Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g47718 Brassica carinata HOM05D003197 ORTHO05D003769 2.7e-97 358.6 177 100.0
BNapus_Darmor_BZH_scaffold_99p00260 Brassica napus HOM05D003197 ORTHO05D003769 1.3e-62 243.4 168 76.2
BcaC09g47716 Brassica carinata HOM05D003197 ORTHO05D003769 9.0e-40 167.5 87 96.6
BcaC02g06979 Brassica carinata HOM05D003197 ORTHO05D003769 1.2e-39 167.2 94 89.4
A04p34960 Brassica napus HOM05D003197 ORTHO05D003769 1.2e-39 167.2 94 89.4
C04p72860 Brassica napus HOM05D003197 ORTHO05D003769 1.2e-39 167.2 94 89.4
BolC4t28767H Brassica oleracea HOM05D003197 ORTHO05D003769 1.2e-39 167.2 94 89.4
Sp4g29450 Schrenkiella parvula HOM05D003197 ORTHO05D003769 1.2e-39 167.2 94 89.4
BcaC09g47717 Brassica carinata HOM05D003197 ORTHO05D003769 1.5e-39 166.8 96 87.5
Thhalv10001422m.g Eutrema salsugineum HOM05D003197 ORTHO05D003769 1.5e-39 166.8 94 88.3
AL4G47080 Arabidopsis lyrata HOM05D003197 ORTHO05D003769 2.0e-39 166.4 94 87.2
AT2G47510 Arabidopsis thaliana HOM05D003197 ORTHO05D003769 2.0e-39 166.4 94 87.2
AT5G50950 Arabidopsis thaliana HOM05D003197 ORTHO05D003769 2.0e-39 166.4 94 87.2
BcaC02g12803 Brassica carinata HOM05D003197 ORTHO05D003769 2.0e-39 166.4 94 87.2
A05p00410 Brassica napus HOM05D003197 ORTHO05D003769 2.0e-39 166.4 94 87.2
C04p00340 Brassica napus HOM05D003197 ORTHO05D003769 2.0e-39 166.4 94 87.2
BolC4t21676H Brassica oleracea HOM05D003197 ORTHO05D003769 2.0e-39 166.4 94 87.2
Carub.0004s3025 Capsella rubella HOM05D003197 ORTHO05D003769 2.0e-39 166.4 94 87.2
Aa31LG1G28820 Aethionema arabicum HOM05D003197 ORTHO05D003769 2.6e-39 166.0 94 88.3
BolC4t21682H Brassica oleracea HOM05D003197 ORTHO05D000780 2.6e-39 166.0 83 96.4
CARHR142910 Cardamine hirsuta HOM05D003197 ORTHO05D003769 3.4e-39 165.6 94 87.2
BcaB02g08764 Brassica carinata HOM05D003197 ORTHO05D003769 4.4e-39 165.2 94 86.2
BcaB06g29441 Brassica carinata HOM05D003197 ORTHO05D003769 4.4e-39 165.2 94 86.2
C04p00370 Brassica napus HOM05D003197 ORTHO05D000780 4.4e-39 165.2 89 91.0
CARHR257280 Cardamine hirsuta HOM05D003197 ORTHO05D003769 4.4e-39 165.2 94 87.2
Carub.0008s1096 Capsella rubella HOM05D003197 ORTHO05D003769 9.9e-39 164.1 94 85.1
THA.LOC104802185 Tarenaya hassleriana HOM05D003197 ORTHO05D003769 2.2e-38 162.9 94 85.1
AL8G25140 Arabidopsis lyrata HOM05D003197 ORTHO05D003769 6.4e-38 161.4 94 84.0
Rhsim13G0008000 Rhododendron simsii HOM05D003197 ORTHO05D003769 6.4e-38 161.4 94 83.0
Thecc.01G306500 Theobroma cacao HOM05D003197 ORTHO05D003769 6.4e-38 161.4 94 83.0
