Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46101 Brassica carinata HOM05D000390 ORTHO05D001192 8.3e-56 219.9 96 100.0
C06p39870 Brassica napus HOM05D000390 ORTHO05D001192 8.9e-34 146.7 73 87.7
BolC6t39077H Brassica oleracea HOM05D000390 ORTHO05D001192 2.0e-25 119.0 85 67.1
BcaB03g15261 Brassica carinata HOM05D000390 ORTHO05D001192 1.4e-23 112.8 54 85.2
BraA07t30974Z Brassica rapa HOM05D000390 ORTHO05D001192 2.7e-22 108.6 54 81.5
AL2G24580 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 3.5e-22 108.2 54 77.8
AL2G24590 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 4.6e-22 107.8 54 81.5
A07p33480 Brassica napus HOM05D000390 ORTHO05D001192 4.6e-22 107.8 54 81.5
BolC6t39417H Brassica oleracea HOM05D000390 ORTHO05D001192 4.6e-22 107.8 54 79.6
Carub.0002s1270 Capsella rubella HOM05D000390 ORTHO05D001192 6.0e-22 107.5 54 75.9
Thhalv10018712m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 3.0e-21 105.1 54 77.8
AT1G66620 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 6.6e-21 104.0 54 75.9
BcaB03g14740 Brassica carinata HOM05D000390 ORTHO05D001192 6.6e-21 104.0 83 54.2
BcaB03g14735 Brassica carinata HOM05D000390 ORTHO05D001192 8.6e-21 103.6 52 80.8
Thhalv10018806m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 1.1e-20 103.2 54 74.1
Carub.0002s1267 Capsella rubella HOM05D000390 ORTHO05D001192 2.5e-20 102.1 54 72.2
Carub.0002s1264 Capsella rubella HOM05D000390 ORTHO05D001192 4.3e-20 101.3 54 74.1
CARHR058600 Cardamine hirsuta HOM05D000390 ORTHO05D001192 4.3e-20 101.3 54 72.2
Sp5g24750 Schrenkiella parvula HOM05D000390 ORTHO05D001192 1.2e-19 99.8 49 75.5
BcaC08g46410 Brassica carinata HOM05D000390 ORTHO05D001192 2.1e-19 99.0 54 75.9
C06p43410 Brassica napus HOM05D000390 ORTHO05D001192 2.1e-19 99.0 54 75.9
BcaB03g14739 Brassica carinata HOM05D000390 ORTHO05D001192 2.8e-19 98.6 49 77.6
A07p36020 Brassica napus HOM05D000390 ORTHO05D001192 2.8e-19 98.6 54 74.1
BraA07t31182Z Brassica rapa HOM05D000390 ORTHO05D001192 2.8e-19 98.6 54 74.1
Carub.0002s1265 Capsella rubella HOM05D000390 ORTHO05D001192 2.8e-19 98.6 54 70.4
Carub.0002s1266 Capsella rubella HOM05D000390 ORTHO05D001192 2.8e-19 98.6 54 70.4
BraA03t11044Z Brassica rapa HOM05D000390 ORTHO05D001192 3.6e-19 98.2 53 73.6
Carub.0002s1269 Capsella rubella HOM05D000390 ORTHO05D001192 2.3e-18 95.5 54 72.2
Carub.0002s1268 Capsella rubella HOM05D000390 ORTHO05D001192 1.5e-17 92.8 54 66.7
Carub.0002s1280 Capsella rubella HOM05D000390 ORTHO05D001192 7.6e-17 90.5 54 59.3
BcaC08g46408 Brassica carinata HOM05D000390 ORTHO05D001192 9.9e-17 90.1 52 69.2
A05p14370 Brassica napus HOM05D000390 ORTHO05D001192 1.3e-16 89.7 54 63.0
BraA05t20365Z Brassica rapa HOM05D000390 ORTHO05D001192 1.3e-16 89.7 54 63.0
CARHR214760 Cardamine hirsuta HOM05D000390 ORTHO05D001192 2.9e-16 88.6 54 64.8
