Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48673 Brassica carinata HOM05D006827 ORTHO05D008725 8.5e-147 523.9 306 100.0
C01p47070 Brassica napus HOM05D006827 ORTHO05D008725 8.5e-147 523.9 306 100.0
BolC1t04673H Brassica oleracea HOM05D006827 ORTHO05D008725 4.2e-146 521.5 306 99.7
BcaC09g48674 Brassica carinata HOM05D006827 ORTHO05D008725 1.9e-138 496.1 306 95.1
Thhalv10021204m.g Eutrema salsugineum HOM05D006827 ORTHO05D008725 1.8e-125 453.0 305 89.5
Sp3g15370 Schrenkiella parvula HOM05D006827 ORTHO05D008725 5.9e-124 448.0 305 83.0
BraA01t03774Z Brassica rapa HOM05D006827 ORTHO05D008725 6.8e-120 434.5 306 84.6
A01p37130 Brassica napus HOM05D006827 ORTHO05D008725 1.2e-119 433.7 309 87.4
AT3G17170 Arabidopsis thaliana HOM05D006827 ORTHO05D008725 1.4e-117 426.8 312 82.1
BcaB04g20857 Brassica carinata HOM05D006827 ORTHO05D008725 1.4e-117 426.8 306 83.7
AL3G30170 Arabidopsis lyrata HOM05D006827 ORTHO05D008725 2.3e-115 419.5 314 78.0
CARHR092440 Cardamine hirsuta HOM05D006827 ORTHO05D008725 1.1e-114 417.2 309 76.4
Carub.0003s1692 Capsella rubella HOM05D006827 ORTHO05D008725 2.3e-112 409.5 311 80.7
Aa31LG8G4170 Aethionema arabicum HOM05D006827 ORTHO05D008725 1.8e-104 383.3 313 73.2
THA.LOC104820318 Tarenaya hassleriana HOM05D006827 ORTHO05D008725 9.2e-93 344.4 303 66.0
Gohir.A10G174600 Gossypium hirsutum HOM05D006827 ORTHO05D008725 5.1e-75 285.4 241 63.5
Thecc.04G305900 Theobroma cacao HOM05D006827 ORTHO05D008725 8.7e-75 284.6 244 63.9
Cc03_g00540 Coffea canephora HOM05D006827 ORTHO05D008725 1.5e-74 283.9 273 56.8
Gorai.011G202600 Gossypium raimondii HOM05D006827 ORTHO05D008725 1.5e-74 283.9 241 63.1
DCAR_023373 Daucus carota HOM05D006827 ORTHO05D008725 3.3e-74 282.7 251 62.9
COL.COLO4_34569 Corchorus olitorius HOM05D001281 ORTHO05D001139 7.4e-74 281.6 236 65.3
TWI53G1816 Tripterygium wilfordii HOM05D006827 ORTHO05D008725 9.6e-74 281.2 266 56.8
Manes.03G207700 Manihot esculenta HOM05D006827 ORTHO05D008725 2.1e-73 280.0 219 70.8
Dinv15137 Davidia involucrata HOM05D006827 ORTHO05D008725 3.7e-73 279.3 214 65.4
Nitab4.5_0002421g0010 Nicotiana tabacum HOM05D006827 ORTHO05D008725 3.7e-73 279.3 216 67.6
GSVIVG01034952001 Vitis vinifera HOM05D006827 ORTHO05D008725 3.7e-73 279.3 178 75.8
Gohir.D10G181100 Gossypium hirsutum HOM05D006827 ORTHO05D008725 8.1e-73 278.1 241 61.8
Nitab4.5_0004047g0010 Nicotiana tabacum HOM05D006827 ORTHO05D008725 1.4e-72 277.3 219 68.0
Actinidia31567 Actinidia chinensis HOM05D006827 ORTHO05D008725 1.8e-72 276.9 253 58.9
Ah.13g071520 Amaranthus hybridus HOM05D006827 ORTHO05D008725 1.8e-72 276.9 279 56.3
Duzib212G0426 Durio zibethinus HOM05D006827 ORTHO05D008725 1.8e-72 276.9 236 65.3