COL.COLO4_23299 Corchorus olitorius HOM05D003197 ORTHO05D003769 8.4e-38 161.0 94 83.0
CSS0002671 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 1.1e-37 160.6 94 83.0
CSS0038182 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 1.1e-37 160.6 94 83.0
Cfa005865 Carpinus fangiana HOM05D003197 ORTHO05D003769 1.4e-37 160.2 94 81.9
Potri.002G201300 Populus trichocarpa HOM05D003197 ORTHO05D003769 1.4e-37 160.2 94 83.0
Dinv33079 Davidia involucrata HOM05D003197 ORTHO05D003769 1.9e-37 159.8 94 81.9
Psat6g163680 Pisum sativum HOM05D003197 ORTHO05D003769 1.9e-37 159.8 94 81.9
Sabra02G0157600 Salix brachista HOM05D003197 ORTHO05D003769 1.9e-37 159.8 94 81.9
Sc05g0003520 Simmondsia chinensis HOM05D003197 ORTHO05D003769 1.9e-37 159.8 94 81.9
Rhsim07G0104500 Rhododendron simsii HOM05D003197 ORTHO05D003769 2.4e-37 159.5 94 81.9
FvH4_2g26140 Fragaria vesca HOM05D003197 ORTHO05D003769 3.2e-37 159.1 94 81.9
Gohir.A07G126400 Gossypium hirsutum HOM05D003197 ORTHO05D003769 3.2e-37 159.1 94 80.9
Gohir.D07G130500 Gossypium hirsutum HOM05D003197 ORTHO05D003769 3.2e-37 159.1 94 80.9
Gohir.D13G125000 Gossypium hirsutum HOM05D003197 ORTHO05D003769 3.2e-37 159.1 94 80.9
Gorai.001G141300 Gossypium raimondii HOM05D003197 ORTHO05D003769 3.2e-37 159.1 94 80.9
Manes.03G058700 Manihot esculenta HOM05D003197 ORTHO05D003769 3.2e-37 159.1 94 81.9
Manes.05G000300 Manihot esculenta HOM05D003197 ORTHO05D003769 3.2e-37 159.1 94 81.9
RcHm_v2.0_Chr6g0294521 Rosa chinensis HOM05D003197 ORTHO05D003769 3.2e-37 159.1 94 81.9
arahy.Tifrunner.gnm1.ann1.5H6FCE Arachis hypogaea HOM05D003197 ORTHO05D003769 4.2e-37 158.7 94 80.9
arahy.Tifrunner.gnm1.ann1.BU45MS Arachis hypogaea HOM05D003197 ORTHO05D003769 4.2e-37 158.7 94 80.9
Oeu008339.1 Olea europaea HOM05D003197 ORTHO05D003769 4.2e-37 158.7 94 81.9
Phvul.007G217600 Phaseolus vulgaris HOM05D003197 ORTHO05D003769 4.2e-37 158.7 94 81.9
QL12p027709 Quercus lobata HOM05D003197 ORTHO05D003769 4.2e-37 158.7 94 80.9
VMungo0720G1283 Vigna mungo HOM05D003197 ORTHO05D003769 4.2e-37 158.7 94 81.9
Haze_04982 Corylus avellana HOM05D003197 ORTHO05D003769 5.4e-37 158.3 94 81.9
Lj5g0001576 Lotus japonicus HOM05D003197 ORTHO05D003769 5.4e-37 158.3 94 80.9
Nitab4.5_0009662g0010 Nicotiana tabacum HOM05D003197 ORTHO05D003769 5.4e-37 158.3 82 90.2
Cpa.g.sc27.118 Carica papaya HOM05D003197 ORTHO05D003769 7.1e-37 157.9 94 80.9
Ciclev10019838m.g Citrus clementina HOM05D003197 ORTHO05D003769 7.1e-37 157.9 94 80.9
Cc01_g21120 Coffea canephora HOM05D003197 ORTHO05D003769 7.1e-37 157.9 94 79.8