AL2G24600 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 3.2e-15 85.1 56 62.5
Thhalv10027866m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 3.2e-15 85.1 54 64.8
Thhalv10028270m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 4.1e-15 84.7 54 59.3
BcaC02g09616 Brassica carinata HOM05D000390 ORTHO05D001192 7.1e-15 84.0 54 63.0
C04p44770 Brassica napus HOM05D000390 ORTHO05D001192 7.1e-15 84.0 54 63.0
BolC4t26051H Brassica oleracea HOM05D000390 ORTHO05D001192 7.1e-15 84.0 54 63.0
Thhalv10027865m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 9.2e-15 83.6 54 63.0
AT1G66630 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 1.6e-14 82.8 55 61.8
AL7G46860 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 3.5e-14 81.6 54 64.8
AL7G46870 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 3.5e-14 81.6 54 61.1
AL7G53110 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 6.0e-14 80.9 54 61.1
BolC4t26543H Brassica oleracea HOM05D000390 ORTHO05D001192 6.0e-14 80.9 54 59.3
Carub.0007s3314 Capsella rubella HOM05D000390 ORTHO05D001192 6.0e-14 80.9 54 59.3
AL7G46850 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 7.8e-14 80.5 54 61.1
Carub.0002s1187 Capsella rubella HOM05D000390 ORTHO05D001192 1.0e-13 80.1 53 62.3
A04p15330 Brassica napus HOM05D000390 ORTHO05D001192 1.3e-13 79.7 54 59.3
BraA04t17174Z Brassica rapa HOM05D000390 ORTHO05D001192 1.3e-13 79.7 54 59.3
AT5G37910 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 1.7e-13 79.3 54 59.3
Carub.0007s3309 Capsella rubella HOM05D000390 ORTHO05D001192 2.3e-13 79.0 54 57.4
Carub.0007s3357 Capsella rubella HOM05D000390 ORTHO05D001192 3.0e-13 78.6 61 55.7
C04p49560 Brassica napus HOM05D000390 ORTHO05D001192 5.1e-13 77.8 54 57.4
AT5G37890 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 8.6e-13 77.0 54 57.4
Carub.0007s3308 Capsella rubella HOM05D000390 ORTHO05D001192 8.6e-13 77.0 89 43.8
CARHR058690 Cardamine hirsuta HOM05D000390 ORTHO05D001192 8.6e-13 77.0 49 63.3
Thhalv10027852m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 8.6e-13 77.0 54 59.3
AL8G39760 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 1.1e-12 76.6 53 56.6
Carub.0007s3317 Capsella rubella HOM05D000390 ORTHO05D001192 1.1e-12 76.6 53 56.6
Sp7g04090 Schrenkiella parvula HOM05D000390 ORTHO05D001192 1.1e-12 76.6 54 57.4
BcaC02g08878 Brassica carinata HOM05D000390 ORTHO05D001192 1.5e-12 76.3 54 55.6
BcaC08g46046 Brassica carinata HOM05D000390 ORTHO05D001192 1.5e-12 76.3 44 79.5
A04p11030 Brassica napus HOM05D000390 ORTHO05D001192 1.5e-12 76.3 54 59.3
Thhalv10027864m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 1.5e-12 76.3 54 57.4
AT1G66610 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 1.9e-12 75.9 39 71.8
BolC6t36992H Brassica oleracea HOM05D000390 ORTHO05D001192 1.9e-12 75.9 89 40.4
