Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48525 Brassica carinata HOM05D010856 ORTHO05D013526 2.1e-48 195.3 94 100.0
C01p48820 Brassica napus HOM05D010856 ORTHO05D013526 3.0e-42 174.9 89 92.1
BolC1t04837H Brassica oleracea HOM05D010856 ORTHO05D013526 3.0e-42 174.9 89 92.1
BcaC09g48615 Brassica carinata HOM05D010856 ORTHO05D013526 7.3e-41 170.2 85 94.1
BolC1t04746H Brassica oleracea HOM05D010856 ORTHO05D013526 7.3e-41 170.2 85 94.1
C01p47740 Brassica napus HOM05D010856 ORTHO05D013526 2.7e-35 151.8 85 83.5
C01p47770 Brassica napus HOM05D010856 ORTHO05D013526 2.7e-35 151.8 85 83.5
A01p37720 Brassica napus HOM05D010856 ORTHO05D013526 1.3e-34 149.4 85 82.4
C01p47780 Brassica napus HOM05D010856 ORTHO05D013526 2.3e-34 148.7 85 82.4
BraA01t03832Z Brassica rapa HOM05D010856 ORTHO05D013526 1.1e-33 146.4 88 77.3
BcaB04g20915 Brassica carinata HOM05D010856 ORTHO05D013526 3.3e-33 144.8 82 81.7
C01p47730 Brassica napus HOM05D010856 ORTHO05D013526 1.7e-29 132.5 82 79.3
A01p38490 Brassica napus HOM05D010856 ORTHO05D013526 5.5e-20 100.9 60 85.0
THA.LOC104817996 Tarenaya hassleriana HOM05D006749 ORTHO05D008352 3.0e-10 68.6 71 47.9
AUR62016443 Chenopodium quinoa HOM05D006749 ORTHO05D008352 6.7e-10 67.4 49 59.2
EL10Ac9g21998 Beta vulgaris HOM05D006749 ORTHO05D008352 1.1e-09 66.6 49 55.1
ATR0315G083 Amborella trichopoda HOM05D006749 ORTHO05D008352 4.3e-09 64.7 64 46.9
Thhalv10020273m.g Eutrema salsugineum HOM05D006749 ORTHO05D008352 4.3e-09 64.7 52 59.6
BcaC01g03842 Brassica carinata HOM05D006749 ORTHO05D008352 5.7e-09 64.3 71 47.9
C03p48040 Brassica napus HOM05D006749 ORTHO05D008352 5.7e-09 64.3 71 47.9
BolC3t17083H Brassica oleracea HOM05D006749 ORTHO05D008352 5.7e-09 64.3 71 47.9
Ah.01g005340 Amaranthus hybridus HOM05D006749 ORTHO05D008352 7.4e-09 63.9 49 53.1
AL3G28660 Arabidopsis lyrata HOM05D006749 ORTHO05D008352 7.4e-09 63.9 52 59.6
Aa31LG8G3180 Aethionema arabicum HOM05D006749 ORTHO05D008352 9.7e-09 63.5 52 55.8
A03p39640 Brassica napus HOM05D006749 ORTHO05D008352 1.3e-08 63.2 52 59.6
BraA03t13111Z Brassica rapa HOM05D006749 ORTHO05D008352 1.3e-08 63.2 52 59.6
Carub.0003s1574 Capsella rubella HOM05D006749 ORTHO05D008352 1.3e-08 63.2 52 57.7
FAN05G1436 Fragaria x ananassa HOM05D006749 ORTHO05D008352 1.3e-08 63.2 49 55.1
FAN09G1040 Fragaria x ananassa HOM05D006749 ORTHO05D008352 1.3e-08 63.2 49 55.1
Ciclev10023415m.g Citrus clementina HOM05D006749 ORTHO05D008352 1.7e-08 62.8 49 59.2
AT3G16010 Arabidopsis thaliana HOM05D006749 ORTHO05D008352 2.2e-08 62.4 52 57.7
FAN02G2386 Fragaria x ananassa HOM05D006749 ORTHO05D008352 2.2e-08 62.4 49 53.1
MSTRG.11079 Avicennia marina HOM05D006749 ORTHO05D008352 2.8e-08 62.0 49 55.1
CARHR091140 Cardamine hirsuta HOM05D006749 ORTHO05D008352 2.8e-08 62.0 52 57.7
Haze_16431 Corylus avellana HOM05D006749 ORTHO05D008352 2.8e-08 62.0 49 55.1
