Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 9.5e-150 533.5 271 100.0
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 4.6e-136 488.0 270 91.5
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 1.3e-135 486.5 268 91.4
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 3.0e-135 485.3 270 91.1
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 3.0e-135 485.3 270 91.1
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 1.6e-133 479.6 268 90.7
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 9.9e-131 470.3 255 92.5
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 1.9e-126 456.1 270 84.8
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 2.1e-125 452.6 254 89.0
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 9.3e-121 437.2 276 81.5
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 2.8e-109 399.1 255 78.4
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 2.0e-91 339.7 253 63.6
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 6.7e-87 324.7 251 61.8
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 7.4e-86 321.2 254 61.4
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 3.7e-85 318.9 253 61.7
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.4e-84 317.0 262 61.1
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 1.5e-83 313.5 253 59.7
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 2.5e-81 306.2 253 60.5
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 4.2e-81 305.4 262 58.8
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 2.1e-80 303.1 254 59.1
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 1.0e-79 300.8 262 57.3
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 1.0e-79 300.8 253 62.1
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 2.6e-78 296.2 254 59.4
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 3.3e-78 295.8 261 57.1
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 8.2e-77 291.2 253 57.3
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 1.1e-76 290.8 253 56.9
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.6e-75 287.0 253 56.1
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 1.7e-74 283.5 261 57.1
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 8.5e-74 281.2 253 55.3
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.5e-73 280.4 253 54.9
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 2.5e-73 279.6 253 58.9
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 6.1e-72 275.0 175 82.3
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 8.0e-72 274.6 267 52.8
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 8.0e-72 274.6 253 56.5
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 1.0e-71 274.2 253 58.1
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 1.0e-71 274.2 284 51.4
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.4e-71 273.9 253 54.9
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 1.8e-71 273.5 264 55.3
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 1.8e-71 273.5 297 50.8
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 3.0e-71 272.7 261 55.2
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 8.8e-71 271.2 261 54.4
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 1.2e-70 270.8 253 55.3
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 1.2e-70 270.8 261 55.2
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 1.5e-70 270.4 249 56.6
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 4.4e-70 268.9 261 54.8
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 7.5e-70 268.1 261 55.2
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 1.7e-69 266.9 248 63.7
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 1.7e-69 266.9 260 53.5
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 2.2e-69 266.5 283 50.5
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 2.2e-69 266.5 262 53.8
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 2.2e-69 266.5 254 55.1
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 2.2e-69 266.5 261 52.5
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 2.8e-69 266.2 252 53.6
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 3.7e-69 265.8 249 56.6
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 6.3e-69 265.0 249 55.8
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 1.1e-68 264.2 262 53.4
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 1.4e-68 263.8 283 50.2
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 7.0e-68 261.5 249 55.4
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 1.2e-67 260.8 249 54.6
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 3.5e-67 259.2 251 54.2
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 1.5e-65 253.8 250 51.2
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 1.9e-65 253.4 253 51.4
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 2.1e-64 250.0 248 54.0
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 8.0e-64 248.1 231 55.4
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 8.8e-63 244.6 253 51.4
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 8.8e-63 244.6 253 51.4
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 1.5e-62 243.8 139 90.6
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 3.4e-62 242.7 256 47.7
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 7.5e-62 241.5 247 51.4
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 4.8e-61 238.8 245 50.6