Thhalv10028216m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 1.9e-12 75.9 54 57.4
Carub.0002s1278 Capsella rubella HOM05D000390 ORTHO05D001192 3.3e-12 75.1 55 60.0
CARHR214830 Cardamine hirsuta HOM05D000390 ORTHO05D001192 3.3e-12 75.1 73 49.3
AL2G24620 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 4.3e-12 74.7 53 56.6
Carub.0008s2352 Capsella rubella HOM05D000390 ORTHO05D001192 4.3e-12 74.7 62 46.8
Carub.0006s2401 Capsella rubella HOM05D000390 ORTHO05D001192 5.6e-12 74.3 53 56.6
CARHR214840 Cardamine hirsuta HOM05D000390 ORTHO05D001192 5.6e-12 74.3 53 58.5
AL7G53100 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 7.3e-12 73.9 68 47.1
AL7G53060 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 9.6e-12 73.6 54 57.4
BraA07t29658Z Brassica rapa HOM05D000390 ORTHO05D001192 1.2e-11 73.2 89 38.2
Carub.0002s1286 Capsella rubella HOM05D000390 ORTHO05D001192 1.2e-11 73.2 53 56.6
Carub.0005s1231 Capsella rubella HOM05D000390 ORTHO05D001192 1.6e-11 72.8 54 55.6
AT1G66660 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 2.1e-11 72.4 62 50.0
AT5G37900 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 2.1e-11 72.4 54 53.7
Carub.0002s1283 Capsella rubella HOM05D000390 ORTHO05D001192 2.1e-11 72.4 53 52.8
THA.LOC104825614 Tarenaya hassleriana HOM05D000390 ORTHO05D001192 2.1e-11 72.4 54 55.6
Carub.0007s3313 Capsella rubella HOM05D000390 ORTHO05D001192 2.8e-11 72.0 54 51.9
Aa31LG9G17300 Aethionema arabicum HOM05D000390 ORTHO05D001192 3.6e-11 71.6 54 53.7
C06p19350 Brassica napus HOM05D000390 ORTHO05D001192 6.2e-11 70.9 53 52.8
CARHR214860 Cardamine hirsuta HOM05D000390 ORTHO05D001192 6.2e-11 70.9 54 51.9
Sp7g05350 Schrenkiella parvula HOM05D000390 ORTHO05D001192 6.2e-11 70.9 54 55.6
Carub.0002s1282 Capsella rubella HOM05D000390 ORTHO05D001192 8.1e-11 70.5 54 53.7
CARHR058710 Cardamine hirsuta HOM05D000390 ORTHO05D001192 8.1e-11 70.5 53 52.8
Thhalv10028190m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 8.1e-11 70.5 54 51.9
A04p11090 Brassica napus HOM05D000390 ORTHO05D001192 1.1e-10 70.1 54 50.0
Carub.0005s1229 Capsella rubella HOM05D000390 ORTHO05D001192 1.1e-10 70.1 53 52.8
Carub.0002s1271 Capsella rubella HOM05D000390 ORTHO05D001192 1.4e-10 69.7 50 54.0
THA.LOC104822444 Tarenaya hassleriana HOM05D000390 ORTHO05D001192 1.4e-10 69.7 54 50.0
BcaB02g08022 Brassica carinata HOM05D000390 ORTHO05D001192 1.8e-10 69.3 54 51.9
A07p19520 Brassica napus HOM05D000390 ORTHO05D001192 1.8e-10 69.3 89 37.1
Carub.0006s2402 Capsella rubella HOM05D000390 ORTHO05D001192 2.4e-10 68.9 54 53.7
Carub.0006s2403 Capsella rubella HOM05D000390 ORTHO05D001192 2.4e-10 68.9 54 53.7
Sp7g04030 Schrenkiella parvula HOM05D000390 ORTHO05D001192 2.4e-10 68.9 55 50.9
AT5G37870 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 3.1e-10 68.6 54 51.9
