Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46195 Brassica carinata HOM05D007717 ORTHO05D009694 4.7e-70 267.7 132 100.0
BraA07t31055Z Brassica rapa HOM05D007717 ORTHO05D009694 2.1e-65 252.3 134 92.5
A07p34270 Brassica napus HOM05D007717 ORTHO05D009694 2.7e-65 251.9 134 91.8
C06p42310 Brassica napus HOM05D007717 ORTHO05D009694 6.0e-65 250.8 134 93.3
BolC6t39198H Brassica oleracea HOM05D007717 ORTHO05D009694 1.7e-64 249.2 134 91.8
Sp6g01810 Schrenkiella parvula HOM05D007717 ORTHO05D009694 9.0e-61 236.9 135 87.4
AT4G01935 Arabidopsis thaliana HOM05D007717 ORTHO05D009694 1.8e-56 222.6 134 82.1
Thhalv10028874m.g Eutrema salsugineum HOM05D007717 ORTHO05D009694 2.8e-54 215.3 133 78.9
Carub.0006s3530 Capsella rubella HOM05D007717 ORTHO05D009694 6.2e-54 214.2 134 77.6
BcaB04g18936 Brassica carinata HOM05D007717 ORTHO05D009694 8.7e-48 193.7 133 75.9
Aa31LG5G1580 Aethionema arabicum HOM05D007717 ORTHO05D009694 7.6e-44 180.6 129 72.1
THA.LOC104825934 Tarenaya hassleriana HOM05D007717 ORTHO05D009694 4.5e-36 154.8 120 65.8
Thecc.01G318800 Theobroma cacao HOM05D007717 ORTHO05D009694 3.2e-34 148.7 128 60.2
TWI14G0584 Tripterygium wilfordii HOM05D007717 ORTHO05D009694 7.2e-34 147.5 133 57.1
CARHR249750 Cardamine hirsuta HOM05D007717 ORTHO05D009694 1.6e-33 146.4 94 76.6
Haze_17022 Corylus avellana HOM05D007717 ORTHO05D009694 2.1e-33 146.0 118 60.2
Duzib138G0230 Durio zibethinus HOM05D007717 ORTHO05D009694 7.9e-33 144.1 111 64.0
Cpa.g.sc18.99 Carica papaya HOM05D007717 ORTHO05D009694 7.4e-31 137.5 114 60.5
Rhsim13G0002400 Rhododendron simsii HOM05D007717 ORTHO05D009694 7.4e-31 137.5 126 56.3
GSVIVG01028159001 Vitis vinifera HOM05D007717 ORTHO05D009694 9.7e-31 137.1 98 68.4
Atru.chr5.944 Acer truncatum HOM05D007717 ORTHO05D009694 1.3e-30 136.7 129 55.0
Eucgr.K03559 Eucalyptus grandis HOM05D007717 ORTHO05D009694 2.8e-30 135.6 103 67.0
Sabra14G0087200 Salix brachista HOM05D007717 ORTHO05D009694 2.8e-30 135.6 130 56.2
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 3.7e-30 135.2 98 67.3
Manes.05G012500 Manihot esculenta HOM05D007717 ORTHO05D009694 3.7e-30 135.2 96 65.6
CiPaw.08G086800 Carya illinoinensis HOM05D007717 ORTHO05D009694 4.8e-30 134.8 99 66.7
Gohir.D07G134000 Gossypium hirsutum HOM05D007717 ORTHO05D009694 6.3e-30 134.4 129 56.6
Gorai.001G145600 Gossypium raimondii HOM05D007717 ORTHO05D009694 6.3e-30 134.4 129 56.6
ATR0693G230 Amborella trichopoda HOM05D007717 ORTHO05D009694 1.1e-29 133.7 104 61.5
FAN28G2335 Fragaria x ananassa HOM05D007717 ORTHO05D009694 1.4e-29 133.3 128 54.7
