Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g47716 Brassica carinata HOM05D003197 ORTHO05D003769 1.1e-110 403.3 205 100.0
BcaC02g06979 Brassica carinata HOM05D003197 ORTHO05D003769 5.8e-91 337.8 195 90.3
A04p34960 Brassica napus HOM05D003197 ORTHO05D003769 5.8e-91 337.8 195 90.3
C04p72860 Brassica napus HOM05D003197 ORTHO05D003769 5.8e-91 337.8 195 90.3
BolC4t28767H Brassica oleracea HOM05D003197 ORTHO05D003769 5.8e-91 337.8 195 90.3
Thhalv10001422m.g Eutrema salsugineum HOM05D003197 ORTHO05D003769 7.6e-91 337.4 195 89.7
AT2G47510 Arabidopsis thaliana HOM05D003197 ORTHO05D003769 9.9e-91 337.0 195 89.2
BcaC02g12803 Brassica carinata HOM05D003197 ORTHO05D003769 9.9e-91 337.0 195 89.2
A05p00410 Brassica napus HOM05D003197 ORTHO05D003769 9.9e-91 337.0 195 89.2
C04p00340 Brassica napus HOM05D003197 ORTHO05D003769 9.9e-91 337.0 195 89.2
C04p00370 Brassica napus HOM05D003197 ORTHO05D000780 9.9e-91 337.0 195 89.2
BolC4t21676H Brassica oleracea HOM05D003197 ORTHO05D003769 9.9e-91 337.0 195 89.2
Carub.0004s3025 Capsella rubella HOM05D003197 ORTHO05D003769 9.9e-91 337.0 195 89.2
Aa31LG1G28820 Aethionema arabicum HOM05D003197 ORTHO05D003769 1.3e-90 336.7 195 89.7
BcaB02g08764 Brassica carinata HOM05D003197 ORTHO05D003769 2.2e-90 335.9 195 88.7
BcaB06g29441 Brassica carinata HOM05D003197 ORTHO05D003769 2.2e-90 335.9 195 88.7
Sp4g29450 Schrenkiella parvula HOM05D003197 ORTHO05D003769 2.9e-90 335.5 195 89.2
AL4G47080 Arabidopsis lyrata HOM05D003197 ORTHO05D003769 3.8e-90 335.1 195 88.7
BcaC09g47717 Brassica carinata HOM05D003197 ORTHO05D003769 3.8e-90 335.1 195 89.2
AT5G50950 Arabidopsis thaliana HOM05D003197 ORTHO05D003769 4.9e-90 334.7 195 88.7
BolC4t21682H Brassica oleracea HOM05D003197 ORTHO05D000780 4.9e-90 334.7 197 86.8
Carub.0008s1096 Capsella rubella HOM05D003197 ORTHO05D003769 2.4e-89 332.4 195 87.7
CARHR142910 Cardamine hirsuta HOM05D003197 ORTHO05D003769 5.4e-89 331.3 195 87.7
THA.LOC104802185 Tarenaya hassleriana HOM05D003197 ORTHO05D003769 7.1e-89 330.9 195 86.7
AL8G25140 Arabidopsis lyrata HOM05D003197 ORTHO05D003769 1.6e-88 329.7 195 87.2
CARHR257280 Cardamine hirsuta HOM05D003197 ORTHO05D003769 2.7e-88 328.9 195 87.2
Oeu008339.1 Olea europaea HOM05D003197 ORTHO05D003769 5.6e-86 321.2 195 84.1
Potri.002G201300 Populus trichocarpa HOM05D003197 ORTHO05D003769 5.6e-86 321.2 195 84.1
COL.COLO4_23299 Corchorus olitorius HOM05D003197 ORTHO05D003769 9.6e-86 320.5 195 83.6
CsaV3_4G001010 Cucumis sativus L. HOM05D003197 ORTHO05D003769 1.3e-85 320.1 195 83.6
FvH4_2g26140 Fragaria vesca HOM05D003197 ORTHO05D003769 1.3e-85 320.1 195 83.6
