Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 6.5e-88 327.4 170 100.0
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 5.3e-82 307.8 171 94.7
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 9.1e-82 307.0 171 94.7
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 1.2e-81 306.6 171 94.7
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 1.2e-81 306.6 171 94.7
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 2.6e-81 305.4 171 94.2
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 8.5e-72 273.9 172 83.7
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 4.2e-71 271.6 172 82.6
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 1.6e-70 269.6 171 85.4
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 3.6e-70 268.5 170 81.8
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 7.5e-68 260.8 172 82.0
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 5.4e-66 254.6 170 78.8
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 5.4e-66 254.6 170 78.8
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 7.0e-66 254.2 170 79.4
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 1.2e-65 253.4 170 79.4
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 1.2e-65 253.4 172 78.5
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 2.0e-65 252.7 170 78.2
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 2.0e-65 252.7 170 78.2
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 2.0e-65 252.7 170 78.2
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 2.0e-65 252.7 170 78.2
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 3.5e-65 251.9 171 78.9
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 4.5e-65 251.5 171 78.9
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 4.5e-65 251.5 171 78.9
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 5.9e-65 251.1 170 78.2
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 5.9e-65 251.1 170 78.2
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 5.9e-65 251.1 170 78.2
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 5.9e-65 251.1 170 77.6
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 1.0e-64 250.4 170 77.1
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 1.0e-64 250.4 170 77.1
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 1.3e-64 250.0 170 75.9
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 1.7e-64 249.6 170 77.6
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 5.0e-64 248.1 167 77.8
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 6.5e-64 247.7 170 75.9
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 6.5e-64 247.7 170 77.6
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 9.5e-63 243.8 170 74.1
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 2.1e-62 242.7 170 72.4
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 1.4e-61 240.0 168 75.6
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.4e-61 240.0 172 74.4
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 3.4e-60 235.3 170 73.5
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 3.7e-59 231.9 170 71.8
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 3.7e-59 231.9 174 72.4
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 7.7e-57 224.2 171 67.3
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 7.7e-57 224.2 171 70.2
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 1.0e-56 223.8 170 68.8
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 1.7e-56 223.0 170 68.8
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 2.3e-56 222.6 173 72.3
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 2.9e-56 222.2 170 68.2
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 3.8e-56 221.9 171 69.6
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 5.0e-56 221.5 170 68.2
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 6.6e-56 221.1 170 67.6
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 8.6e-56 220.7 170 66.5
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 1.9e-55 219.5 170 66.5
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 1.9e-55 219.5 170 68.2
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 2.5e-55 219.2 171 66.1
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 3.3e-55 218.8 170 65.9
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 4.3e-55 218.4 170 66.5
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 4.3e-55 218.4 169 68.0
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 5.6e-55 218.0 170 67.1
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 7.3e-55 217.6 170 65.9
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 7.3e-55 217.6 170 69.4
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 7.3e-55 217.6 170 68.2
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 1.2e-54 216.9 170 65.9
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 1.2e-54 216.9 170 65.9
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 2.1e-54 216.1 170 66.5
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 2.8e-54 215.7 171 64.9
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 2.8e-54 215.7 170 67.6
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 3.6e-54 215.3 170 65.9
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.6e-54 215.3 170 66.5
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 4.7e-54 214.9 170 65.9
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 4.7e-54 214.9 171 66.7
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 4.7e-54 214.9 170 65.3
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 4.7e-54 214.9 170 66.5
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 6.1e-54 214.5 170 65.3
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 8.0e-54 214.2 170 64.7
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 1.0e-53 213.8 170 63.5
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 1.0e-53 213.8 170 65.3
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 1.0e-53 213.8 170 66.5
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 1.4e-53 213.4 172 65.1
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 1.4e-53 213.4 170 67.1
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.4e-53 213.4 170 65.3
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 1.8e-53 213.0 170 64.7
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 1.8e-53 213.0 170 65.3
