Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 1.8e-56 222.2 103 100.0
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 2.4e-45 185.3 85 100.0
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 2.0e-44 182.2 85 98.8
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 2.0e-44 182.2 85 98.8
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 3.5e-36 154.8 88 80.7
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 3.0e-35 151.8 68 100.0
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.2e-33 146.4 88 76.1
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 2.0e-31 139.0 89 74.2
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 4.4e-31 137.9 88 70.5
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 8.3e-30 133.7 89 70.8
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.1e-29 133.3 89 70.8
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 2.9e-22 108.6 89 57.3
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 2.9e-22 108.6 88 58.0
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 8.4e-22 107.1 96 52.1
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.1e-21 106.7 88 58.0
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 1.1e-21 106.7 91 56.0
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 1.4e-21 106.3 91 53.8
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 2.4e-21 105.5 85 56.5
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 4.2e-21 104.8 87 56.3
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 7.1e-21 104.0 88 58.0
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 7.1e-21 104.0 88 56.8
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 9.2e-21 103.6 95 51.6
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 1.2e-20 103.2 88 56.8
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 1.2e-20 103.2 88 55.7
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 2.7e-20 102.1 87 52.9
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 2.7e-20 102.1 87 54.0
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 3.5e-20 101.7 87 55.2
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 3.5e-20 101.7 88 53.4
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 4.6e-20 101.3 90 52.2
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 4.6e-20 101.3 87 55.2
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 6.0e-20 100.9 103 48.5
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 6.0e-20 100.9 94 53.2
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 6.0e-20 100.9 90 52.2
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 6.0e-20 100.9 88 54.5
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.3e-19 99.8 88 53.4
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 1.3e-19 99.8 88 53.4
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 1.3e-19 99.8 88 53.4
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 1.3e-19 99.8 88 52.3
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 1.7e-19 99.4 90 52.2
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.7e-19 99.4 87 52.9
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.7e-19 99.4 87 52.9
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 2.3e-19 99.0 88 54.5
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 2.3e-19 99.0 88 53.4
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 3.0e-19 98.6 88 54.5
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 3.0e-19 98.6 93 50.5
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 3.9e-19 98.2 86 54.7
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 3.9e-19 98.2 88 52.3
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 3.9e-19 98.2 89 51.7
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 5.1e-19 97.8 94 52.1
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 5.1e-19 97.8 88 51.1
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 6.6e-19 97.4 90 51.1
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 8.7e-19 97.1 86 55.8
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 8.7e-19 97.1 88 50.0
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 8.7e-19 97.1 88 51.1
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 8.7e-19 97.1 88 50.0
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.1e-18 96.7 87 51.7
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 1.1e-18 96.7 88 50.0
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 1.5e-18 96.3 88 51.1
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.5e-18 96.3 90 48.9
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 1.5e-18 96.3 88 52.3
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 1.5e-18 96.3 90 48.9
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 1.9e-18 95.9 88 50.0
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 1.9e-18 95.9 88 51.1
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 2.5e-18 95.5 88 52.3
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.5e-18 95.5 89 51.7
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.5e-18 95.5 89 52.8
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 2.5e-18 95.5 89 55.1
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 2.5e-18 95.5 88 50.0
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 2.5e-18 95.5 88 51.1
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 2.5e-18 95.5 87 50.6
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 2.5e-18 95.5 86 51.2
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 4.3e-18 94.7 90 51.1
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 4.3e-18 94.7 88 52.3
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 4.3e-18 94.7 75 54.7
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 4.3e-18 94.7 88 52.3
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 5.6e-18 94.4 88 52.3
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 5.6e-18 94.4 87 52.9
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 7.3e-18 94.0 88 51.1
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 9.6e-18 93.6 88 51.1
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.3e-17 93.2 88 50.0
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 1.6e-17 92.8 90 50.0
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.6e-17 92.8 93 48.4
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 2.8e-17 92.0 88 50.0
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 3.6e-17 91.7 85 49.4
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 4.8e-17 91.3 88 47.7
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 4.8e-17 91.3 87 48.3
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 4.8e-17 91.3 87 48.3
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 4.8e-17 91.3 88 48.9
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 6.2e-17 90.9 90 51.1
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 6.2e-17 90.9 107 43.9
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 8.1e-17 90.5 88 48.9
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 8.1e-17 90.5 90 46.7
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.1e-16 90.1 88 50.0
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 1.1e-16 90.1 88 50.0
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 1.1e-16 90.1 88 48.9
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.4e-16 89.7 88 47.7
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 1.4e-16 89.7 89 46.1
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 1.8e-16 89.4 87 47.1
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 1.8e-16 89.4 91 47.3
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 1.8e-16 89.4 90 47.8
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 1.8e-16 89.4 98 43.9
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 3.1e-16 88.6 90 47.8
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 3.1e-16 88.6 87 50.6
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 3.1e-16 88.6 87 50.6
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 5.3e-16 87.8 86 46.5
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 6.9e-16 87.4 88 47.7
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 9.0e-16 87.0 99 43.4
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.2e-15 86.7 88 47.7
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 5.8e-15 84.3 91 45.1
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 5.8e-15 84.3 67 53.7
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 1.3e-14 83.2 89 47.2
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 7.1e-13 77.4 88 45.5
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 1.2e-12 76.6 96 40.6
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 1.1e-10 70.1 43 62.8
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 1.5e-10 69.7 84 45.2
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 1.5e-10 69.7 73 46.6
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 1.9e-10 69.3 94 38.3
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 3.3e-10 68.6 62 46.8
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 3.3e-10 68.6 64 43.8
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 5.6e-10 67.8 70 48.6
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 5.6e-10 67.8 71 50.7
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 5.6e-10 67.8 86 41.9
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 9.6e-10 67.0 77 42.9
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.8e-09 65.5 72 45.8
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 7.6e-07 57.4 34 67.6
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 1.7e-06 56.2 58 51.7


User provided reference genes

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