Gorai.004G132900 Gossypium raimondii HOM05D003197 ORTHO05D003769 7.1e-37 157.9 83 89.2
Sed0011546 Sechium edule HOM05D003197 ORTHO05D003769 7.1e-37 157.9 94 80.9
HPP92_013736 Vanilla planifolia HOM05D003197 ORTHO05D003769 7.1e-37 157.9 94 81.9
MELO3C017938.2 Cucumis melo HOM05D003197 ORTHO05D003769 9.3e-37 157.5 94 79.8
CsaV3_4G001010 Cucumis sativus L. HOM05D003197 ORTHO05D003769 9.3e-37 157.5 94 79.8
Lalb_Chr21g0309351 Lupinus albus HOM05D003197 ORTHO05D003769 9.3e-37 157.5 94 80.9
Nitab4.5_0000116g0300 Nicotiana tabacum HOM05D003197 ORTHO05D003769 9.3e-37 157.5 82 90.2
SalBow6G6079 Salvia bowleyana HOM05D003197 ORTHO05D003769 9.3e-37 157.5 94 80.9
Cpa.g.sc151.34 Carica papaya HOM05D003197 ORTHO05D003769 1.2e-36 157.1 94 79.8
Ca_10314_v3 Cicer arietinum L. HOM05D003197 ORTHO05D003769 1.2e-36 157.1 94 80.9
Glyma.02G015700 Glycine max HOM05D003197 ORTHO05D003769 1.2e-36 157.1 94 80.9
Glyma.10G016200 Glycine max HOM05D003197 ORTHO05D003769 1.2e-36 157.1 94 80.9
MD00G1140200 Malus domestica HOM05D003197 ORTHO05D003769 1.2e-36 157.1 94 80.9
TWI59G0305 Tripterygium wilfordii HOM05D003197 ORTHO05D003769 1.2e-36 157.1 94 79.8
MSTRG.18133 Avicennia marina HOM05D003197 ORTHO05D003769 1.6e-36 156.8 94 79.8
Duzib138G1374 Durio zibethinus HOM05D003197 ORTHO05D003769 1.6e-36 156.8 94 80.9
Hund12826 Selenicereus undatus HOM05D003197 ORTHO05D003769 1.6e-36 156.8 115 69.6
Ah.08g213570 Amaranthus hybridus HOM05D003197 ORTHO05D003769 2.1e-36 156.4 94 80.9
CAN.G1280.13 Capsicum annuum HOM05D003197 ORTHO05D003769 2.1e-36 156.4 82 90.2
Peaxi162Scf00362g01196 Petunia axillaris HOM05D003197 ORTHO05D003769 2.1e-36 156.4 82 90.2
TWI23G1200 Tripterygium wilfordii HOM05D003197 ORTHO05D003769 2.1e-36 156.4 94 79.8
unitig_22.g5232 Utricularia gibba HOM05D003197 ORTHO05D003769 2.1e-36 156.4 94 80.9
AUR62008718 Chenopodium quinoa HOM05D003197 ORTHO05D003769 2.7e-36 156.0 86 87.2
Glyma.02G015800 Glycine max HOM05D003197 ORTHO05D003769 2.7e-36 156.0 94 78.7
Gohir.A08G041500 Gossypium hirsutum HOM05D003197 ORTHO05D003769 2.7e-36 156.0 94 79.8
Gohir.D08G051600 Gossypium hirsutum HOM05D003197 ORTHO05D003769 2.7e-36 156.0 94 79.8
Gorai.004G051500 Gossypium raimondii HOM05D003197 ORTHO05D003769 2.7e-36 156.0 94 79.8
HanXRQChr06g0167721 Helianthus annuus HOM05D003197 ORTHO05D003769 2.7e-36 156.0 94 79.8
Nitab4.5_0000803g0020 Nicotiana tabacum HOM05D003197 ORTHO05D003769 2.7e-36 156.0 82 89.0
Nitab4.5_0007413g0010 Nicotiana tabacum HOM05D003197 ORTHO05D003769 2.7e-36 156.0 82 89.0
