Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1750.7 897 100.0
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1648.3 900 94.1
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1640.2 897 93.6
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1624.8 916 91.6
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1582.8 897 90.3
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1572.8 897 89.0
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1570.1 904 89.4
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1569.7 898 89.8
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1558.1 920 87.5
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1555.0 897 88.3
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1550.0 895 88.6
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1529.6 904 87.5
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1527.3 904 86.8
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1488.4 943 82.9
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1459.9 907 83.4
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1437.2 927 79.8
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1259.6 891 73.1
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1257.3 902 72.4
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1243.4 891 73.0
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1242.6 891 72.8
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1241.5 905 71.9
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1239.2 891 71.4
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1238.8 902 72.1
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1231.9 903 71.8
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1229.9 906 71.0
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1228.8 904 70.4
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1226.1 903 71.4
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1223.4 874 73.0
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1219.9 917 70.7
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1219.5 874 72.5
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1217.2 907 69.7
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1214.5 895 70.6
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1213.7 891 70.9
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1212.6 925 68.8
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1211.1 891 70.6
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1210.7 875 72.0
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1208.0 882 71.0
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1206.8 895 70.1
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1205.7 873 71.9
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1204.5 874 71.4
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1204.1 898 70.0
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1203.7 892 70.6
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1203.7 891 70.5
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1203.0 873 70.9
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1201.0 900 70.9
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1201.0 900 69.4
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1194.5 891 70.1
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1192.2 914 69.3
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1190.3 895 69.6
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1189.1 915 68.5
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1186.8 896 69.3
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1184.1 896 69.1
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1181.4 872 70.4
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1180.2 896 70.2
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1173.7 899 67.9
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1173.3 908 68.3
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1171.8 882 69.7
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1167.5 881 68.6
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1166.8 907 67.9
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1166.0 898 66.6
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1165.6 876 70.9
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1163.7 896 68.0
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1162.5 903 67.8
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1159.8 897 68.6
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1159.1 898 67.9
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1159.1 899 67.5
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1158.7 897 68.5
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1157.9 882 69.2
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1157.5 880 69.0
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1157.1 897 68.5
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1157.1 901 67.8
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1157.1 882 68.3
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1150.2 929 66.2
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1149.8 899 67.4
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1148.7 903 66.7
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1145.6 902 67.2
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1144.0 938 65.4
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1142.1 901 67.5
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1140.9 879 66.8
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1137.5 854 68.7
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1137.1 889 66.3
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1135.2 875 68.2
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1132.9 899 66.9
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1130.9 858 69.0
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1129.4 903 66.7
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1127.9 914 65.5
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1127.5 884 66.9
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1124.8 913 64.6
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1124.4 872 66.6
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1122.5 899 66.5
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1119.8 901 66.7
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1117.8 855 68.3
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1115.5 906 66.4
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1114.0 858 67.6
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1114.0 929 65.7
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1100.9 859 67.9
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1096.6 939 63.3
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1093.6 896 65.4
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1093.6 891 64.0
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1084.3 994 61.5
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1081.6 871 63.9
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 1.6e-310 1069.3 899 64.3
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 2.7e-310 1068.5 908 63.5
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 7.9e-310 1067.0 1007 58.8
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 8.2e-307 1057.0 896 63.2
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 5.3e-306 1054.3 792 68.4
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 6.9e-306 1053.9 920 60.5
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.4e-303 1046.2 841 64.6
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 4.2e-303 1044.6 870 63.3
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 2.1e-294 1015.8 889 60.4
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 4.0e-285 984.9 904 58.2
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 2.7e-278 962.2 906 60.0
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 6.3e-275 951.0 748 65.8
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 6.8e-269 931.0 962 56.7
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 1.5e-268 929.9 750 64.7
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 5.4e-266 921.4 729 67.8
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 2.6e-260 902.5 729 66.1
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 3.4e-260 902.1 878 53.3
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 1.9e-258 896.3 909 57.1
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 2.4e-258 896.0 599 74.3
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.8e-254 882.5 505 82.4
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 2.0e-252 876.3 873 53.8
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 9.5e-247 857.4 875 53.6
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 5.4e-234 815.1 705 61.7
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 2.9e-179 633.3 671 53.4
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 4.4e-175 619.4 371 79.0
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 8.2e-174 615.1 384 76.3
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 2.9e-171 606.7 352 82.4
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.5e-167 594.3 341 81.5
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.2e-163 580.5 360 76.7
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 5.0e-163 579.3 572 58.2
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.7e-148 530.4 552 58.3
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 8.9e-144 515.4 463 60.5
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 9.5e-138 495.4 884 37.1
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 9.2e-133 478.8 706 41.5
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 1.9e-130 471.1 984 35.5
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 4.3e-130 469.9 292 82.5
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 6.6e-123 446.0 305 70.8
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.9e-107 393.7 461 56.6
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 5.3e-104 383.3 544 47.2
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 3.0e-99 367.5 995 30.7
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 1.0e-83 315.8 606 38.4
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 3.9e-75 287.3 165 81.2
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 5.9e-71 273.5 354 52.8
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 3.5e-63 247.7 147 93.2
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 1.2e-50 206.1 329 39.8
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 2.1e-44 185.3 104 84.6
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.9e-37 162.2 107 73.8
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 2.3e-35 155.2 107 67.3
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 1.5e-29 136.0 83 73.5
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 2.0e-18 99.0 61 73.8
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 7.5e-18 97.1 65 66.2
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 2.7e-15 88.6 77 57.1
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 3.3e-13 81.6 72 55.6
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.2e-12 79.7 45 80.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.3e-11 75.5 88 48.9
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 8.9e-11 73.6 66 53.0
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 3.4e-10 71.6 53 71.7
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 7.6e-10 70.5 64 56.2
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 1.3e-09 69.7 97 50.5
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 1.4e-08 66.2 52 61.5
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 2.4e-08 65.5 58 56.9
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 2.3e-06 58.9 39 64.1
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 3.9e-06 58.2 47 63.8


User provided reference genes

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