Medtr1g086585 Medicago truncatula HOM05D007717 ORTHO05D009694 1.4e-29 133.3 101 66.3
Hma1.2p1_0408F.1_g146470 Hydrangea macrophylla HOM05D007717 ORTHO05D009694 1.8e-29 132.9 98 65.3
RcHm_v2.0_Chr3g0487001 Rosa chinensis HOM05D007717 ORTHO05D009694 1.8e-29 132.9 82 73.2
CsaV3_3G026540 Cucumis sativus L. HOM05D007717 ORTHO05D009694 2.4e-29 132.5 82 74.4
AUR62024600 Chenopodium quinoa HOM05D007717 ORTHO05D009694 3.1e-29 132.1 103 60.2
MELO3C012927.2 Cucumis melo HOM05D007717 ORTHO05D009694 3.1e-29 132.1 82 74.4
FvH4_1g26780 Fragaria vesca HOM05D007717 ORTHO05D009694 5.3e-29 131.3 124 55.6
FAN19G0412 Fragaria x ananassa HOM05D007717 ORTHO05D009694 5.3e-29 131.3 124 55.6
Potri.014G117500 Populus trichocarpa HOM05D007717 ORTHO05D009694 5.3e-29 131.3 131 53.4
Glyma.02G010200 Glycine max HOM05D007717 ORTHO05D009694 9.1e-29 130.6 100 62.0
Nn3g21819 Nelumbo nucifera HOM05D007717 ORTHO05D009694 9.1e-29 130.6 121 55.4
Actinidia17924 Actinidia chinensis HOM05D007717 ORTHO05D009694 1.2e-28 130.2 125 55.2
ClCG10G011620 Citrullus lanatus HOM05D007717 ORTHO05D009694 1.2e-28 130.2 82 72.0
MSTRG.15592 Avicennia marina HOM05D007717 ORTHO05D009694 2.0e-28 129.4 95 66.3
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 2.0e-28 129.4 101 64.4
Cfa001519 Carpinus fangiana HOM05D007717 ORTHO05D009694 2.6e-28 129.0 109 56.9
Lj5g0017185 Lotus japonicus HOM05D007717 ORTHO05D009694 2.6e-28 129.0 82 69.5
EL10As5g23606 Beta vulgaris HOM05D007717 ORTHO05D009694 4.5e-28 128.3 103 61.2
Psat6g160600 Pisum sativum HOM05D007717 ORTHO05D009694 5.9e-28 127.9 101 63.4
Lalb_Chr06g0167011 Lupinus albus HOM05D007717 ORTHO05D009694 7.7e-28 127.5 97 64.9
MBI18_g27382_MAGBIO Magnolia biondii HOM05D007717 ORTHO05D009694 1.7e-27 126.3 100 58.0
TAR362G0991 Trochodendron aralioides HOM05D007717 ORTHO05D009694 1.7e-27 126.3 102 57.8
PGR044G1932 Punica granatum HOM05D007717 ORTHO05D009694 2.9e-27 125.6 119 57.1
QL12p018825 Quercus lobata HOM05D007717 ORTHO05D009694 3.8e-27 125.2 117 53.0
Ciclev10021685m.g Citrus clementina HOM05D007717 ORTHO05D009694 5.0e-27 124.8 109 56.0
PSO210G2166 Papaver somniferum HOM05D007717 ORTHO05D009694 5.0e-27 124.8 100 62.0
Prupe.3G006900 Prunus persica HOM05D007717 ORTHO05D009694 5.0e-27 124.8 102 60.8
arahy.Tifrunner.gnm1.ann1.259I69 Arachis hypogaea HOM05D007717 ORTHO05D009694 6.5e-27 124.4 90 62.2
arahy.Tifrunner.gnm1.ann1.P1ZICW Arachis hypogaea HOM05D007717 ORTHO05D009694 6.5e-27 124.4 90 62.2
SGA_v2.0_scaffold198G41108 Striga asiatica HOM05D007717 ORTHO05D009694 6.5e-27 124.4 83 71.1