MD17G1195500 Malus domestica HOM05D006749 ORTHO05D008352 2.8e-08 62.0 49 55.1
unitig_27.g25088 Utricularia gibba HOM05D006749 ORTHO05D008352 2.8e-08 62.0 49 55.1
BcaB04g18873 Brassica carinata HOM05D006749 ORTHO05D008352 3.7e-08 61.6 52 55.8
Cfa002064 Carpinus fangiana HOM05D006749 ORTHO05D008352 3.7e-08 61.6 49 53.1
COL.COLO4_30370 Corchorus olitorius HOM05D000062 ORTHO05D001642 3.7e-08 61.6 49 57.1
CsaV3_3G025150 Cucumis sativus L. HOM05D006749 ORTHO05D008352 3.7e-08 61.6 49 57.1
QL05p024247 Quercus lobata HOM05D006749 ORTHO05D008352 3.7e-08 61.6 49 55.1
Sp3g14360 Schrenkiella parvula HOM05D006749 ORTHO05D008352 3.7e-08 61.6 52 55.8
Cc04_g03450 Coffea canephora HOM05D006749 ORTHO05D008352 4.8e-08 61.2 52 50.0
Cpa.g.sc68.20 Carica papaya HOM05D006749 ORTHO05D008352 6.3e-08 60.8 49 53.1
FvH4_6g31160 Fragaria vesca HOM05D006749 ORTHO05D008352 6.3e-08 60.8 49 53.1
FAN14G3575 Fragaria x ananassa HOM05D006749 ORTHO05D008352 6.3e-08 60.8 49 53.1
GSVIVG01017111001 Vitis vinifera HOM05D006749 ORTHO05D008352 6.3e-08 60.8 49 55.1
HanXRQChr09g0275241 Helianthus annuus HOM05D006749 ORTHO05D008352 8.2e-08 60.5 49 51.0
Manes.04G123300 Manihot esculenta HOM05D006749 ORTHO05D008352 8.2e-08 60.5 52 53.8
RcHm_v2.0_Chr2g0137841 Rosa chinensis HOM05D006749 ORTHO05D008352 8.2e-08 60.5 49 53.1
DCAR_026313 Daucus carota HOM05D006749 ORTHO05D008352 1.1e-07 60.1 71 45.1
MBI04_g22013_MAGBIO Magnolia biondii HOM05D006749 ORTHO05D008352 1.1e-07 60.1 49 53.1
Oeu025379.3 Olea europaea HOM05D006749 ORTHO05D008352 1.1e-07 60.1 49 49.0
SGA_v2.0_scaffold5G02592 Striga asiatica HOM05D006749 ORTHO05D008352 1.1e-07 60.1 47 55.3
PSO675G3775 Papaver somniferum HOM05D006749 ORTHO05D008352 1.4e-07 59.7 71 42.3
SalBow2G3072 Salvia bowleyana HOM05D006749 ORTHO05D008352 1.8e-07 59.3 52 51.9
Migut.I00863 Erythranthe guttata HOM05D006749 ORTHO05D008352 2.4e-07 58.9 52 51.9
Sc10g0007430 Simmondsia chinensis HOM05D006749 ORTHO05D008352 2.4e-07 58.9 49 51.0
MELO3C012957.2 Cucumis melo HOM05D006749 ORTHO05D008352 3.1e-07 58.5 49 53.1
TWI75G1451 Tripterygium wilfordii HOM05D006749 ORTHO05D008352 3.1e-07 58.5 49 55.1
CSS0018907 Camellia sinensis var. sinensis HOM05D006749 ORTHO05D008352 4.1e-07 58.2 49 49.0
Duzib235G0398 Durio zibethinus HOM05D006749 ORTHO05D008352 4.1e-07 58.2 49 53.1
PSO229G0046 Papaver somniferum HOM05D006749 ORTHO05D008352 4.1e-07 58.2 71 40.8
Thecc.06G087000 Theobroma cacao HOM05D006749 ORTHO05D008352 4.1e-07 58.2 49 53.1
CANSAT54G2088 Cannabis sativa HOM05D006749 ORTHO05D008352 5.3e-07 57.8 52 50.0
CARHR158320 Cardamine hirsuta HOM05D006749 ORTHO05D008352 5.3e-07 57.8 64 51.6
ClCG07G013030 Citrullus lanatus HOM05D006749 ORTHO05D008352 5.3e-07 57.8 49 53.1
Dinv38048 Davidia involucrata HOM05D006749 ORTHO05D008352 5.3e-07 57.8 49 53.1
