Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g47770 Brassica carinata HOM05D003349 ORTHO05D003898 3.7e-189 664.8 369 100.0
A01p41230 Brassica napus HOM05D003349 ORTHO05D003898 7.3e-161 570.9 384 87.8
BNapus_Darmor_BZH_scaffold_78p00480 Brassica napus HOM05D003349 ORTHO05D003898 7.3e-161 570.9 384 87.8
BraA01t04546Z Brassica rapa HOM05D003349 ORTHO05D003898 9.9e-158 560.5 384 86.7
BolC1t05788H Brassica oleracea HOM05D003349 ORTHO05D003898 1.7e-133 479.9 417 71.0
BraA05t23079Z Brassica rapa HOM05D003349 ORTHO05D003898 8.5e-125 451.1 458 60.3
A05p43390 Brassica napus HOM05D003349 ORTHO05D003898 9.4e-124 447.6 459 59.5
C05p63090 Brassica napus HOM05D003349 ORTHO05D003898 3.3e-121 439.1 458 59.6
BolC5t34961H Brassica oleracea HOM05D003349 ORTHO05D003898 3.3e-121 439.1 458 59.4
Sp3g02940 Schrenkiella parvula HOM05D003349 ORTHO05D003898 3.3e-121 439.1 455 58.5
BcaC05g29887 Brassica carinata HOM05D003349 ORTHO05D003898 4.3e-121 438.7 458 59.6
BcaC05g30298 Brassica carinata HOM05D003349 ORTHO05D003898 2.8e-120 436.0 464 58.4
Thhalv10022309m.g Eutrema salsugineum HOM05D003349 ORTHO05D003898 2.4e-119 433.0 473 56.4
AL3G13880 Arabidopsis lyrata HOM05D003349 ORTHO05D003898 1.8e-114 416.8 475 54.5
AT3G03970 Arabidopsis thaliana HOM05D003349 ORTHO05D003898 5.1e-114 415.2 475 55.2
Carub.0003s0322 Capsella rubella HOM05D003349 ORTHO05D003898 2.6e-110 402.9 468 54.5
CARHR078110 Cardamine hirsuta HOM05D003349 ORTHO05D003898 6.5e-109 398.3 475 53.9
BcaC05g30237 Brassica carinata HOM05D003349 ORTHO05D003898 4.2e-100 369.0 445 54.2
BolC1t05779H Brassica oleracea HOM05D003349 ORTHO05D003898 3.0e-98 362.8 205 95.1
Aa31LG5G14550 Aethionema arabicum HOM05D003349 ORTHO05D003898 3.3e-84 316.2 475 45.5
THA.LOC104820732 Tarenaya hassleriana HOM05D003349 ORTHO05D003898 1.3e-69 267.7 499 39.7
BcaC05g29361 Brassica carinata HOM05D003349 ORTHO05D003898 1.9e-68 263.8 165 89.7
THA.LOC104802863 Tarenaya hassleriana HOM05D003349 ORTHO05D003898 1.2e-67 261.2 471 42.0
Cpa.g.sc51.107 Carica papaya HOM05D003349 ORTHO05D003898 9.5e-60 235.0 216 57.4
Thecc.05G293700 Theobroma cacao HOM05D003349 ORTHO05D003898 1.6e-59 234.2 211 57.8
Potri.013G058700 Populus trichocarpa HOM05D003349 ORTHO05D003898 1.1e-58 231.5 216 57.4
QL07p020065 Quercus lobata HOM05D003349 ORTHO05D003898 1.1e-58 231.5 208 59.6
CiPaw.09G001500 Carya illinoinensis HOM05D003349 ORTHO05D003898 1.8e-58 230.7 208 59.6
Sp6g02300 Schrenkiella parvula HOM05D003349 ORTHO05D003898 1.8e-58 230.7 213 57.3
Gohir.A11G259100 Gossypium hirsutum HOM05D003349 ORTHO05D003898 2.3e-58 230.3 216 56.5
