Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 4.7e-31 137.1 64 100.0
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 3.7e-12 74.3 39 84.6
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 3.7e-12 74.3 39 84.6
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 3.7e-12 74.3 39 84.6
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 3.7e-12 74.3 39 84.6
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 4.9e-12 73.9 38 86.8
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 6.4e-12 73.6 37 89.2
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 8.3e-12 73.2 39 82.1
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 8.3e-12 73.2 39 82.1
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 1.1e-11 72.8 39 82.1
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 1.4e-11 72.4 39 82.1
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 1.4e-11 72.4 39 82.1
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 5.4e-11 70.5 39 79.5
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 7.0e-11 70.1 41 75.6
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 9.2e-11 69.7 39 79.5
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 1.2e-10 69.3 39 84.6
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 1.6e-10 68.9 39 76.9
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.6e-10 68.9 39 76.9
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 2.7e-10 68.2 39 76.9
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 2.7e-10 68.2 39 76.9
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 2.7e-10 68.2 39 76.9
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.7e-10 68.2 56 57.1
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 2.7e-10 68.2 39 76.9
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 2.7e-10 68.2 39 76.9
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 2.7e-10 68.2 39 76.9
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 2.7e-10 68.2 39 76.9
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 2.7e-10 68.2 39 76.9
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 3.5e-10 67.8 39 76.9
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 4.6e-10 67.4 39 74.4
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 4.6e-10 67.4 40 72.5
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 4.6e-10 67.4 40 72.5
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 4.6e-10 67.4 39 74.4
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 6.0e-10 67.0 39 74.4
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 6.0e-10 67.0 39 74.4
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 6.0e-10 67.0 39 74.4
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 6.0e-10 67.0 39 74.4
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.0e-10 67.0 39 74.4
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.0e-10 67.0 39 74.4
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.0e-10 67.0 39 74.4
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 7.8e-10 66.6 39 74.4
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 7.8e-10 66.6 39 74.4
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 7.8e-10 66.6 38 78.9
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 7.8e-10 66.6 39 74.4
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 7.8e-10 66.6 39 74.4
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 1.0e-09 66.2 39 74.4
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.0e-09 66.2 38 78.9
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 1.3e-09 65.9 40 72.5
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.3e-09 65.9 39 74.4
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.3e-09 65.9 39 71.8
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 1.3e-09 65.9 42 66.7
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 1.3e-09 65.9 39 74.4
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 1.3e-09 65.9 39 74.4
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 1.3e-09 65.9 39 74.4
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 1.3e-09 65.9 39 74.4
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 1.3e-09 65.9 39 74.4
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 1.3e-09 65.9 39 74.4
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 1.7e-09 65.5 39 71.8
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 1.7e-09 65.5 39 71.8
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.7e-09 65.5 40 72.5
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 2.3e-09 65.1 39 71.8
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 2.3e-09 65.1 39 74.4
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 3.0e-09 64.7 40 70.0
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 3.0e-09 64.7 57 63.2
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 3.0e-09 64.7 39 71.8
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 3.0e-09 64.7 36 80.6
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 3.0e-09 64.7 39 71.8
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 3.0e-09 64.7 39 69.2
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 3.0e-09 64.7 39 74.4
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 3.9e-09 64.3 39 71.8
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 3.9e-09 64.3 39 71.8
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 3.9e-09 64.3 39 71.8
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 3.9e-09 64.3 39 71.8
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 3.9e-09 64.3 39 71.8
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 5.0e-09 63.9 39 71.8
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 5.0e-09 63.9 36 77.8
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 5.0e-09 63.9 39 74.4
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 5.0e-09 63.9 39 71.8
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 5.0e-09 63.9 39 71.8
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 5.0e-09 63.9 39 71.8
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 5.0e-09 63.9 42 66.7
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 6.6e-09 63.5 39 71.8
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 6.6e-09 63.5 39 71.8
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 6.6e-09 63.5 39 71.8
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 6.6e-09 63.5 39 71.8
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 6.6e-09 63.5 39 71.8
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 6.6e-09 63.5 39 69.2
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.6e-09 63.5 39 69.2
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.6e-09 63.5 39 69.2
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 6.6e-09 63.5 39 71.8
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 6.6e-09 63.5 39 69.2
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 6.6e-09 63.5 39 71.8
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 6.6e-09 63.5 39 69.2
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 8.6e-09 63.2 39 69.2
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 8.6e-09 63.2 39 69.2
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 8.6e-09 63.2 40 70.0
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 8.6e-09 63.2 40 70.0
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 8.6e-09 63.2 39 71.8
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 8.6e-09 63.2 39 69.2
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 8.6e-09 63.2 39 69.2
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 8.6e-09 63.2 36 77.8
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.1e-08 62.8 39 71.8
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 1.1e-08 62.8 39 69.2
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.5e-08 62.4 39 69.2
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.5e-08 62.4 39 69.2
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.5e-08 62.4 39 69.2
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 1.5e-08 62.4 39 69.2
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 1.5e-08 62.4 39 69.2
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 1.5e-08 62.4 39 66.7
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 1.5e-08 62.4 39 69.2
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 1.9e-08 62.0 39 69.2
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 1.9e-08 62.0 39 69.2
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 1.9e-08 62.0 39 69.2
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 2.5e-08 61.6 39 69.2
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 3.3e-08 61.2 39 66.7
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 3.3e-08 61.2 39 69.2
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 3.3e-08 61.2 39 69.2
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 3.3e-08 61.2 39 66.7
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 3.3e-08 61.2 36 75.0
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 3.3e-08 61.2 39 66.7
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 3.3e-08 61.2 39 69.2
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 4.3e-08 60.8 39 69.2
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 4.3e-08 60.8 36 72.2
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 4.3e-08 60.8 39 69.2
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 4.3e-08 60.8 39 64.1
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 4.3e-08 60.8 39 66.7
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 5.6e-08 60.5 34 79.4
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 5.6e-08 60.5 39 66.7
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 7.3e-08 60.1 39 66.7
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 7.3e-08 60.1 39 66.7
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 7.3e-08 60.1 39 66.7
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 7.3e-08 60.1 39 66.7
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 9.5e-08 59.7 39 64.1
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 9.5e-08 59.7 39 64.1
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 9.5e-08 59.7 39 66.7
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 9.5e-08 59.7 34 79.4
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 1.2e-07 59.3 38 68.4
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 1.2e-07 59.3 39 64.1
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 1.2e-07 59.3 39 66.7
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 1.2e-07 59.3 39 66.7
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 1.2e-07 59.3 39 66.7
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 2.8e-07 58.2 33 72.7
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 3.6e-07 57.8 39 64.1
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 6.2e-07 57.0 36 69.4
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 1.4e-06 55.8 39 61.5
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 5.2e-06 53.9 39 59.0
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 5.2e-06 53.9 30 80.0
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 6.8e-06 53.5 41 58.5


User provided reference genes

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