Prupe.1G113000 Prunus persica HOM05D006827 ORTHO05D008725 1.8e-72 276.9 209 68.9
Potri.008G101900 Populus trichocarpa HOM05D006827 ORTHO05D008725 2.4e-72 276.6 286 58.0
TAR365G1248 Trochodendron aralioides HOM05D006827 ORTHO05D008725 3.1e-72 276.2 217 70.5
CANSAT78G0077 Cannabis sativa HOM05D006827 ORTHO05D008725 4.0e-72 275.8 177 75.1
MD13G1149000 Malus domestica HOM05D006827 ORTHO05D008725 4.0e-72 275.8 175 74.9
CiPaw.01G134600 Carya illinoinensis HOM05D006827 ORTHO05D008725 9.0e-72 274.6 214 66.8
Oeu014225.1 Olea europaea HOM05D006827 ORTHO05D008725 4.5e-71 272.3 204 72.1
EL10Ac3g05552 Beta vulgaris HOM05D006827 ORTHO05D008725 7.6e-71 271.6 257 58.0
MSTRG.3845 Avicennia marina HOM05D006827 ORTHO05D008725 1.3e-70 270.8 225 61.8
Sopen01g023660 Solanum pennellii HOM05D006827 ORTHO05D008725 1.3e-70 270.8 251 59.0
PSO210G0119 Papaver somniferum HOM05D006827 ORTHO05D008725 1.7e-70 270.4 178 72.5
Nn3g21791 Nelumbo nucifera HOM05D006827 ORTHO05D008725 2.9e-70 269.6 214 62.6
PSO761G0463 Papaver somniferum HOM05D006827 ORTHO05D008725 2.9e-70 269.6 178 72.5
Solyc01g058190.4 Solanum lycopersicum HOM05D006827 ORTHO05D008725 4.9e-70 268.9 217 64.1
PGSC0003DMG400015968 Solanum tuberosum HOM05D006827 ORTHO05D008725 8.4e-70 268.1 280 56.1
MBI18_g27379_MAGBIO Magnolia biondii HOM05D006827 ORTHO05D008725 1.4e-69 267.3 198 66.2
unitig_88.g27700 Utricularia gibba HOM05D006827 ORTHO05D008725 1.4e-69 267.3 208 64.9
Migut.N00027 Erythranthe guttata HOM05D006827 ORTHO05D008725 3.2e-69 266.2 201 64.7
arahy.Tifrunner.gnm1.ann1.W8AIPN Arachis hypogaea HOM05D006827 ORTHO05D008725 4.2e-69 265.8 217 62.2
Hma1.2p1_0516F.1_g170510 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 5.5e-69 265.4 199 69.3
arahy.Tifrunner.gnm1.ann1.7T6EZL Arachis hypogaea HOM05D006827 ORTHO05D008725 7.1e-69 265.0 217 62.2
ClCG06G004410 Citrullus lanatus HOM05D006827 ORTHO05D008725 7.1e-69 265.0 178 72.5
AUR62016245 Chenopodium quinoa HOM05D002153 ORTHO05D002137 9.3e-69 264.6 178 69.7
ECA246G4663 Erigeron canadensis HOM05D002153 ORTHO05D002137 9.3e-69 264.6 178 73.0
PGR031G1277 Punica granatum HOM05D006827 ORTHO05D008725 1.6e-68 263.8 178 70.8
RcHm_v2.0_Chr4g0426061 Rosa chinensis HOM05D006827 ORTHO05D008725 1.6e-68 263.8 178 70.8
Sed0009970 Sechium edule HOM05D006827 ORTHO05D008725 1.6e-68 263.8 178 71.3
HanXRQChr05g0148611 Helianthus annuus HOM05D006827 ORTHO05D008725 2.1e-68 263.5 176 74.4
TWI09G0591 Tripterygium wilfordii HOM05D006827 ORTHO05D008725 4.6e-68 262.3 197 66.0
Lsat_1_v5_gn_6_116121 Lactuca sativa HOM05D006827 ORTHO05D008725 6.0e-68 261.9 177 72.9
CAN.G281.10 Capsicum annuum HOM05D006827 ORTHO05D008725 7.9e-68 261.5 231 63.2