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.8e-53 213.0 170 64.1
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 2.3e-53 212.6 171 67.3
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 2.3e-53 212.6 170 63.5
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 3.0e-53 212.2 170 64.1
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 3.0e-53 212.2 170 65.3
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 5.2e-53 211.5 170 64.1
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 5.2e-53 211.5 171 65.5
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 5.2e-53 211.5 170 65.3
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 8.9e-53 210.7 171 64.3
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 1.2e-52 210.3 170 64.1
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 1.2e-52 210.3 170 66.5
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.2e-52 210.3 170 62.9
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 1.5e-52 209.9 170 64.7
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 3.4e-52 208.8 162 66.7
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 3.4e-52 208.8 170 61.8
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 5.7e-52 208.0 172 66.3
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 7.5e-52 207.6 172 62.2
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 7.5e-52 207.6 170 65.9
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 1.7e-51 206.5 170 64.1
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 1.7e-51 206.5 171 64.3
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 2.2e-51 206.1 170 60.6
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 2.9e-51 205.7 170 61.8
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 3.7e-51 205.3 174 64.4
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 3.7e-51 205.3 170 61.8
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 3.7e-51 205.3 170 62.9
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 6.4e-51 204.5 170 62.4
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 8.3e-51 204.1 171 63.2
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 1.8e-50 203.0 170 62.4
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 2.4e-50 202.6 172 61.0
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 3.2e-50 202.2 170 64.1
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 4.1e-50 201.8 171 63.7
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 7.0e-50 201.1 168 61.9
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.6e-49 199.9 173 64.7
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 1.6e-49 199.9 166 63.3
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 3.5e-49 198.7 167 62.3
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 5.9e-49 198.0 156 67.3
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 1.0e-48 197.2 170 61.2
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 1.0e-48 197.2 171 63.2
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 1.3e-48 196.8 166 60.8
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 1.7e-48 196.4 170 60.6
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 1.7e-48 196.4 166 60.2
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 3.0e-48 195.7 171 60.8
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 3.0e-48 195.7 164 68.3
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 1.5e-47 193.4 173 60.7
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 3.3e-47 192.2 171 62.6
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 9.5e-47 190.7 171 62.0
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 1.6e-46 189.9 170 58.8
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 2.1e-46 189.5 159 61.0
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 2.8e-46 189.1 162 59.3
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 8.0e-46 187.6 171 59.6
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 2.3e-45 186.0 172 59.9
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 8.9e-45 184.1 169 58.6
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 7.5e-44 181.0 171 57.3
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 7.5e-44 181.0 171 57.3
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 9.8e-44 180.6 149 66.4
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 1.1e-42 177.2 171 59.6
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 1.4e-42 176.8 171 56.1
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 4.1e-42 175.3 173 57.8
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 3.5e-41 172.2 102 77.5
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 5.0e-40 168.3 102 75.5
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 2.1e-38 162.9 153 60.1
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 1.8e-37 159.8 99 74.7
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 2.6e-36 156.0 100 71.0
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 4.4e-36 155.2 140 56.4
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 3.7e-35 152.1 148 56.8
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 7.3e-31 137.9 176 43.8
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 8.1e-30 134.4 171 42.7
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 1.1e-29 134.0 217 40.6
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.8e-29 133.3 172 44.8
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 3.1e-29 132.5 175 41.7
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 2.6e-28 129.4 144 50.0
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 9.9e-28 127.5 172 42.4
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 3.8e-27 125.6 136 49.3
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.2e-25 120.6 70 77.1
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 7.8e-25 117.9 116 51.7
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 5.1e-24 115.2 171 44.4
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 6.6e-24 114.8 70 72.9
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 9.6e-23 110.9 171 42.7
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 2.2e-19 99.8 172 42.4
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.2e-19 99.8 67 70.1
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 5.1e-16 88.6 67 62.7
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 1.4e-10 70.5 44 70.5


User provided reference genes

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