Peaxi162Scf00001g00341 Petunia axillaris HOM05D003197 ORTHO05D003769 2.7e-36 156.0 82 90.2
HanXRQChr04g0114721 Helianthus annuus HOM05D003197 ORTHO05D003769 3.5e-36 155.6 94 80.9
SGA_v2.0_scaffold334G49028 Striga asiatica HOM05D003197 ORTHO05D003769 3.5e-36 155.6 94 80.9
Aqoxy2G02869 Aquilegia oxysepala HOM05D003197 ORTHO05D003769 4.6e-36 155.2 94 79.8
Lsat_1_v5_gn_8_164740 Lactuca sativa HOM05D003197 ORTHO05D003769 4.6e-36 155.2 94 79.8
TAR636G2764 Trochodendron aralioides HOM05D003197 ORTHO05D003769 4.6e-36 155.2 94 79.8
FAN24G1606 Fragaria x ananassa HOM05D003197 ORTHO05D003769 6.0e-36 154.8 82 90.2
Dinv10044 Davidia involucrata HOM05D003197 ORTHO05D003769 7.9e-36 154.5 94 79.8
Gorai.013G139800 Gossypium raimondii HOM05D003197 ORTHO05D003769 7.9e-36 154.5 82 89.0
Lj5A370G55 Lonicera japonica HOM05D003197 ORTHO05D003769 7.9e-36 154.5 94 78.7
Lalb_Chr02g0146531 Lupinus albus HOM05D003197 ORTHO05D003769 7.9e-36 154.5 94 78.7
ClCG10G011140 Citrullus lanatus HOM05D003197 ORTHO05D003769 1.0e-35 154.1 94 78.7
ECA236G1793 Erigeron canadensis HOM05D003197 ORTHO05D003769 1.0e-35 154.1 94 78.7
Medtr1g087900 Medicago truncatula HOM05D003197 ORTHO05D003769 1.0e-35 154.1 94 79.8
PGR119G1313 Punica granatum HOM05D003197 ORTHO05D003769 1.0e-35 154.1 94 79.8
SGA_v2.0_scaffold2G01379 Striga asiatica HOM05D003197 ORTHO05D003769 1.0e-35 154.1 94 79.8
CiPaw.07G112700 Carya illinoinensis HOM05D003197 ORTHO05D003769 1.3e-35 153.7 94 78.7
FvH4_2g26121 Fragaria vesca HOM05D003197 ORTHO05D003769 1.3e-35 153.7 94 77.7
Hma1.2p1_0494F.1_g165490 Hydrangea macrophylla HOM05D003197 ORTHO05D003769 1.3e-35 153.7 94 78.7
GSVIVG01028056001 Vitis vinifera HOM05D003197 ORTHO05D003769 1.3e-35 153.7 94 79.8
CANSAT80G1297 Cannabis sativa HOM05D003197 ORTHO05D003769 1.7e-35 153.3 94 74.5
Nn3g21574 Nelumbo nucifera HOM05D003197 ORTHO05D003769 1.7e-35 153.3 94 77.7
GSVIVG01031185001 Vitis vinifera HOM05D003197 ORTHO05D003769 1.7e-35 153.3 94 77.7
Atru.chr6.1651 Acer truncatum HOM05D003197 ORTHO05D003769 2.3e-35 152.9 94 75.5
ATR0796G113 Amborella trichopoda HOM05D003197 ORTHO05D003769 2.3e-35 152.9 94 78.7
CAN.G862.60 Capsicum annuum HOM05D003197 ORTHO05D003769 3.0e-35 152.5 82 89.0
Manes.01G223200 Manihot esculenta HOM05D003197 ORTHO05D003769 3.0e-35 152.5 94 77.7
Hund05454 Selenicereus undatus HOM05D003197 ORTHO05D003769 3.9e-35 152.1 94 77.7
TAR365G0397 Trochodendron aralioides HOM05D003197 ORTHO05D003769 3.9e-35 152.1 94 78.7
CDE12G0403 Ceratophyllum demersum HOM05D003197 ORTHO05D003769 5.1e-35 151.8 94 76.6
