.8 192 63.0
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.4e-40 171.0 274 42.0
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 3.0e-40 169.9 249 47.0
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 2.6e-39 166.8 280 41.8
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 9.7e-39 164.9 153 55.6
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 2.8e-38 163.3 289 46.0
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 2.8e-38 163.3 141 60.3
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 3.8e-35 152.9 174 53.4
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 8.5e-35 151.8 183 62.3
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 1.4e-32 144.4 283 37.8
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 8.8e-32 141.7 251 38.2
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 2.0e-31 140.6 148 53.4
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.4e-31 139.4 142 50.0
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 4.4e-31 139.4 290 37.6
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 9.8e-31 138.3 260 40.8
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 3.7e-30 136.3 320 39.7
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 4.8e-30 136.0 160 55.0
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 4.8e-30 136.0 160 55.0
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 1.6e-28 131.0 138 53.6
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 4.5e-28 129.4 244 41.0
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 8.6e-27 125.2 190 56.3
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 2.3e-24 117.1 171 47.4
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 2.6e-23 113.6 291 33.3
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 6.3e-22 109.0 207 35.3
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.1e-21 106.3 146 45.9
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 3.5e-20 103.2 81 60.5
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 5.9e-20 102.4 292 31.8
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 2.5e-18 97.1 197 39.1
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.2e-17 94.7 70 67.1
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.2e-17 94.7 68 63.2
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 2.2e-14 84.0 74 56.8
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 6.4e-14 82.4 242 33.9
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.0e-11 75.1 83 60.2
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.1e-10 71.6 278 27.7
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.5e-10 71.2 161 35.4
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 4.3e-10 69.7 153 43.1
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 7.3e-10 68.9 48 68.8
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 6.2e-09 65.9 59 57.6
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 2.0e-07 60.8 58 62.1
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.6e-07 60.5 95 48.4
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 4.4e-07 59.7 272 27.9
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.3e-06 58.2 117 41.0


User provided reference genes

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