Gorai.007G289100 Gossypium raimondii HOM05D003349 ORTHO05D003898 3.1e-58 229.9 216 56.0
TWI34G0012 Tripterygium wilfordii HOM05D003349 ORTHO05D003898 4.0e-58 229.6 213 57.7
COL.COLO4_13609 Corchorus olitorius HOM05D003349 ORTHO05D003898 5.2e-58 229.2 216 55.6
Sabra19G0041800 Salix brachista HOM05D003349 ORTHO05D003898 5.2e-58 229.2 216 56.9
TWI60G1263 Tripterygium wilfordii HOM05D003349 ORTHO05D003898 5.2e-58 229.2 213 57.7
Gohir.D11G269200 Gossypium hirsutum HOM05D003349 ORTHO05D003898 6.8e-58 228.8 216 56.0
Lalb_Chr21g0317171 Lupinus albus HOM05D003349 ORTHO05D003898 6.8e-58 228.8 207 59.9
Sabra13G0052200 Salix brachista HOM05D003349 ORTHO05D003898 6.8e-58 228.8 216 57.4
Eucgr.A02093 Eucalyptus grandis HOM05D003349 ORTHO05D003898 8.9e-58 228.4 211 57.3
Potri.019G033900 Populus trichocarpa HOM05D003349 ORTHO05D003898 1.5e-57 227.6 216 56.0
Haze_19412 Corylus avellana HOM05D003349 ORTHO05D003898 2.0e-57 227.3 235 53.6
Duzib128G1865 Durio zibethinus HOM05D003349 ORTHO05D003898 2.0e-57 227.3 216 56.0
CiPaw.06G089600 Carya illinoinensis HOM05D003349 ORTHO05D003898 2.6e-57 226.9 244 52.9
Duzib177G0419 Durio zibethinus HOM05D003349 ORTHO05D003898 2.6e-57 226.9 216 56.5
Prupe.7G003500 Prunus persica HOM05D003349 ORTHO05D003898 4.4e-57 226.1 208 57.7
THA.LOC104821510 Tarenaya hassleriana HOM05D003349 ORTHO05D003898 5.8e-57 225.7 213 57.7
Manes.08G150100 Manihot esculenta HOM05D003349 ORTHO05D003898 7.6e-57 225.3 216 56.9
Lalb_Chr02g0157061 Lupinus albus HOM05D003349 ORTHO05D003898 9.9e-57 224.9 206 57.8
BraA09t35838Z Brassica rapa HOM05D003349 ORTHO05D003898 1.3e-56 224.6 214 57.5
Ciclev10019371m.g Citrus clementina HOM05D003349 ORTHO05D003898 1.3e-56 224.6 211 58.3
MD14G1002300 Malus domestica HOM05D003349 ORTHO05D003898 1.3e-56 224.6 208 57.7
PGR042G2987 Punica granatum HOM05D003349 ORTHO05D003898 1.3e-56 224.6 216 55.6
BcaB01g02049 Brassica carinata HOM05D003349 ORTHO05D003898 1.7e-56 224.2 214 57.9
Carub.0002s0958 Capsella rubella HOM05D003349 ORTHO05D003898 1.7e-56 224.2 213 55.9
BcaNung04050 Brassica carinata HOM05D003349 ORTHO05D003898 2.2e-56 223.8 214 57.5
C09p01910 Brassica napus HOM05D003349 ORTHO05D003898 2.2e-56 223.8 214 57.5
BolC9t53126H Brassica oleracea HOM05D003349 ORTHO05D003898 2.2e-56 223.8 214 57.5
A09p01870 Brassica napus HOM05D003349 ORTHO05D003898 2.9e-56 223.4 214 57.5
Dinv37011 Davidia involucrata HOM05D003349 ORTHO05D003898 2.9e-56 223.4 216 56.5
AT1G54385 Arabidopsis thaliana HOM05D003349 ORTHO05D003898 4.9e-56 222.6 213 56.3
Manes.09G142100 Manihot esculenta HOM05D003349 ORTHO05D003898 4.9e-56 222.6 211 56.9