Migut.D00123 Erythranthe guttata HOM05D003197 ORTHO05D003769 5.1e-35 151.8 94 77.7
PSO731G0008 Papaver somniferum HOM05D003197 ORTHO05D003769 5.1e-35 151.8 94 76.6
PSO764G0236 Papaver somniferum HOM05D003197 ORTHO05D003769 5.1e-35 151.8 94 76.6
Solyc09g075450.3 Solanum lycopersicum HOM05D003197 ORTHO05D003769 5.1e-35 151.8 82 87.8
Sopen09g030240 Solanum pennellii HOM05D003197 ORTHO05D003769 5.1e-35 151.8 82 87.8
TPR.G33977 Trifolium pratense HOM05D003197 ORTHO05D003769 5.1e-35 151.8 94 77.7
BraA01t04618Z Brassica rapa HOM05D003197 ORTHO05D003769 6.6e-35 151.4 82 93.9
Rhsim06G0161500 Rhododendron simsii HOM05D003197 ORTHO05D003769 6.6e-35 151.4 94 77.7
RcHm_v2.0_Chr6g0294511 Rosa chinensis HOM05D003197 ORTHO05D003769 6.6e-35 151.4 94 76.6
Eucgr.H01081 Eucalyptus grandis HOM05D003197 ORTHO05D003769 8.7e-35 151.0 94 77.7
MD03G1292300 Malus domestica HOM05D003197 ORTHO05D003769 1.1e-34 150.6 94 77.7
VMungo0720G0285 Vigna mungo HOM05D003197 ORTHO05D003769 1.1e-34 150.6 94 76.6
Phvul.007G217700 Phaseolus vulgaris HOM05D003197 ORTHO05D003769 1.5e-34 150.2 94 77.7
FAN27G3019 Fragaria x ananassa HOM05D003197 ORTHO05D003769 2.5e-34 149.4 82 87.8
Nn4g25715 Nelumbo nucifera HOM05D003197 ORTHO05D003769 4.3e-34 148.7 94 76.6
Os03g0337900 Oryza sativa ssp. japonica HOM05D003197 ORTHO05D003769 9.6e-34 147.5 94 75.5
Zm00001eb016240 Zea mays HOM05D003197 ORTHO05D003769 2.8e-33 146.0 94 73.4
CSS0028216 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 8.1e-33 144.4 101 71.3
Eucgr.H01083 Eucalyptus grandis HOM05D003197 ORTHO05D003769 2.4e-32 142.9 94 72.3
Carub.0008s1097 Capsella rubella HOM05D003197 ORTHO05D003769 2.6e-31 139.4 82 84.1
Glyma.05G065550 Glycine max HOM05D003197 ORTHO05D003769 4.5e-31 138.7 88 75.0
AagrBONN_evm.TU.Sc2ySwM_228.3677 Anthoceros agrestis HOM05D003197 ORTHO05D003769 1.1e-29 134.0 94 67.0
PRCOL_00002149 Prasinoderma coloniale HOM05D003197 ORTHO05D003769 1.4e-29 133.7 82 73.2
CBR_g26174 Chara braunii HOM05D003197 ORTHO05D003769 9.3e-29 131.0 82 75.6
SMO197G0092 Selaginella moellendorffii HOM05D003197 ORTHO05D003769 2.3e-27 126.3 94 64.9
EL10Ac6g15230 Beta vulgaris HOM05D003197 ORTHO05D003769 8.7e-27 124.4 65 89.2
Mapoly0045s0064 Marchantia polymorpha HOM05D003197 ORTHO05D003769 1.1e-26 124.0 82 69.5
Pp3c23_19500 Physcomitrium patens HOM05D003197 ORTHO05D003769 1.5e-26 123.6 94 62.8
Actinidia21430 Actinidia chinensis HOM05D003197 ORTHO05D003769 1.9e-26 123.2 67 86.6
Solyc06g009840.3 Solanum lycopersicum HOM05D003197 ORTHO05D003769 2.5e-26 122.9 67 86.6