Eucgr.J02992 Eucalyptus grandis HOM05D006749 ORTHO05D008352 5.3e-07 57.8 49 53.1
Dinv30512 Davidia involucrata HOM05D006749 ORTHO05D008352 6.9e-07 57.4 49 53.1
Gohir.A06G188200 Gossypium hirsutum HOM05D006749 ORTHO05D008352 6.9e-07 57.4 49 51.0
Gohir.D06G194300 Gossypium hirsutum HOM05D006749 ORTHO05D008352 6.9e-07 57.4 49 51.0
Gorai.010G228100 Gossypium raimondii HOM05D006749 ORTHO05D008352 6.9e-07 57.4 49 51.0
Lj5C60T11 Lonicera japonica HOM05D006749 ORTHO05D008352 9.1e-07 57.0 71 42.3
Atru.chr1.3269 Acer truncatum HOM05D006749 ORTHO05D008352 1.2e-06 56.6 49 51.0
CDE04G2662 Ceratophyllum demersum HOM05D006749 ORTHO05D008352 1.2e-06 56.6 49 46.9
Glyma.13G359600 Glycine max HOM05D006749 ORTHO05D008352 1.5e-06 56.2 49 49.0
Nn3g16958 Nelumbo nucifera HOM05D006749 ORTHO05D008352 1.5e-06 56.2 49 51.0
Peaxi162Scf00034g00085 Petunia axillaris HOM05D006749 ORTHO05D008352 1.5e-06 56.2 47 51.1
HPP92_021740 Vanilla planifolia HOM05D006749 ORTHO05D008352 1.5e-06 56.2 50 48.0
Actinidia08976 Actinidia chinensis HOM05D006749 ORTHO05D008352 2.0e-06 55.8 49 51.0
ECA248G2906 Erigeron canadensis HOM05D006749 ORTHO05D008352 2.0e-06 55.8 47 51.1
Rhsim12G0197800 Rhododendron simsii HOM05D006749 ORTHO05D008352 2.0e-06 55.8 71 39.4
Aqoxy7G01745 Aquilegia oxysepala HOM05D001061 ORTHO05D007103 2.6e-06 55.5 49 44.9
Nitab4.5_0002438g0020 Nicotiana tabacum HOM05D006749 ORTHO05D008352 2.6e-06 55.5 49 46.9
Nitab4.5_0008982g0020 Nicotiana tabacum HOM05D006749 ORTHO05D008352 2.6e-06 55.5 49 46.9
Prupe.3G071400 Prunus persica HOM05D006749 ORTHO05D008352 2.6e-06 55.5 71 40.8
Lsat_1_v5_gn_4_103720 Lactuca sativa HOM05D006749 ORTHO05D008352 3.4e-06 55.1 73 41.1
Medtr2g102210 Medicago truncatula HOM05D006749 ORTHO05D008352 4.5e-06 54.7 49 49.0
Psat5g299040 Pisum sativum HOM05D006749 ORTHO05D008352 4.5e-06 54.7 49 49.0
Potri.001G180000 Populus trichocarpa HOM05D006749 ORTHO05D008352 4.5e-06 54.7 47 51.1
arahy.Tifrunner.gnm1.ann1.8GL56R Arachis hypogaea HOM05D006749 ORTHO05D008352 5.9e-06 54.3 49 49.0
arahy.Tifrunner.gnm1.ann1.SZQK1H Arachis hypogaea HOM05D006749 ORTHO05D008352 5.9e-06 54.3 49 49.0
arahy.Tifrunner.gnm1.ann1.TALZ6N Arachis hypogaea HOM05D006749 ORTHO05D008352 5.9e-06 54.3 49 49.0
CAN.G572.47 Capsicum annuum HOM05D006749 ORTHO05D008352 5.9e-06 54.3 49 40.8
CiPaw.02G151100 Carya illinoinensis HOM05D006749 ORTHO05D008352 5.9e-06 54.3 49 46.9
Lj3g0002516 Lotus japonicus HOM05D006749 ORTHO05D008352 5.9e-06 54.3 49 46.9
Sabra01G0146900 Salix brachista HOM05D006749 ORTHO05D008352 5.9e-06 54.3 47 51.1
PGR102G0966 Punica granatum HOM05D006749 ORTHO05D008352 7.7e-06 53.9 49 53.1
TAR626G0678 Trochodendron aralioides HOM05D006749 ORTHO05D008352 7.7e-06 53.9 49 46.9


User provided reference genes

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