Aqoxy1G00500 Aquilegia oxysepala HOM05D003349 ORTHO05D003898 1.1e-55 221.5 248 51.6
FvH4_1g28060 Fragaria vesca HOM05D003349 ORTHO05D003898 1.1e-55 221.5 208 56.7
FAN19G0867 Fragaria x ananassa HOM05D003349 ORTHO05D003898 1.1e-55 221.5 208 56.7
FAN23G0882 Fragaria x ananassa HOM05D003349 ORTHO05D003898 1.1e-55 221.5 246 51.6
Thhalv10028548m.g Eutrema salsugineum HOM05D003349 ORTHO05D003898 1.4e-55 221.1 243 51.9
VMungo1383G1871 Vigna mungo HOM05D003349 ORTHO05D003898 1.4e-55 221.1 208 56.2
Glyma.19G110600 Glycine max HOM05D003349 ORTHO05D003898 1.9e-55 220.7 208 56.2
FAN26G3194 Fragaria x ananassa HOM05D003349 ORTHO05D003898 3.2e-55 219.9 208 56.2
Rhsim03G0001200 Rhododendron simsii HOM05D003349 ORTHO05D003898 3.2e-55 219.9 217 56.7
Glyma.16G152900 Glycine max HOM05D003349 ORTHO05D003898 5.4e-55 219.2 213 56.8
RcHm_v2.0_Chr3g0497191 Rosa chinensis HOM05D003349 ORTHO05D003898 5.4e-55 219.2 208 56.2
Atru.chr2.1365 Acer truncatum HOM05D003349 ORTHO05D003898 7.1e-55 218.8 216 55.6
Actinidia30557 Actinidia chinensis HOM05D003349 ORTHO05D003898 9.2e-55 218.4 217 54.8
Hma1.2p1_0376F.1_g139170 Hydrangea macrophylla HOM05D003349 ORTHO05D003898 9.2e-55 218.4 248 50.0
Lj2g0007320 Lotus japonicus HOM05D003349 ORTHO05D003898 2.1e-54 217.2 210 56.7
Phvul.004G079400 Phaseolus vulgaris HOM05D003349 ORTHO05D003898 2.7e-54 216.9 254 51.6
Actinidia22087 Actinidia chinensis HOM05D003349 ORTHO05D003898 3.5e-54 216.5 211 55.5
CANSAT78G1787 Cannabis sativa HOM05D003349 ORTHO05D003898 4.6e-54 216.1 208 55.8
Glyma.02G071700 Glycine max HOM05D003349 ORTHO05D003898 4.6e-54 216.1 222 56.3
Lalb_Chr06g0173961 Lupinus albus HOM05D003349 ORTHO05D003898 6.0e-54 215.7 213 57.7
vmacro12571 Vaccinium macrocarpon HOM05D003349 ORTHO05D003898 6.0e-54 215.7 217 55.8
Lj1g0027644 Lotus japonicus HOM05D003349 ORTHO05D003898 7.8e-54 215.3 209 56.5
Sed0027207 Sechium edule HOM05D003349 ORTHO05D003898 7.8e-54 215.3 211 55.9
CARHR055490 Cardamine hirsuta HOM05D003349 ORTHO05D003898 1.0e-53 214.9 213 54.0
PSO339G2750 Papaver somniferum HOM05D003349 ORTHO05D003898 1.3e-53 214.5 206 55.8
PSO384G0567 Papaver somniferum HOM05D003349 ORTHO05D003898 1.3e-53 214.5 206 55.8
GSVIVG01033391001 Vitis vinifera HOM05D003349 ORTHO05D003898 1.3e-53 214.5 215 53.0
Glyma.16G041800 Glycine max HOM05D003349 ORTHO05D003898 1.7e-53 214.2 208 53.8
Phvul.001G110000 Phaseolus vulgaris HOM05D003349 ORTHO05D003898 1.7e-53 214.2 208 52.9
arahy.Tifrunner.gnm1.ann1.GFD0T8 Arachis hypogaea HOM05D003349 ORTHO05D003898 3.0e-53 213.4 208 55.8