Nitab4.5_0009662g0010 Nicotiana tabacum HOM05D003197 ORTHO05D003769 1.3e-85 320.1 195 82.1
Rhsim07G0104500 Rhododendron simsii HOM05D003197 ORTHO05D003769 1.3e-85 320.1 195 84.1
RcHm_v2.0_Chr6g0294521 Rosa chinensis HOM05D003197 ORTHO05D003769 1.3e-85 320.1 195 83.6
CAN.G1280.13 Capsicum annuum HOM05D003197 ORTHO05D003769 2.1e-85 319.3 195 83.1
Peaxi162Scf00001g00341 Petunia axillaris HOM05D003197 ORTHO05D003769 2.1e-85 319.3 197 82.2
Peaxi162Scf00362g01196 Petunia axillaris HOM05D003197 ORTHO05D003769 2.1e-85 319.3 195 83.1
QL12p027709 Quercus lobata HOM05D003197 ORTHO05D003769 2.1e-85 319.3 195 83.6
Sabra02G0157600 Salix brachista HOM05D003197 ORTHO05D003769 2.1e-85 319.3 195 83.1
MELO3C017938.2 Cucumis melo HOM05D003197 ORTHO05D003769 2.8e-85 318.9 195 83.1
Dinv33079 Davidia involucrata HOM05D003197 ORTHO05D003769 2.8e-85 318.9 195 83.6
Gohir.A07G126400 Gossypium hirsutum HOM05D003197 ORTHO05D003769 2.8e-85 318.9 195 82.6
Gohir.D07G130500 Gossypium hirsutum HOM05D003197 ORTHO05D003769 2.8e-85 318.9 195 82.6
Gorai.001G141300 Gossypium raimondii HOM05D003197 ORTHO05D003769 2.8e-85 318.9 195 82.6
Nitab4.5_0000116g0300 Nicotiana tabacum HOM05D003197 ORTHO05D003769 2.8e-85 318.9 195 82.1
Cc01_g21120 Coffea canephora HOM05D003197 ORTHO05D003769 3.6e-85 318.5 195 82.6
SGA_v2.0_scaffold334G49028 Striga asiatica HOM05D003197 ORTHO05D003769 3.6e-85 318.5 195 84.1
Ah.08g213570 Amaranthus hybridus HOM05D003197 ORTHO05D003769 4.8e-85 318.2 195 83.6
CSS0002671 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 4.8e-85 318.2 195 83.6
CSS0038182 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 4.8e-85 318.2 195 83.6
Manes.03G058700 Manihot esculenta HOM05D003197 ORTHO05D003769 4.8e-85 318.2 195 84.1
Psat6g163680 Pisum sativum HOM05D003197 ORTHO05D003769 4.8e-85 318.2 195 83.1
Sed0011546 Sechium edule HOM05D003197 ORTHO05D003769 4.8e-85 318.2 195 83.6
FAN24G1606 Fragaria x ananassa HOM05D003197 ORTHO05D003769 6.2e-85 317.8 197 82.2
Lalb_Chr21g0309351 Lupinus albus HOM05D003197 ORTHO05D003769 6.2e-85 317.8 195 83.1
ClCG10G011140 Citrullus lanatus HOM05D003197 ORTHO05D003769 8.1e-85 317.4 195 83.1
Manes.05G000300 Manihot esculenta HOM05D003197 ORTHO05D003769 8.1e-85 317.4 195 83.1
Nitab4.5_0007413g0010 Nicotiana tabacum HOM05D003197 ORTHO05D003769 8.1e-85 317.4 195 81.5
SalBow6G6079 Salvia bowleyana HOM05D003197 ORTHO05D003769 8.1e-85 317.4 195 83.1
SGA_v2.0_scaffold2G01379 Striga asiatica HOM05D003197 ORTHO05D003769 8.1e-85 317.4 195 83.6
Thecc.01G306500 Theobroma cacao HOM05D003197 ORTHO05D003769 8.1e-85 317.4 195 83.1