FvH4_4g20660 Fragaria vesca HOM05D006827 ORTHO05D008725 7.9e-68 261.5 200 64.0
FAN12G3056 Fragaria x ananassa HOM05D006827 ORTHO05D008725 7.9e-68 261.5 200 64.0
Lj6g0001147 Lotus japonicus HOM05D001281 ORTHO05D001139 7.9e-68 261.5 178 70.2
Cfa015277 Carpinus fangiana HOM05D006827 ORTHO05D008725 1.0e-67 261.2 204 66.2
QL06p013028 Quercus lobata HOM05D006827 ORTHO05D008725 1.3e-67 260.8 197 67.5
Ca_00959_v3 Cicer arietinum L. HOM05D006827 ORTHO05D008725 1.8e-67 260.4 178 69.7
TPR.G33906 Trifolium pratense HOM05D006827 ORTHO05D008725 3.0e-67 259.6 200 64.5
Sc25g0003190 Simmondsia chinensis HOM05D006827 ORTHO05D008725 6.7e-67 258.5 204 63.7
FAN07G0118 Fragaria x ananassa HOM05D006827 ORTHO05D008725 1.1e-66 257.7 206 62.6
MELO3C021255.2 Cucumis melo HOM05D006827 ORTHO05D008725 1.5e-66 257.3 232 60.8
Medtr2g033490 Medicago truncatula HOM05D006827 ORTHO05D008725 1.9e-66 256.9 178 69.7
Glyma.15G137900 Glycine max HOM05D006827 ORTHO05D008725 2.5e-66 256.5 217 59.4
SGA_v2.0_scaffold227G43227 Striga asiatica HOM05D006827 ORTHO05D008725 2.5e-66 256.5 177 71.2
Phvul.006G120200 Phaseolus vulgaris HOM05D006827 ORTHO05D008725 4.3e-66 255.8 207 61.8
Sabra08G0077100 Salix brachista HOM05D006827 ORTHO05D007631 2.8e-65 253.1 188 67.6
Aqoxy2G02656 Aquilegia oxysepala HOM05D006827 ORTHO05D008725 6.2e-65 251.9 163 74.2
Glyma.09G032900 Glycine max HOM05D001281 ORTHO05D008725 8.2e-65 251.5 178 66.3
Lj3A834T69 Lonicera japonica HOM05D006827 ORTHO05D008725 1.1e-64 251.1 171 69.6
VMungo0540G1290 Vigna mungo HOM05D006827 ORTHO05D008725 1.4e-64 250.8 178 65.7
arahy.Tifrunner.gnm1.ann1.GV6LK0 Arachis hypogaea HOM05D006827 ORTHO05D008725 4.0e-64 249.2 217 60.4
Ciclev10005460m.g Citrus clementina HOM05D006827 ORTHO05D008725 5.3e-64 248.8 242 59.9
ATR1120G107 Amborella trichopoda HOM05D006827 ORTHO05D008725 9.0e-64 248.1 234 56.0
Eucgr.B03980 Eucalyptus grandis HOM05D006827 ORTHO05D008725 2.0e-63 246.9 230 57.8
Hund11994 Selenicereus undatus HOM05D006827 ORTHO05D008725 2.6e-63 246.5 184 69.6
Os12g0563200 Oryza sativa ssp. japonica HOM05D006827 ORTHO05D008725 1.7e-62 243.8 247 54.7
HPP92_027958 Vanilla planifolia HOM05D006827 ORTHO05D008725 1.7e-62 243.8 233 55.8
Haze_01351 Corylus avellana HOM05D002153 ORTHO05D002137 6.5e-62 241.9 251 55.0
Zm00001eb136900 Zea mays HOM05D006827 ORTHO05D008725 6.5e-62 241.9 204 60.8
QL03p023650 Quercus lobata HOM05D006827 ORTHO05D008725 1.1e-61 241.1 240 55.0
Rhsim04G0242100 Rhododendron simsii HOM05D006827 ORTHO05D008725 1.1e-61 241.1 222 60.4
Psat1g161800 Pisum sativum HOM05D006827 ORTHO05D008725 4.6e-60 235.7 162 68.5
CAN.G582.1 Capsicum annuum HOM05D006827 ORTHO05D008725 1.3e-59 234.2 204 66.2