arahy.Tifrunner.gnm1.ann1.N26BUN Arachis hypogaea HOM05D003349 ORTHO05D003898 3.0e-53 213.4 208 55.8
FvH4_5g28880 Fragaria vesca HOM05D003349 ORTHO05D003898 3.9e-53 213.0 208 54.8
FAN18G3983 Fragaria x ananassa HOM05D003349 ORTHO05D003898 5.1e-53 212.6 208 54.8
Lj1A1137T83 Lonicera japonica HOM05D003349 ORTHO05D003898 5.1e-53 212.6 211 55.5
Psat1g096120 Pisum sativum HOM05D003349 ORTHO05D003898 6.6e-53 212.2 210 54.8
MELO3C008798.2 Cucumis melo HOM05D003349 ORTHO05D003898 8.6e-53 211.8 211 54.0
CsaV3_4G013310 Cucumis sativus L. HOM05D003349 ORTHO05D003898 1.1e-52 211.5 211 54.0
Nn2g15886 Nelumbo nucifera HOM05D003349 ORTHO05D003898 1.1e-52 211.5 216 53.7
PGR142G2675 Punica granatum HOM05D003349 ORTHO05D003898 1.1e-52 211.5 212 54.2
TPR.G34626 Trifolium pratense HOM05D003349 ORTHO05D003898 1.1e-52 211.5 210 53.8
DCAR_019880 Daucus carota HOM05D003349 ORTHO05D003898 1.5e-52 211.1 218 55.0
Lj2A357T88 Lonicera japonica HOM05D003349 ORTHO05D003898 1.5e-52 211.1 219 51.6
CSS0039180 Camellia sinensis var. sinensis HOM05D003349 ORTHO05D003898 1.9e-52 210.7 209 55.5
ClCG04G005280 Citrullus lanatus HOM05D003349 ORTHO05D003898 3.3e-52 209.9 211 53.6
Oeu012406.1 Olea europaea HOM05D003349 ORTHO05D003898 4.3e-52 209.5 211 55.9
TAR636G3347 Trochodendron aralioides HOM05D003349 ORTHO05D003898 4.3e-52 209.5 216 53.7
AUR62032685 Chenopodium quinoa HOM05D003349 ORTHO05D003898 9.6e-52 208.4 209 53.6
TAR633G2041 Trochodendron aralioides HOM05D003349 ORTHO05D003898 1.2e-51 208.0 208 54.3
SalBow6G1268 Salvia bowleyana HOM05D003349 ORTHO05D003898 2.1e-51 207.2 211 55.0
Medtr6g032885 Medicago truncatula HOM05D003349 ORTHO05D003898 3.6e-51 206.5 213 52.1
Ca_21768_v3 Cicer arietinum L. HOM05D003349 ORTHO05D003898 4.7e-51 206.1 213 53.1
Ca_25618_v3 Cicer arietinum L. HOM05D003349 ORTHO05D003898 6.2e-51 205.7 213 54.0
AUR62032062 Chenopodium quinoa HOM05D003349 ORTHO05D003898 8.1e-51 205.3 209 53.1
DCAR_009680 Daucus carota HOM05D003349 ORTHO05D003898 1.1e-50 204.9 211 54.0
ECA238G0201 Erigeron canadensis HOM05D003349 ORTHO05D003898 1.8e-50 204.1 225 50.2
TAR623G1645 Trochodendron aralioides HOM05D003349 ORTHO05D003898 1.8e-50 204.1 211 54.0
Sed0005648 Sechium edule HOM05D003349 ORTHO05D003898 4.0e-50 203.0 211 52.6
Hund19241 Selenicereus undatus HOM05D003349 ORTHO05D003898 4.0e-50 203.0 211 52.6
SGA_v2.0_scaffold24G10518 Striga asiatica HOM05D003349 ORTHO05D003898 4.0e-50 203.0 208 54.3
ECA285G0003 Erigeron canadensis HOM05D003349 ORTHO05D003898 1.5e-49 201.1 254 47.2
Sc13g0002710 Simmondsia chinensis HOM05D003349 ORTHO05D003898 1.5e-49 201.1 223 48.9
