Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48586 Brassica carinata HOM05D002997 ORTHO05D003021 2.5e-56 221.9 111 100.0
BraA05t22166Z Brassica rapa HOM05D002997 ORTHO05D003021 1.6e-39 166.0 153 62.7
C05p50410 Brassica napus HOM05D002997 ORTHO05D003021 1.1e-38 163.3 153 62.1
Sp3g14420 Schrenkiella parvula HOM05D002997 ORTHO05D003021 1.4e-38 162.9 151 62.9
Carub.0003s1580 Capsella rubella HOM05D002997 ORTHO05D003021 1.8e-38 162.5 151 61.6
BcaC05g28914 Brassica carinata HOM05D002997 ORTHO05D003021 4.0e-38 161.4 153 61.4
BolC5t33788H Brassica oleracea HOM05D002997 ORTHO05D003021 4.0e-38 161.4 153 61.4
BcaB06g25701 Brassica carinata HOM05D002997 ORTHO05D003021 6.9e-38 160.6 153 60.1
A05p33410 Brassica napus HOM05D002997 ORTHO05D003021 1.2e-37 159.8 153 60.8
C01p48230 Brassica napus HOM05D002997 ORTHO05D003021 4.5e-37 157.9 111 76.6
AT3G16070 Arabidopsis thaliana HOM05D002997 ORTHO05D003021 4.9e-36 154.5 151 59.6
AL3G28720 Arabidopsis lyrata HOM05D002997 ORTHO05D003021 8.4e-36 153.7 151 58.9
Thhalv10022394m.g Eutrema salsugineum HOM05D002997 ORTHO05D003021 1.4e-35 152.9 150 58.0
CARHR091230 Cardamine hirsuta HOM05D002997 ORTHO05D003021 1.2e-34 149.8 150 58.0
Aa31LG8G3220 Aethionema arabicum HOM05D002997 ORTHO05D003021 7.6e-29 130.6 149 54.4
BraA01t03861Z Brassica rapa HOM05D002997 ORTHO05D003021 1.2e-18 96.7 51 92.2
THA.LOC104810523 Tarenaya hassleriana HOM05D002997 ORTHO05D003021 1.6e-18 96.3 133 46.6
A01p38040 Brassica napus HOM05D002997 ORTHO05D003021 1.6e-15 86.3 44 93.2
BolC1t04787H Brassica oleracea HOM05D002997 ORTHO05D003021 2.2e-15 85.9 76 63.2
Medtr2g101980 Medicago truncatula HOM05D002997 ORTHO05D003021 3.6e-10 68.6 72 43.1
QL05p022592 Quercus lobata HOM05D002997 ORTHO05D003021 6.1e-10 67.8 75 45.3
Ciclev10026471m.g Citrus clementina HOM05D002997 ORTHO05D003021 1.0e-09 67.0 67 47.8
FAN02G2191 Fragaria x ananassa HOM05D002997 ORTHO05D003021 1.0e-09 67.0 68 47.1
FAN05G3934 Fragaria x ananassa HOM05D002997 ORTHO05D003021 1.4e-09 66.6 106 38.7
CiPaw.01G237700 Carya illinoinensis HOM05D002997 ORTHO05D003021 1.8e-09 66.2 65 50.8
RcHm_v2.0_Chr2g0138311 Rosa chinensis HOM05D002997 ORTHO05D003021 2.3e-09 65.9 55 54.5
Prupe.3G069200 Prunus persica HOM05D002997 ORTHO05D003021 3.9e-09 65.1 65 49.2
VMungo1080G1010 Vigna mungo HOM05D002997 ORTHO05D003021 3.9e-09 65.1 67 47.8
Haze_16397 Corylus avellana HOM05D002997 ORTHO05D003021 5.1e-09 64.7 75 46.7
FAN09G1570 Fragaria x ananassa HOM05D002997 ORTHO05D003021 5.1e-09 64.7 68 47.1
Lalb_Chr14g0373331 Lupinus albus HOM05D002997 ORTHO05D003021 5.1e-09 64.7 66 48.5
Cfa002082 Carpinus fangiana HOM05D002997 ORTHO05D003021 6.7e-09 64.3 77 44.2
Medtr0147s0050 Medicago truncatula HOM05D002997 ORTHO05D003021 6.7e-09 64.3 64 48.4
Phvul.005G168000 Phaseolus vulgaris HOM05D002997 ORTHO05D003021 6.7e-09 64.3 51 54.9
Lj3g0027232 Lotus japonicus HOM05D002997 ORTHO05D003021 8.8e-09 63.9 92 41.3