unitig_22.g5232 Utricularia gibba HOM05D003197 ORTHO05D003769 8.1e-85 317.4 195 83.1
VMungo0720G1283 Vigna mungo HOM05D003197 ORTHO05D003769 8.1e-85 317.4 195 83.6
AUR62008718 Chenopodium quinoa HOM05D003197 ORTHO05D003769 1.1e-84 317.0 195 83.1
Glyma.02G015700 Glycine max HOM05D003197 ORTHO05D003769 1.1e-84 317.0 195 83.6
Glyma.10G016200 Glycine max HOM05D003197 ORTHO05D003769 1.1e-84 317.0 195 83.6
MD00G1140200 Malus domestica HOM05D003197 ORTHO05D003769 1.1e-84 317.0 195 83.1
Cfa005865 Carpinus fangiana HOM05D003197 ORTHO05D003769 1.4e-84 316.6 195 82.6
Gorai.004G051500 Gossypium raimondii HOM05D003197 ORTHO05D003769 1.4e-84 316.6 195 83.1
Sc05g0003520 Simmondsia chinensis HOM05D003197 ORTHO05D003769 1.4e-84 316.6 195 82.1
arahy.Tifrunner.gnm1.ann1.5H6FCE Arachis hypogaea HOM05D003197 ORTHO05D003769 1.8e-84 316.2 195 83.1
Rhsim13G0008000 Rhododendron simsii HOM05D003197 ORTHO05D003769 1.8e-84 316.2 199 82.9
TWI59G0305 Tripterygium wilfordii HOM05D003197 ORTHO05D003769 1.8e-84 316.2 195 82.6
HPP92_013736 Vanilla planifolia HOM05D003197 ORTHO05D003769 1.8e-84 316.2 195 83.1
arahy.Tifrunner.gnm1.ann1.BU45MS Arachis hypogaea HOM05D003197 ORTHO05D003769 2.4e-84 315.8 195 82.6
Phvul.007G217600 Phaseolus vulgaris HOM05D003197 ORTHO05D003769 2.4e-84 315.8 195 83.1
MSTRG.18133 Avicennia marina HOM05D003197 ORTHO05D003769 3.1e-84 315.5 195 82.1
Duzib138G1374 Durio zibethinus HOM05D003197 ORTHO05D003769 3.1e-84 315.5 195 82.6
Cpa.g.sc151.34 Carica papaya HOM05D003197 ORTHO05D003769 4.0e-84 315.1 195 82.1
Gohir.A08G041500 Gossypium hirsutum HOM05D003197 ORTHO05D003769 4.0e-84 315.1 195 82.6
Ca_10314_v3 Cicer arietinum L. HOM05D003197 ORTHO05D003769 5.3e-84 314.7 195 82.6
Ciclev10019838m.g Citrus clementina HOM05D003197 ORTHO05D003769 5.3e-84 314.7 195 81.5
HanXRQChr04g0114721 Helianthus annuus HOM05D003197 ORTHO05D003769 5.3e-84 314.7 195 82.6
Lsat_1_v5_gn_8_164740 Lactuca sativa HOM05D003197 ORTHO05D003769 5.3e-84 314.7 195 82.6
Lj5g0001576 Lotus japonicus HOM05D003197 ORTHO05D003769 5.3e-84 314.7 195 81.5
Gohir.D08G051600 Gossypium hirsutum HOM05D003197 ORTHO05D003769 6.9e-84 314.3 195 82.6
TWI23G1200 Tripterygium wilfordii HOM05D003197 ORTHO05D003769 6.9e-84 314.3 195 82.1
CAN.G862.60 Capsicum annuum HOM05D003197 ORTHO05D003769 9.0e-84 313.9 195 82.1
CiPaw.07G112700 Carya illinoinensis HOM05D003197 ORTHO05D003769 9.0e-84 313.9 195 82.6
Glyma.02G015800 Glycine max HOM05D003197 ORTHO05D003769 9.0e-84 313.9 195 81.5
GSVIVG01028056001 Vitis vinifera HOM05D003197 ORTHO05D003769 9.0e-84 313.9 195 82.6