Pp3c20_7140 Physcomitrium patens HOM05D003197 ORTHO05D003769 9.6e-26 120.9 94 60.6
Haze_27469 Corylus avellana HOM05D003197 ORTHO05D003769 4.8e-25 118.6 82 70.7
AagrBONN_evm.TU.Sc2ySwM_344.987 Anthoceros agrestis HOM05D003197 ORTHO05D003769 8.1e-25 117.9 82 68.3
QL02p103821 Quercus lobata HOM05D003197 ORTHO05D003769 2.4e-24 116.3 77 72.7
SEGI_34724 Sequoiadendron giganteum HOM05D003197 ORTHO05D003769 2.2e-22 109.8 78 66.7
BolC4t21675H Brassica oleracea HOM05D003197 ORTHO05D003769 3.8e-22 109.0 94 63.8
Cfa027230 Carpinus fangiana HOM05D003197 ORTHO05D003769 2.5e-21 106.3 82 62.2
Rhsim06G0161700 Rhododendron simsii HOM05D003197 ORTHO05D003769 2.5e-21 106.3 54 92.6
AUR62025515 Chenopodium quinoa HOM05D003197 ORTHO05D003769 4.2e-21 105.5 54 90.7
Cre01.g020223 Chlamydomonas reinhardtii HOM05D003197 ORTHO05D003769 4.2e-21 105.5 78 65.4
A05p28560 Brassica napus HOM05D002166 ORTHO05D002634 9.3e-21 104.4 47 97.9
Duzib211G0223 Durio zibethinus HOM05D003197 ORTHO05D003769 1.6e-20 103.6 51 94.1
MCO15G383 Micromonas commoda HOM05D003197 ORTHO05D003769 2.1e-20 103.2 81 64.2
Prupe.8G265300 Prunus persica HOM05D003197 ORTHO05D003769 1.0e-19 100.9 79 67.1
BraA05t21734Z Brassica rapa HOM05D002166 ORTHO05D002634 1.3e-19 100.5 48 95.8
PRCOL_00000918 Prasinoderma coloniale HOM05D003197 ORTHO05D003769 3.9e-19 99.0 82 61.0
BcaC05g28321 Brassica carinata HOM05D002166 ORTHO05D002634 1.9e-18 96.7 47 91.5
C05p43980 Brassica napus HOM05D002166 ORTHO05D002634 1.9e-18 96.7 47 91.5
BolC5t33116H Brassica oleracea HOM05D002166 ORTHO05D002634 1.9e-18 96.7 47 91.5
Nitab4.5_0000448g0140 Nicotiana tabacum HOM05D000768 ORTHO05D003769 5.3e-16 88.6 47 85.1
BcaB06g26100 Brassica carinata HOM05D002166 ORTHO05D002634 7.6e-15 84.7 49 89.8
CiPaw.08G092800 Carya illinoinensis HOM05D003197 ORTHO05D003769 7.6e-15 84.7 82 58.5
Sp3g18380 Schrenkiella parvula HOM05D002166 ORTHO05D002634 5.5e-13 78.6 59 72.9
FAN20G1625 Fragaria x ananassa HOM05D003197 ORTHO05D003769 1.1e-08 64.3 52 59.6
Dinv24406 Davidia involucrata HOM05D003197 ORTHO05D003769 4.1e-08 62.4 42 71.4
Carub.0003s2030 Capsella rubella HOM05D002166 ORTHO05D002634 6.9e-08 61.6 44 65.9
Glyma.11G155200 Glycine max HOM05D003197 ORTHO05D003769 9.0e-08 61.2 44 65.9
vmacro09123 Vaccinium macrocarpon HOM05D003103 ORTHO05D003999 2.2e-06 56.6 34 70.6
vmacro22986 Vaccinium macrocarpon HOM05D003103 ORTHO05D003999 2.2e-06 56.6 34 70.6
Atru.chr5.1084 Acer truncatum HOM05D003197 ORTHO05D003769 3.8e-06 55.8 38 65.8


User provided reference genes

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