Manes.04G125100 Manihot esculenta HOM05D002997 ORTHO05D003021 8.8e-09 63.9 49 61.2
CiPaw.02G150100 Carya illinoinensis HOM05D002997 ORTHO05D003021 1.5e-08 63.2 68 47.1
Gohir.A05G131000 Gossypium hirsutum HOM05D002997 ORTHO05D003021 1.5e-08 63.2 50 56.0
Gohir.D05G130300 Gossypium hirsutum HOM05D002997 ORTHO05D003021 1.5e-08 63.2 50 56.0
Gorai.009G134100 Gossypium raimondii HOM05D002997 ORTHO05D003021 1.5e-08 63.2 50 56.0
MD09G1210900 Malus domestica HOM05D002997 ORTHO05D003021 1.5e-08 63.2 125 32.8
MD17G1193700 Malus domestica HOM05D002997 ORTHO05D003021 1.5e-08 63.2 62 46.8
Thecc.06G090500 Theobroma cacao HOM05D002997 ORTHO05D003021 1.5e-08 63.2 50 56.0
CANSAT25G2877 Cannabis sativa HOM05D002997 ORTHO05D003021 2.5e-08 62.4 66 45.5
Glyma.15G015400 Glycine max HOM05D002997 ORTHO05D003021 2.5e-08 62.4 78 39.7
Lalb_Chr24g0395881 Lupinus albus HOM05D002997 ORTHO05D003021 2.5e-08 62.4 48 58.3
TWI12G0343 Tripterygium wilfordii HOM05D002997 ORTHO05D003021 2.5e-08 62.4 76 38.2
COL.COLO4_30400 Corchorus olitorius HOM05D001537 ORTHO05D008612 3.3e-08 62.0 112 33.9
FvH4_6g31461 Fragaria vesca HOM05D002997 ORTHO05D003021 3.3e-08 62.0 106 36.8
FAN14G5360 Fragaria x ananassa HOM05D002997 ORTHO05D003021 3.3e-08 62.0 106 36.8
Glyma.07G005100 Glycine max HOM05D002997 ORTHO05D003021 3.3e-08 62.0 48 58.3
Glyma.13G358000 Glycine max HOM05D002997 ORTHO05D003021 3.3e-08 62.0 78 39.7
ClCG09G002040 Citrullus lanatus HOM05D001537 ORTHO05D008612 4.3e-08 61.6 76 44.7
Lj3g0023992 Lotus japonicus HOM05D002997 ORTHO05D003021 4.3e-08 61.6 72 40.3
Manes.11G044600 Manihot esculenta HOM05D002997 ORTHO05D003021 5.7e-08 61.2 49 57.1
Cpa.g.sc98.24 Carica papaya HOM05D002997 ORTHO05D003021 7.4e-08 60.8 70 44.3
Ca_01122_v3 Cicer arietinum L. HOM05D002997 ORTHO05D003021 7.4e-08 60.8 47 53.2
Ca_20381_v3 Cicer arietinum L. HOM05D002997 ORTHO05D003021 7.4e-08 60.8 70 41.4
Sed0011193 Sechium edule HOM05D002997 ORTHO05D003021 7.4e-08 60.8 50 54.0
Gorai.011G075100 Gossypium raimondii HOM05D002997 ORTHO05D003021 9.7e-08 60.5 50 52.0
Rhsim12G0199200 Rhododendron simsii HOM05D002997 ORTHO05D003021 1.3e-07 60.1 72 41.7
Glyma.08G205600 Glycine max HOM05D002997 ORTHO05D003021 1.7e-07 59.7 70 42.9
Gohir.A10G080600 Gossypium hirsutum HOM05D002997 ORTHO05D003021 1.7e-07 59.7 50 52.0
PGR102G2036 Punica granatum HOM05D002997 ORTHO05D003021 1.7e-07 59.7 50 56.0
TPR.G17668 Trifolium pratense HOM05D002997 ORTHO05D003021 1.7e-07 59.7 48 52.1
CsaV3_7G033290 Cucumis sativus L. HOM05D002997 ORTHO05D003021 2.2e-07 59.3 52 50.0
Duzib160G0665 Durio zibethinus HOM05D002997 ORTHO05D003021 2.2e-07 59.3 114 36.0
Manes.11G044900 Manihot esculenta HOM05D002997 ORTHO05D003021 2.2e-07 59.3 74 41.9
Potri.001G182500 Populus trichocarpa HOM05D002997 ORTHO05D003021 2.2e-07 59.3 75 42.7
Prupe.7G231300 Prunus persica HOM05D002997 ORTHO05D003021 2.2e-07 59.3 73 42.5
TPR.G37204 Trifolium pratense HOM05D002997 ORTHO05D003021 2.2e-07 59.3 79 38.0