MD03G1292300 Malus domestica HOM05D003197 ORTHO05D003769 1.2e-83 313.5 195 82.1
Hund12826 Selenicereus undatus HOM05D003197 ORTHO05D003769 1.2e-83 313.5 195 82.1
Haze_04982 Corylus avellana HOM05D003197 ORTHO05D003769 1.5e-83 313.2 195 82.1
Eucgr.H01081 Eucalyptus grandis HOM05D003197 ORTHO05D003769 1.5e-83 313.2 195 81.5
Manes.01G223200 Manihot esculenta HOM05D003197 ORTHO05D003769 1.5e-83 313.2 195 82.6
Rhsim06G0161500 Rhododendron simsii HOM05D003197 ORTHO05D003769 2.0e-83 312.8 193 83.4
ATR0796G113 Amborella trichopoda HOM05D003197 ORTHO05D003769 2.6e-83 312.4 195 81.5
ECA236G1793 Erigeron canadensis HOM05D003197 ORTHO05D003769 2.6e-83 312.4 195 82.1
FAN27G3019 Fragaria x ananassa HOM05D003197 ORTHO05D003769 2.6e-83 312.4 197 81.2
Migut.D00123 Erythranthe guttata HOM05D003197 ORTHO05D003769 3.4e-83 312.0 195 81.5
FvH4_2g26121 Fragaria vesca HOM05D003197 ORTHO05D003769 3.4e-83 312.0 195 81.5
Nn3g21574 Nelumbo nucifera HOM05D003197 ORTHO05D003769 3.4e-83 312.0 195 81.5
Hund05454 Selenicereus undatus HOM05D003197 ORTHO05D003769 3.4e-83 312.0 195 81.5
TAR636G2764 Trochodendron aralioides HOM05D003197 ORTHO05D003769 3.4e-83 312.0 195 81.5
Aqoxy2G02869 Aquilegia oxysepala HOM05D003197 ORTHO05D003769 4.5e-83 311.6 195 81.0
TAR365G0397 Trochodendron aralioides HOM05D003197 ORTHO05D003769 4.5e-83 311.6 195 82.1
Atru.chr6.1651 Acer truncatum HOM05D003197 ORTHO05D003769 5.8e-83 311.2 195 80.0
HanXRQChr06g0167721 Helianthus annuus HOM05D003197 ORTHO05D003769 5.8e-83 311.2 195 81.5
PSO731G0008 Papaver somniferum HOM05D003197 ORTHO05D003769 5.8e-83 311.2 195 80.5
PSO764G0236 Papaver somniferum HOM05D003197 ORTHO05D003769 5.8e-83 311.2 195 80.5
Solyc09g075450.3 Solanum lycopersicum HOM05D003197 ORTHO05D003769 5.8e-83 311.2 195 81.5
Sopen09g030240 Solanum pennellii HOM05D003197 ORTHO05D003769 5.8e-83 311.2 195 81.5
Hma1.2p1_0494F.1_g165490 Hydrangea macrophylla HOM05D003197 ORTHO05D003769 7.6e-83 310.8 195 81.0
Lalb_Chr02g0146531 Lupinus albus HOM05D003197 ORTHO05D003769 9.9e-83 310.5 195 81.5
Lj5A370G55 Lonicera japonica HOM05D003197 ORTHO05D003769 1.3e-82 310.1 195 81.0
PGR119G1313 Punica granatum HOM05D003197 ORTHO05D003769 1.3e-82 310.1 195 81.0
VMungo0720G0285 Vigna mungo HOM05D003197 ORTHO05D003769 1.3e-82 310.1 195 81.0
Nitab4.5_0000803g0020 Nicotiana tabacum HOM05D003197 ORTHO05D003769 1.7e-82 309.7 195 80.0
RcHm_v2.0_Chr6g0294511 Rosa chinensis HOM05D003197 ORTHO05D003769 1.7e-82 309.7 195 81.0
CANSAT80G1297 Cannabis sativa HOM05D003197 ORTHO05D003769 2.2e-82 309.3 195 79.5
TPR.G33977 Trifolium pratense HOM05D003197 ORTHO05D003769 2.9e-82 308.9 195 80.5
