Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 3.5e-194 681.4 336 100.0
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 4.7e-138 495.0 300 84.0
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 4.2e-131 471.9 292 82.5
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 1.0e-129 467.2 292 81.5
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 1.0e-129 467.2 292 81.5
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 3.0e-129 465.7 292 81.2
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 6.7e-129 464.5 292 81.5
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 2.8e-127 459.1 292 80.1
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 3.7e-127 458.8 292 80.1
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 1.1e-126 457.2 297 78.8
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 1.8e-126 456.4 292 79.8
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 5.3e-126 454.9 292 79.5
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 7.0e-126 454.5 292 79.5
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 1.2e-125 453.8 292 79.1
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 2.5e-123 446.0 297 75.8
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 2.7e-122 442.6 292 77.1
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 1.3e-119 433.7 292 77.4
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 5.9e-117 424.9 297 71.4
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 1.7e-116 423.3 297 71.7
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 1.9e-115 419.9 297 71.7
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 2.5e-115 419.5 297 70.7
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 3.2e-115 419.1 297 70.4
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 7.2e-115 417.9 297 70.7
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 9.4e-115 417.5 292 71.9
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 2.1e-114 416.4 297 70.0
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 2.1e-114 416.4 297 70.4
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 2.7e-114 416.0 288 71.9
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 4.7e-114 415.2 292 71.9
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 6.1e-114 414.8 298 69.8
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 6.1e-114 414.8 297 70.4
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 1.0e-113 414.1 297 69.7
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 1.0e-113 414.1 311 67.8
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 1.0e-113 414.1 297 70.7
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 2.3e-113 412.9 292 70.9
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 4.0e-113 412.1 297 69.0
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 4.0e-113 412.1 293 70.0
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 1.5e-112 410.2 292 70.2
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 2.0e-112 409.8 297 68.7
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 3.4e-112 409.1 292 70.5
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 4.4e-112 408.7 297 68.0
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 5.7e-112 408.3 297 69.0
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 7.5e-112 407.9 297 70.4
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 7.5e-112 407.9 297 68.4
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 1.7e-111 406.8 297 68.4
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 3.7e-111 405.6 297 67.7
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 4.8e-111 405.2 297 69.0
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 4.8e-111 405.2 297 68.7
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 6.3e-111 404.8 297 69.0
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 6.3e-111 404.8 297 68.7
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 6.3e-111 404.8 297 68.7
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 8.3e-111 404.4 293 70.0
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 8.3e-111 404.4 297 69.0
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 8.3e-111 404.4 297 67.0
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 1.1e-110 404.1 297 67.7
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 1.1e-110 404.1 297 68.4
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.1e-110 404.1 297 68.0
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 1.8e-110 403.3 297 68.0
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 3.1e-110 402.5 297 69.0
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 3.1e-110 402.5 297 68.4
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 3.1e-110 402.5 297 68.4
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 5.4e-110 401.7 297 68.0
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 5.4e-110 401.7 297 67.0
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 5.4e-110 401.7 297 68.0
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 7.0e-110 401.4 297 68.7
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 1.2e-109 400.6 297 68.0
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 1.2e-109 400.6 297 68.0
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 1.2e-109 400.6 297 68.0
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 1.6e-109 400.2 292 68.5
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 4.5e-109 398.7 297 68.0
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 4.5e-109 398.7 297 67.3
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 7.7e-109 397.9 297 67.3
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 2.3e-108 396.4 301 66.8
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.3e-108 396.4 302 66.2
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 2.9e-108 396.0 297 68.4
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 5.0e-108 395.2 297 68.0
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 8.6e-108 394.4 299 67.9
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 8.6e-108 394.4 292 68.2
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 8.6e-108 394.4 297 66.7
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 8.6e-108 394.4 297 66.7
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 1.1e-107 394.0 297 67.0
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 1.9e-107 393.3 297 66.7
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 2.5e-107 392.9 297 66.3
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 5.5e-107 391.7 297 64.6
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 7.2e-107 391.3 297 66.7
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 9.5e-107 391.0 311 64.3
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 1.6e-106 390.2 297 65.3
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 2.8e-106 389.4 297 66.7
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 4.7e-106 388.7 297 65.7
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 6.1e-106 388.3 297 66.0
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 6.1e-106 388.3 297 66.0
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 1.4e-105 387.1 297 65.3
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 1.4e-105 387.1 297 65.7
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 1.4e-105 387.1 297 66.0
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 1.8e-105 386.7 302 66.2
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 6.8e-105 384.8 297 65.0
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 8.9e-105 384.4 297 65.3
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 2.6e-104 382.9 297 65.0
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 7.5e-104 381.3 297 65.7
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 9.8e-104 380.9 297 64.3
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 4.9e-103 378.6 297 64.3
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 5.4e-102 375.2 297 62.0
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 1.2e-101 374.0 292 64.0
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 2.0e-101 373.2 292 63.7
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 2.3e-100 369.8 288 65.6
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 2.3e-100 369.8 292 65.1
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 5.0e-100 368.6 297 64.0
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 5.0e-100 368.6 297 64.0
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 6.6e-100 368.2 303 62.4
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 2.5e-99 366.3 293 64.2
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 2.5e-99 366.3 293 64.2
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 3.3e-99 365.9 270 67.8
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 1.2e-98 364.0 326 57.7
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 1.8e-97 360.1 320 60.0
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 3.1e-97 359.4 296 63.9
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 3.1e-97 359.4 297 62.6
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 3.1e-97 359.4 297 60.6
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 4.4e-96 355.5 297 62.0
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 4.4e-96 355.5 297 62.0
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 7.5e-96 354.8 292 63.0
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 2.4e-94 349.7 297 62.3
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.3e-92 344.0 297 59.9
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 3.9e-92 342.4 290 60.3
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 4.4e-88 328.9 297 59.3
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 9.8e-88 327.8 297 58.9
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 5.4e-86 322.0 297 55.6
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 5.1e-84 315.5 299 53.8
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 1.1e-83 314.3 292 55.8
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 1.6e-74 283.9 296 49.0
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 1.4e-70 270.8 141 90.1
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 6.2e-66 255.4 140 85.0
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 3.1e-65 253.1 142 81.0
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 3.3e-59 233.0 186 64.0
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 2.5e-46 190.3 175 57.7
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 1.4e-38 164.5 249 39.8
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 7.1e-38 162.2 252 36.5
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 1.3e-36 157.9 100 72.0
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 3.3e-35 153.3 144 55.6
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 1.7e-31 141.0 192 44.3
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 3.6e-29 133.3 229 34.9
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 7.4e-27 125.6 93 62.4
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 7.2e-22 109.0 100 49.0
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 7.0e-09 65.9 85 43.5
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.0e-07 62.0 193 29.0
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 5.0e-07 59.7 82 41.5
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.5e-06 57.4 111 38.7


User provided reference genes

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