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 5.9e-59 231.9 261 47.1
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 2.3e-58 229.9 232 51.7
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 2.9e-58 229.6 119 94.1
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 5.5e-57 225.3 285 46.0
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 9.5e-57 224.6 253 42.7
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 3.6e-56 222.6 286 43.4
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 2.2e-53 213.4 264 44.3
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 2.8e-53 213.0 244 47.1
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 8.3e-53 211.5 250 48.4
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 4.1e-52 209.1 250 44.0
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 2.7e-51 206.5 264 44.7
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 1.9e-49 200.3 266 44.4
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 8.0e-48 194.9 258 44.6
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 4.0e-47 192.6 253 43.1
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 6.8e-47 191.8 245 42.9
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 3.7e-45 186.0 261 43.3
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 7.0e-44 181.8 249 42.6
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 3.0e-42 176.4 269 40.9
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.5e-38 164.1 166 53.6
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 2.6e-38 163.3 254 39.4
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 6.4e-37 158.7 102 79.4
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 2.4e-36 156.8 79 97.5
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 4.1e-36 156.0 154 53.2
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 2.1e-35 153.7 144 54.2
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 2.1e-35 153.7 144 54.2
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 6.0e-35 152.1 267 38.6
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 1.3e-34 151.0 282 33.7
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 8.6e-34 148.3 224 41.1
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 1.8e-31 140.6 269 35.3
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 1.7e-29 134.0 255 31.4
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 2.4e-28 130.2 247 32.8
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 4.3e-25 119.4 118 46.6
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 3.4e-22 109.8 85 64.7
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 2.4e-20 103.6 94 54.3
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 2.4e-20 103.6 94 54.3
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 4.6e-19 99.4 79 60.8
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 1.1e-17 94.7 98 52.0
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 3.1e-15 86.7 85 48.2
vmacro21815 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 3.8e-13 79.7 87 48.3
CAN.G772.6 Capsicum annuum HOM05D005833 ORTHO05D008135 7.3e-09 65.5 65 46.2
PGR031G2661 Punica granatum HOM05D002453 ORTHO05D008746 2.8e-08 63.5 92 39.1
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 3.1e-07 60.1 143 23.1
CDE04G0987 Ceratophyllum demersum HOM05D000001 ORTHO05D009429 4.0e-07 59.7 137 24.8
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 4.0e-07 59.7 143 25.2
Cc07_g18980 Coffea canephora HOM05D000162 ORTHO05D000090 5.3e-07 59.3 88 36.4
Atru.BG.218.p Acer truncatum HOM05D000855 ORTHO05D008530 6.9e-07 58.9 143 25.2
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 9.0e-07 58.5 143 23.8
Haze_20657 Corylus avellana HOM05D000855 ORTHO05D008530 1.2e-06 58.2 143 25.2
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 1.5e-06 57.8 149 26.2
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 1.5e-06 57.8 149 25.5
Cc07_g19010 Coffea canephora HOM05D000162 ORTHO05D000090 2.0e-06 57.4 83 36.1
DCAR_003849 Daucus carota HOM05D000855 ORTHO05D008530 2.0e-06 57.4 157 26.1
DCAR_009287 Daucus carota HOM05D000855 ORTHO05D008530 2.0e-06 57.4 157 26.1
Cfa017505 Carpinus fangiana HOM05D000855 ORTHO05D008530 2.6e-06 57.0 149 25.5
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 2.6e-06 57.0 143 23.1
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 2.6e-06 57.0 164 23.2
FvH4_6g15290 Fragaria vesca HOM05D000855 ORTHO05D008530 4.5e-06 56.2 149 24.8
FAN09G2418 Fragaria x ananassa HOM05D000855 ORTHO05D008530 4.5e-06 56.2 149 24.8
FAN14G2211 Fragaria x ananassa HOM05D000855 ORTHO05D008530 4.5e-06 56.2 149 24.8
Lsat_1_v5_gn_3_111640 Lactuca sativa HOM05D000162 ORTHO05D000090 4.5e-06 56.2 132 27.3
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 5.8e-06 55.8 143 23.8
Sc20g0004090 Simmondsia chinensis HOM05D000855 ORTHO05D008530 5.8e-06 55.8 164 24.4
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 5.8e-06 55.8 164 23.8
Actinidia04475 Actinidia chinensis HOM05D000162 ORTHO05D000090 7.6e-06 55.5 115 26.1
Migut.F00849 Erythranthe guttata HOM05D000162 ORTHO05D000090 7.6e-06 55.5 111 30.6
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 9.9e-06 55.1 143 22.4
Prupe.6G241600 Prunus persica HOM05D000855 ORTHO05D008530 9.9e-06 55.1 149 23.5
PGR142G0989 Punica granatum HOM05D000855 ORTHO05D008530 9.9e-06 55.1 143 24.5


User provided reference genes

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