CDE12G0403 Ceratophyllum demersum HOM05D003197 ORTHO05D003769 3.8e-82 308.5 195 79.0
Nn4g25715 Nelumbo nucifera HOM05D003197 ORTHO05D003769 4.9e-82 308.1 195 81.0
Phvul.007G217700 Phaseolus vulgaris HOM05D003197 ORTHO05D003769 6.4e-82 307.8 195 81.0
Medtr1g087900 Medicago truncatula HOM05D003197 ORTHO05D003769 1.4e-81 306.6 195 80.0
Eucgr.H01083 Eucalyptus grandis HOM05D003197 ORTHO05D003769 1.6e-80 303.1 195 78.5
GSVIVG01031185001 Vitis vinifera HOM05D003197 ORTHO05D003769 1.6e-80 303.1 195 78.5
Os03g0337900 Oryza sativa ssp. japonica HOM05D003197 ORTHO05D003769 3.5e-80 302.0 195 79.0
Zm00001eb016240 Zea mays HOM05D003197 ORTHO05D003769 3.5e-80 302.0 195 78.5
BNapus_Darmor_BZH_scaffold_99p00260 Brassica napus HOM05D003197 ORTHO05D003769 6.7e-79 297.7 195 82.6
BraA01t04618Z Brassica rapa HOM05D003197 ORTHO05D003769 1.6e-77 293.1 195 82.1
CBR_g26174 Chara braunii HOM05D003197 ORTHO05D003769 1.2e-75 287.0 195 74.4
AagrBONN_evm.TU.Sc2ySwM_228.3677 Anthoceros agrestis HOM05D003197 ORTHO05D003769 4.5e-75 285.0 195 73.8
EL10Ac6g15230 Beta vulgaris HOM05D003197 ORTHO05D003769 5.8e-75 284.6 178 82.0
Carub.0008s1097 Capsella rubella HOM05D003197 ORTHO05D003769 8.4e-74 280.8 202 74.8
PRCOL_00002149 Prasinoderma coloniale HOM05D003197 ORTHO05D003769 3.0e-71 272.3 195 69.7
SMO197G0092 Selaginella moellendorffii HOM05D003197 ORTHO05D003769 8.7e-71 270.8 195 72.8
Pp3c23_19500 Physcomitrium patens HOM05D003197 ORTHO05D003769 3.3e-70 268.9 193 72.0
AUR62025515 Chenopodium quinoa HOM05D003197 ORTHO05D003769 1.3e-69 266.9 167 82.0
Pp3c20_7140 Physcomitrium patens HOM05D003197 ORTHO05D003769 1.6e-69 266.5 193 71.0
Duzib211G0223 Durio zibethinus HOM05D003197 ORTHO05D003769 3.7e-69 265.4 164 82.9
Prupe.8G265300 Prunus persica HOM05D003197 ORTHO05D003769 6.2e-69 264.6 192 74.0
Rhsim06G0161700 Rhododendron simsii HOM05D003197 ORTHO05D003769 3.1e-68 262.3 171 81.3
Mapoly0045s0064 Marchantia polymorpha HOM05D003197 ORTHO05D003769 4.9e-66 255.0 195 67.2
Haze_27469 Corylus avellana HOM05D003197 ORTHO05D003769 1.0e-63 247.3 195 66.2
AagrBONN_evm.TU.Sc2ySwM_344.987 Anthoceros agrestis HOM05D003197 ORTHO05D003769 2.5e-62 242.7 159 74.8
Gorai.004G132900 Gossypium raimondii HOM05D003197 ORTHO05D003769 3.7e-61 238.8 138 81.9
Cfa027230 Carpinus fangiana HOM05D003197 ORTHO05D003769 1.1e-60 237.3 195 65.1
Cre01.g020223 Chlamydomonas reinhardtii HOM05D003197 ORTHO05D003769 1.8e-60 236.5 191 64.4
CiPaw.08G092800 Carya illinoinensis HOM05D003197 ORTHO05D003769 5.0e-58 228.4 192 66.7
Gohir.D13G125000 Gossypium hirsutum HOM05D003197 ORTHO05D003769 9.3e-57 224.2 116 90.5