BcaC08g44480 Brassica carinata HOM05D000390 ORTHO05D001192 3.1e-10 68.6 52 51.9
CARHR058650 Cardamine hirsuta HOM05D000390 ORTHO05D001192 4.0e-10 68.2 33 75.8
CARHR214810 Cardamine hirsuta HOM05D000390 ORTHO05D001192 4.0e-10 68.2 54 53.7
Thhalv10028143m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 4.0e-10 68.2 53 50.9
BcaB03g15257 Brassica carinata HOM05D000390 ORTHO05D001192 5.2e-10 67.8 54 53.7
Thhalv10027819m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 5.2e-10 67.8 54 51.9
Thhalv10028229m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 5.2e-10 67.8 56 55.4
Sp5g21600 Schrenkiella parvula HOM05D000390 ORTHO05D001192 5.2e-10 67.8 53 52.8
SGA_v2.0_scaffold147G36320 Striga asiatica HOM05D000390 ORTHO05D001192 5.2e-10 67.8 52 50.0
SGA_v2.0_scaffold329G48863 Striga asiatica HOM05D000390 ORTHO05D001192 5.2e-10 67.8 86 32.6
AL7G53090 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 6.8e-10 67.4 53 52.8
Sp5g21605 Schrenkiella parvula HOM05D000390 ORTHO05D001192 8.9e-10 67.0 53 52.8
BcaC02g09622 Brassica carinata HOM05D000390 ORTHO05D001192 1.2e-09 66.6 54 51.9
C04p44810 Brassica napus HOM05D000390 ORTHO05D001192 1.2e-09 66.6 54 51.9
BolC4t26058H Brassica oleracea HOM05D000390 ORTHO05D001192 1.2e-09 66.6 54 51.9
BolC6t37130H Brassica oleracea HOM05D000390 ORTHO05D001192 1.2e-09 66.6 53 50.9
Thhalv10018780m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 1.2e-09 66.6 53 52.8
SGA_v2.0_scaffold147G36325 Striga asiatica HOM05D000390 ORTHO05D001192 1.5e-09 66.2 52 48.1
A03p25660 Brassica napus HOM05D000390 ORTHO05D001192 2.6e-09 65.5 54 50.0
BcaB02g07930 Brassica carinata HOM05D000390 ORTHO05D001192 3.4e-09 65.1 53 45.3
BcaB06g27154 Brassica carinata HOM05D000390 ORTHO05D001192 3.4e-09 65.1 54 50.0
A07p20500 Brassica napus HOM05D000390 ORTHO05D001192 3.4e-09 65.1 53 50.9
CARHR154710 Cardamine hirsuta HOM05D000390 ORTHO05D001192 3.4e-09 65.1 53 50.9
Carub.0002s1275 Capsella rubella HOM05D000390 ORTHO05D001192 4.4e-09 64.7 36 66.7
MSTRG.23610 Avicennia marina HOM05D000390 ORTHO05D001192 5.8e-09 64.3 54 48.1
AL7G46770 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 7.6e-09 63.9 55 52.7
BcaB01g04031 Brassica carinata HOM05D000390 ORTHO05D001192 1.3e-08 63.2 54 51.9
Carub.0002s1279 Capsella rubella HOM05D000390 ORTHO05D001192 1.3e-08 63.2 54 48.1
MSTRG.3531 Avicennia marina HOM05D000390 ORTHO05D001192 1.7e-08 62.8 52 44.2
Medtr5g076505 Medicago truncatula HOM05D000218 ORTHO05D001192 2.2e-08 62.4 42 59.5
AL7G52890 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 2.9e-08 62.0 54 48.1
BcaB07g31607 Brassica carinata HOM05D000390 ORTHO05D001192 1.1e-07 60.1 55 47.3
Haze_14210 Corylus avellana HOM05D000390 ORTHO05D001192 1.1e-07 60.1 49 46.9
Sabra17G0104100 Salix brachista HOM05D000390 ORTHO05D001192 1.1e-07 60.1 67 34.3