Lalb_Chr18g0058551 Lupinus albus HOM05D006827 ORTHO05D008725 3.9e-59 232.6 162 67.9
Peaxi162Scf00228g00735 Petunia axillaris HOM05D006827 ORTHO05D008725 1.8e-56 223.8 149 73.2
vmacro07963 Vaccinium macrocarpon HOM05D006827 ORTHO05D008725 1.9e-53 213.8 150 71.3
CsaV3_UNG230110 Cucumis sativus L. HOM05D006827 ORTHO05D008725 7.2e-53 211.8 166 66.3
CsaV3_6G028440 Cucumis sativus L. HOM05D006827 ORTHO05D008725 2.0e-47 193.7 253 48.2
Atru.chr4.3069 Acer truncatum HOM05D006827 ORTHO05D008725 1.9e-45 187.2 118 77.1
Hma1.2p1_0013F.1_g008250 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 7.9e-44 181.8 115 75.7
MD16G1149200 Malus domestica HOM05D006827 ORTHO05D008725 1.4e-43 181.0 119 73.1
BcaC05g28821 Brassica carinata HOM05D006827 ORTHO05D023991 2.0e-42 177.2 315 44.1
arahy.Tifrunner.gnm1.ann1.25F6GK Arachis hypogaea HOM05D006827 ORTHO05D008725 1.5e-37 161.0 157 57.3
SEGI_22692 Sequoiadendron giganteum HOM05D006827 ORTHO05D008725 5.7e-34 149.1 114 61.4
Cpa.g.sc9.7 Carica papaya HOM05D001281 ORTHO05D008725 1.1e-32 144.8 171 56.7
C05p49280 Brassica napus HOM05D006827 ORTHO05D008725 1.8e-32 144.1 145 63.4
Pp3c14_11410 Physcomitrium patens HOM05D006827 ORTHO05D008725 5.3e-32 142.5 160 45.6
Pp3c14_11414 Physcomitrium patens HOM05D006827 ORTHO05D008725 5.3e-32 142.5 160 45.6
Mapoly0005s0049 Marchantia polymorpha HOM05D006827 ORTHO05D008725 7.7e-31 138.7 162 46.9
CBR_g38487 Chara braunii HOM05D006827 ORTHO05D008725 2.8e-25 120.2 147 42.9
AUR62032776 Chenopodium quinoa HOM05D006827 ORTHO05D008725 6.3e-25 119.0 87 64.4
SMO351G0308 Selaginella moellendorffii HOM05D006827 ORTHO05D008725 7.0e-24 115.5 98 50.0
A05p32600 Brassica napus HOM05D006827 ORTHO05D008725 9.4e-21 105.1 80 71.2
BraA05t22084Z Brassica rapa HOM05D006827 ORTHO05D008725 9.4e-21 105.1 80 71.2
Psat7g189800 Pisum sativum HOM05D006827 ORTHO05D008725 7.5e-18 95.5 73 60.3
BcaB06g25810 Brassica carinata HOM05D006827 ORTHO05D023991 4.9e-17 92.8 67 82.1
PRCOL_00004690 Prasinoderma coloniale HOM05D006827 ORTHO05D008725 2.5e-13 80.5 101 42.6
Hma1.2p1_0013F.1_g008240 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 2.1e-12 77.4 59 62.7
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 1.2e-10 71.6 123 36.6
C05p49290 Brassica napus HOM05D064981 ORTHO05D023991 2.0e-10 70.9 98 48.0
BolC5t33670H Brassica oleracea HOM05D064981 ORTHO05D023991 2.0e-10 70.9 99 49.5
Psat4g040600 Pisum sativum HOM05D006827 ORTHO05D008725 1.4e-08 64.7 166 28.9
TAR633G1668 Trochodendron aralioides HOM05D006827 ORTHO05D023991 4.6e-07 59.7 35 74.3
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 7.8e-07 58.9 88 35.2


User provided reference genes

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