Gorai.013G139800 Gossypium raimondii HOM05D003197 ORTHO05D003769 3.0e-55 219.2 116 88.8
MCO15G383 Micromonas commoda HOM05D003197 ORTHO05D003769 3.3e-54 215.7 194 60.8
PRCOL_00000918 Prasinoderma coloniale HOM05D003197 ORTHO05D003769 1.1e-52 210.7 195 59.0
Solyc06g009830.3 Solanum lycopersicum HOM05D003197 ORTHO05D003769 7.7e-51 204.5 131 80.9
CSS0028216 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 2.9e-50 202.6 201 58.7
Cpa.g.sc27.118 Carica papaya HOM05D003197 ORTHO05D003769 3.8e-50 202.2 195 57.4
CDE01G0127 Ceratophyllum demersum HOM05D003197 ORTHO05D003769 4.2e-49 198.7 130 78.5
BcaC09g47718 Brassica carinata HOM05D003197 ORTHO05D003769 1.0e-39 167.5 87 96.6
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 6.7e-39 164.9 113 77.0
Dinv10044 Davidia involucrata HOM05D003197 ORTHO05D003769 1.1e-36 157.5 84 89.3
Haze_27310 Corylus avellana HOM05D003197 ORTHO05D003769 5.3e-36 155.2 131 65.6
BolC4t21675H Brassica oleracea HOM05D003197 ORTHO05D003769 4.7e-32 142.1 195 49.2
Glyma.05G065550 Glycine max HOM05D003197 ORTHO05D003769 1.5e-30 137.1 76 84.2
Actinidia21430 Actinidia chinensis HOM05D003197 ORTHO05D003769 1.7e-26 123.6 67 86.6
Solyc06g009840.3 Solanum lycopersicum HOM05D003197 ORTHO05D003769 2.2e-26 123.2 67 86.6
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 3.8e-26 122.5 94 72.3
Atru.chr5.1084 Acer truncatum HOM05D003197 ORTHO05D003769 4.2e-25 119.0 166 47.6
MCO04G254 Micromonas commoda HOM05D003197 ORTHO05D003769 7.2e-25 118.2 190 35.3
QL02p103821 Quercus lobata HOM05D003197 ORTHO05D003769 2.7e-24 116.3 70 78.6
SEGI_34724 Sequoiadendron giganteum HOM05D003197 ORTHO05D003769 3.4e-22 109.4 66 77.3
Lj5g0011705 Lotus japonicus HOM05D003197 ORTHO05D001516 3.2e-17 92.8 93 51.6
Nitab4.5_0000448g0140 Nicotiana tabacum HOM05D000768 ORTHO05D003769 6.1e-16 88.6 47 85.1
Sabra14G0093600 Salix brachista HOM05D003197 ORTHO05D003769 4.4e-14 82.4 43 88.4
C04p00320 Brassica napus HOM05D003197 ORTHO05D003769 4.9e-13 79.0 66 68.2
BcaC02g12804 Brassica carinata HOM05D003197 ORTHO05D021860 3.5e-11 72.8 63 66.7
FAN20G1625 Fragaria x ananassa HOM05D003197 ORTHO05D003769 3.6e-08 62.8 40 72.5
Dinv24406 Davidia involucrata HOM05D003197 ORTHO05D003769 4.7e-08 62.4 42 71.4
Glyma.11G155200 Glycine max HOM05D003197 ORTHO05D003769 1.0e-07 61.2 44 65.9
vmacro09123 Vaccinium macrocarpon HOM05D003103 ORTHO05D003999 3.4e-06 56.2 34 70.6
vmacro22986 Vaccinium macrocarpon HOM05D003103 ORTHO05D003999 3.4e-06 56.2 34 70.6


User provided reference genes

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