CARHR272990 Cardamine hirsuta HOM05D000390 ORTHO05D001192 1.4e-07 59.7 56 50.0
Psat2g043040 Pisum sativum HOM05D000390 ORTHO05D001192 1.4e-07 59.7 52 38.5
Carub.0002s0834 Capsella rubella HOM05D000390 ORTHO05D001192 1.9e-07 59.3 54 46.3
Medtr5g076810 Medicago truncatula HOM05D000218 ORTHO05D001192 1.9e-07 59.3 49 46.9
Eucgr.J01542 Eucalyptus grandis HOM05D000390 ORTHO05D001192 2.4e-07 58.9 54 44.4
Phvul.002G201000 Phaseolus vulgaris HOM05D000390 ORTHO05D001192 2.4e-07 58.9 54 44.4
Carub.0007s3310 Capsella rubella HOM05D000390 ORTHO05D001192 3.2e-07 58.5 53 45.3
MBI10_g07288_MAGBIO Magnolia biondii HOM05D000390 ORTHO05D001192 3.2e-07 58.5 51 41.2
BcaC08g46409 Brassica carinata HOM05D000390 ORTHO05D001192 4.2e-07 58.2 31 67.7
SGA_v2.0_scaffold51G18836 Striga asiatica HOM05D000390 ORTHO05D001192 4.2e-07 58.2 51 43.1
arahy.Tifrunner.gnm1.ann1.V5N9VT Arachis hypogaea HOM05D000390 ORTHO05D001192 5.4e-07 57.8 49 46.9
Migut.H00260 Erythranthe guttata HOM05D000390 ORTHO05D001192 5.4e-07 57.8 54 40.7
Glyma.05G124500 Glycine max HOM05D000390 ORTHO05D001192 5.4e-07 57.8 54 42.6
Psat2g042640 Pisum sativum HOM05D000390 ORTHO05D001192 5.4e-07 57.8 54 40.7
VMungo0251G2516 Vigna mungo HOM05D000390 ORTHO05D001192 5.4e-07 57.8 54 42.6
arahy.Tifrunner.gnm1.ann1.R8LD9K Arachis hypogaea HOM05D000390 ORTHO05D001192 7.1e-07 57.4 53 39.6
TPR.G5333 Trifolium pratense HOM05D000390 ORTHO05D001192 7.1e-07 57.4 45 46.7
Aa31LG1G18280 Aethionema arabicum HOM05D000390 ORTHO05D001192 9.3e-07 57.0 54 50.0
arahy.Tifrunner.gnm1.ann1.Y6I14R Arachis hypogaea HOM05D000390 ORTHO05D001192 9.3e-07 57.0 53 37.7
Medtr5g067400 Medicago truncatula HOM05D000390 ORTHO05D001192 1.2e-06 56.6 42 52.4
Glyma.08G079600 Glycine max HOM05D000390 ORTHO05D001192 2.1e-06 55.8 49 44.9
BcaB01g03215 Brassica carinata HOM05D000390 ORTHO05D001192 2.7e-06 55.5 44 54.5
Carub.0005s1234 Capsella rubella HOM05D000390 ORTHO05D001192 3.5e-06 55.1 54 46.3
SGA_v2.0_scaffold6G03260 Striga asiatica HOM05D000390 ORTHO05D001192 3.5e-06 55.1 55 40.0
TPR.G18791 Trifolium pratense HOM05D000390 ORTHO05D001192 3.5e-06 55.1 42 52.4
TPR.G5303 Trifolium pratense HOM05D000390 ORTHO05D001192 3.5e-06 55.1 54 42.6
Medtr5g061290 Medicago truncatula HOM05D000390 ORTHO05D001192 4.6e-06 54.7 40 50.0
Medtr7g024290 Medicago truncatula HOM05D000390 ORTHO05D001192 4.6e-06 54.7 49 44.9
Psat7g094040 Pisum sativum HOM05D000390 ORTHO05D001192 4.6e-06 54.7 49 42.9
SHI30134 Sapria himalayana HOM05D000002 ORTHO05D000001 4.6e-06 54.7 49 40.8
Ca_18302_v3 Cicer arietinum L. HOM05D000390 ORTHO05D001192 7.8e-06 53.9 49 44.9
Medtr1g046650 Medicago truncatula HOM05D000218 ORTHO05D001192 7.8e-06 53.9 42 52.4
Medtr4g094468 Medicago truncatula HOM05D000390 ORTHO05D001192 7.8e-06 53.9 49 42.9


User provided reference genes

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