MD09G1286700 Malus domestica HOM05D007717 ORTHO05D009694 8.5e-27 124.0 82 68.3
CSS0048227 Camellia sinensis var. sinensis HOM05D007717 ORTHO05D009694 1.4e-26 123.2 89 65.2
Sc17g0000260 Simmondsia chinensis HOM05D007717 ORTHO05D009694 1.4e-26 123.2 104 59.6
SalBow2G0697 Salvia bowleyana HOM05D007717 ORTHO05D009694 1.9e-26 122.9 105 57.1
Phvul.007G212300 Phaseolus vulgaris HOM05D007717 ORTHO05D009694 4.2e-26 121.7 82 68.3
VMungo0720G1298 Vigna mungo HOM05D007717 ORTHO05D009694 4.2e-26 121.7 82 68.3
HanXRQChr04g0106271 Helianthus annuus HOM05D007717 ORTHO05D009694 7.2e-26 120.9 82 69.5
Nitab4.5_0002828g0050 Nicotiana tabacum HOM05D007717 ORTHO05D009694 9.4e-26 120.6 121 53.7
Sed0016465 Sechium edule HOM05D007717 ORTHO05D009694 1.2e-25 120.2 82 68.3
Hund02948 Selenicereus undatus HOM05D007717 ORTHO05D009694 1.6e-25 119.8 83 69.9
Migut.N00924 Erythranthe guttata HOM05D007717 ORTHO05D009694 2.7e-25 119.0 102 57.8
ECA236G3512 Erigeron canadensis HOM05D007717 ORTHO05D009694 1.0e-24 117.1 82 64.6
CAN.G1209.17 Capsicum annuum HOM05D007717 ORTHO05D009694 6.7e-24 114.4 88 63.6
Oeu038956.1 Olea europaea HOM05D007717 ORTHO05D009694 8.8e-24 114.0 94 57.4
Aqoxy2G02636 Aquilegia oxysepala HOM05D007717 ORTHO05D009694 1.5e-23 113.2 95 57.9
Cc01_g21670 Coffea canephora HOM05D007717 ORTHO05D009694 2.0e-23 112.8 82 69.5
Nitab4.5_0004006g0040 Nicotiana tabacum HOM05D007717 ORTHO05D009694 5.7e-23 111.3 128 50.0
unitig_748.g7768 Utricularia gibba HOM05D007717 ORTHO05D009694 1.7e-22 109.8 88 60.2
Gohir.A07G129700 Gossypium hirsutum HOM05D007717 ORTHO05D009694 2.4e-21 105.9 70 70.0
Os01g0252600 Oryza sativa ssp. japonica HOM05D007717 ORTHO05D009694 2.2e-19 99.4 99 53.5
Zm00001eb127510 Zea mays HOM05D007717 ORTHO05D009694 2.1e-17 92.8 83 57.8
AagrBONN_evm.TU.Sc2ySwM_344.3558 Anthoceros agrestis HOM05D007717 ORTHO05D009694 2.0e-15 86.3 68 63.2
Pp3c5_22240 Physcomitrium patens HOM05D007717 ORTHO05D009694 4.4e-15 85.1 132 40.9
Mapoly0015s0128 Marchantia polymorpha HOM05D007717 ORTHO05D009694 7.4e-15 84.3 83 51.8
SMO117G0327 Selaginella moellendorffii HOM05D007717 ORTHO05D009694 9.7e-15 84.0 68 57.4
Lj2C1210T5 Lonicera japonica HOM05D007717 ORTHO05D009694 2.8e-14 82.4 106 49.1
CBR_g40482 Chara braunii HOM05D001161 ORTHO05D000497 1.1e-10 70.5 71 53.5
Ah.11g049130 Amaranthus hybridus HOM05D007717 ORTHO05D009694 4.4e-07 58.5 48 60.4
Cre17.g729900 Chlamydomonas reinhardtii HOM05D007717 ORTHO05D009694 1.7e-06 56.6 61 47.5


User provided reference genes

Program Settings