CANSAT56G0778 Cannabis sativa HOM05D003349 ORTHO05D003898 2.0e-49 200.7 208 54.8
Nn7g35824 Nelumbo nucifera HOM05D003349 ORTHO05D003898 2.6e-49 200.3 226 50.9
EL10Ac3g06814 Beta vulgaris HOM05D003349 ORTHO05D003898 3.4e-49 199.9 211 51.2
Lsat_1_v5_gn_2_57641 Lactuca sativa HOM05D003349 ORTHO05D003898 3.4e-49 199.9 218 51.8
Migut.J01894 Erythranthe guttata HOM05D003349 ORTHO05D003898 4.4e-49 199.5 211 54.0
HanXRQChr01g0024711 Helianthus annuus HOM05D003349 ORTHO05D003898 1.3e-48 198.0 211 50.7
Oeu060005.1 Olea europaea HOM05D003349 ORTHO05D003898 1.7e-48 197.6 211 52.1
Peaxi162Scf00076g01031 Petunia axillaris HOM05D003349 ORTHO05D003898 3.8e-48 196.4 211 52.6
SGA_v2.0_scaffold118G32450 Striga asiatica HOM05D003349 ORTHO05D003898 3.8e-48 196.4 210 54.3
arahy.Tifrunner.gnm1.ann1.L5U228 Arachis hypogaea HOM05D003349 ORTHO05D003898 4.9e-48 196.1 210 53.3
PGSC0003DMG400008643 Solanum tuberosum HOM05D003349 ORTHO05D003898 4.9e-48 196.1 216 51.9
CAN.G317.13 Capsicum annuum HOM05D003349 ORTHO05D003898 6.4e-48 195.7 217 51.2
Nitab4.5_0002825g0010 Nicotiana tabacum HOM05D003349 ORTHO05D003898 6.4e-48 195.7 211 52.1
TAR369G0075 Trochodendron aralioides HOM05D003349 ORTHO05D003898 6.4e-48 195.7 234 48.7
MSTRG.19938 Avicennia marina HOM05D003349 ORTHO05D003898 1.1e-47 194.9 211 53.6
Cc06_g22870 Coffea canephora HOM05D003349 ORTHO05D003898 1.1e-47 194.9 216 50.9
Lsat_1_v5_gn_1_59620 Lactuca sativa HOM05D003349 ORTHO05D003898 1.1e-47 194.9 209 50.2
Sc19g0006470 Simmondsia chinensis HOM05D003349 ORTHO05D003898 1.4e-47 194.5 214 49.1
Solyc03g062700.4 Solanum lycopersicum HOM05D003349 ORTHO05D003898 1.4e-47 194.5 211 51.7
BraA09t41584Z Brassica rapa HOM05D003349 ORTHO05D003898 2.4e-47 193.7 130 83.1
Sopen03g015010 Solanum pennellii HOM05D003349 ORTHO05D003898 3.2e-47 193.4 211 51.7
arahy.Tifrunner.gnm1.ann1.CJ7Z8Q Arachis hypogaea HOM05D003349 ORTHO05D003898 4.2e-47 193.0 210 52.9
Nitab4.5_0000001g0070 Nicotiana tabacum HOM05D003349 ORTHO05D003898 4.2e-47 193.0 216 50.0
HanXRQChr09g0266371 Helianthus annuus HOM05D003349 ORTHO05D003898 9.3e-47 191.8 211 49.3
AL1G64640 Arabidopsis lyrata HOM05D003349 ORTHO05D003898 3.5e-46 189.9 212 49.5
unitig_899.g15643 Utricularia gibba HOM05D003349 ORTHO05D003898 3.5e-46 189.9 208 51.9
FAN13G1757 Fragaria x ananassa HOM05D003349 ORTHO05D003898 4.6e-46 189.5 249 44.6
HanXRQChr16g0523881 Helianthus annuus HOM05D003349 ORTHO05D003898 1.1e-44 184.9 213 49.3
HanXRQChr03g0090421 Helianthus annuus HOM05D003349 ORTHO05D003898 2.1e-43 180.6 209 48.3
Os11g0580000 Oryza sativa ssp. japonica HOM05D003349 ORTHO05D003898 1.3e-40 171.4 208 46.2