Medtr0147s0020 Medicago truncatula HOM05D002997 ORTHO05D003021 2.8e-07 58.9 48 52.1
Psat7g250680 Pisum sativum HOM05D002997 ORTHO05D003021 2.8e-07 58.9 64 42.2
MELO3C024242.2 Cucumis melo HOM05D002997 ORTHO05D003021 3.7e-07 58.5 76 43.4
Gohir.D10G070750 Gossypium hirsutum HOM05D002997 ORTHO05D003021 3.7e-07 58.5 96 37.5
Sabra01G0145100 Salix brachista HOM05D002997 ORTHO05D003021 3.7e-07 58.5 75 42.7
Atru.chr1.3308 Acer truncatum HOM05D002997 ORTHO05D003021 4.8e-07 58.2 50 50.0
arahy.Tifrunner.gnm1.ann1.170V9L Arachis hypogaea HOM05D002997 ORTHO05D003021 4.8e-07 58.2 50 48.0
arahy.Tifrunner.gnm1.ann1.RP73U6 Arachis hypogaea HOM05D002997 ORTHO05D003021 4.8e-07 58.2 50 48.0
Eucgr.J02977 Eucalyptus grandis HOM05D002997 ORTHO05D003021 4.8e-07 58.2 85 36.5
Glyma.05G231000 Glycine max HOM05D002997 ORTHO05D003021 6.3e-07 57.8 49 51.0
TAR624G0694 Trochodendron aralioides HOM05D002997 ORTHO05D003021 6.3e-07 57.8 67 40.3
Nn8g39177 Nelumbo nucifera HOM05D002997 ORTHO05D003021 8.2e-07 57.4 76 36.8
Rhsim01G0094800 Rhododendron simsii HOM05D002997 ORTHO05D003021 1.1e-06 57.0 66 42.4
Sabra03G0029800 Salix brachista HOM05D002997 ORTHO05D003021 1.1e-06 57.0 66 43.9
Potri.003G053600 Populus trichocarpa HOM05D002997 ORTHO05D003021 1.4e-06 56.6 66 43.9
CSS0030169 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 1.8e-06 56.2 70 41.4
CSS0015499 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 2.4e-06 55.8 158 30.4
Potri.018G080001 Populus trichocarpa HOM05D002997 ORTHO05D003021 2.4e-06 55.8 75 41.3
VMungo0331G0516 Vigna mungo HOM05D002997 ORTHO05D003021 2.4e-06 55.8 69 40.6
Eucgr.F03026 Eucalyptus grandis HOM05D002997 ORTHO05D003021 3.1e-06 55.5 50 48.0
Phvul.010G149600 Phaseolus vulgaris HOM05D002997 ORTHO05D003021 3.1e-06 55.5 69 40.6
Psat5g298440 Pisum sativum HOM05D002997 ORTHO05D003021 3.1e-06 55.5 70 40.0
VMungo0251G2794 Vigna mungo HOM05D002997 ORTHO05D003021 3.1e-06 55.5 50 46.0
Ca_17338_v3 Cicer arietinum L. HOM05D002997 ORTHO05D003021 4.1e-06 55.1 79 40.5
Migut.I00887 Erythranthe guttata HOM05D002997 ORTHO05D003021 4.1e-06 55.1 99 35.4
CSS0016234 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 5.3e-06 54.7 158 29.7
CSS0043954 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 5.3e-06 54.7 73 41.1
Cc06_g09680 Coffea canephora HOM05D002997 ORTHO05D003021 5.3e-06 54.7 50 46.0
Lsat_1_v5_gn_4_102060 Lactuca sativa HOM05D002997 ORTHO05D003021 5.3e-06 54.7 73 37.0
EL10Ac9g22016 Beta vulgaris HOM05D001537 ORTHO05D008612 6.9e-06 54.3 50 48.0
Lalb_Chr22g0352801 Lupinus albus HOM05D002997 ORTHO05D003021 6.9e-06 54.3 94 30.9
Phvul.002G313100 Phaseolus vulgaris HOM05D002997 ORTHO05D003021 6.9e-06 54.3 49 49.0
Sabra18G0067900 Salix brachista HOM05D002997 ORTHO05D003021 6.9e-06 54.3 48 47.9
Lalb_Chr25g0279881 Lupinus albus HOM05D002997 ORTHO05D003021 9.1e-06 53.9 66 39.4


User provided reference genes

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