CDE07G0844 Ceratophyllum demersum HOM05D003349 ORTHO05D003898 4.9e-40 169.5 205 47.3
Aqoxy2G00587 Aquilegia oxysepala HOM05D003349 ORTHO05D003898 8.4e-40 168.7 209 45.9
HPP92_004178 Vanilla planifolia HOM05D003349 ORTHO05D003898 1.9e-39 167.5 202 45.5
Eucgr.K01495 Eucalyptus grandis HOM05D003349 ORTHO05D003898 2.4e-39 167.2 211 46.4
CDE06G0484 Ceratophyllum demersum HOM05D003349 ORTHO05D003898 3.2e-39 166.8 205 46.8
ATR0697G133 Amborella trichopoda HOM05D003349 ORTHO05D003898 1.3e-37 161.4 226 39.8
Zm00001eb200470 Zea mays HOM05D003349 ORTHO05D003898 1.7e-37 161.0 210 42.4
C05p56450 Brassica napus HOM05D003349 ORTHO05D003898 4.5e-33 146.4 88 94.3
SHI21767 Sapria himalayana HOM05D003349 ORTHO05D003898 2.9e-32 143.7 211 42.7
SEGI_12350 Sequoiadendron giganteum HOM05D003349 ORTHO05D003898 1.9e-31 141.0 211 39.3
BcaNung04531 Brassica carinata HOM05D003349 ORTHO05D003898 2.5e-28 130.6 146 52.1
SEGI_06046 Sequoiadendron giganteum HOM05D003349 ORTHO05D003898 5.3e-26 122.9 244 35.2
Os12g0624800 Oryza sativa ssp. japonica HOM05D003349 ORTHO05D003898 5.8e-25 119.4 207 34.3
SEGI_09484 Sequoiadendron giganteum HOM05D003349 ORTHO05D003898 5.8e-25 119.4 208 36.5
SEGI_29772 Sequoiadendron giganteum HOM05D003349 ORTHO05D003898 5.8e-25 119.4 208 36.5
MD12G1002900 Malus domestica HOM05D003349 ORTHO05D003898 8.4e-24 115.5 140 49.3
arahy.Tifrunner.gnm1.ann1.0MAW8U Arachis hypogaea HOM05D003349 ORTHO05D003898 2.1e-22 110.9 199 38.7
Zm00001eb032360 Zea mays HOM05D003349 ORTHO05D003898 3.5e-22 110.2 216 31.0
Mapoly0001s0286 Marchantia polymorpha HOM05D003349 ORTHO05D003898 1.8e-18 97.8 226 32.3
Pp3c5_7300 Physcomitrium patens HOM05D003349 ORTHO05D003898 1.0e-16 92.0 209 28.2
Pp3c22_2440 Physcomitrium patens HOM05D003349 ORTHO05D003898 6.5e-16 89.4 208 32.2
Pp3c3_27710 Physcomitrium patens HOM05D003349 ORTHO05D003898 1.9e-15 87.8 208 30.8
ATR0605G207 Amborella trichopoda HOM05D003349 ORTHO05D003898 1.2e-14 85.1 185 31.9
SMO364G0157 Selaginella moellendorffii HOM05D003349 ORTHO05D003898 2.1e-14 84.3 206 29.6
AagrBONN_evm.TU.Sc2ySwM_362.243 Anthoceros agrestis HOM05D003349 ORTHO05D003898 1.3e-13 81.6 212 29.7
Pp3c18_19210 Physcomitrium patens HOM05D003349 ORTHO05D003898 5.7e-12 76.3 176 29.0
SMO116G0096 Selaginella moellendorffii HOM05D003118 ORTHO05D003898 3.7e-11 73.6 184 29.9
MD12G1003000 Malus domestica HOM05D003349 ORTHO05D003898 7.2e-07 59.3 37 73.0
AagrBONN_evm.TU.Sc2ySwM_117.2517 Anthoceros agrestis HOM05D003349 ORTHO05D003898 1.2e-06 58.5 94 29.8


User provided reference genes

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