Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45487 Brassica carinata HOM05D004566 ORTHO05D006041 4.7e-169 597.8 307 100.0
BolC6t38277H Brassica oleracea HOM05D004566 ORTHO05D006041 3.1e-157 558.5 339 88.2
BcaB02g07097 Brassica carinata HOM05D004566 ORTHO05D006041 2.7e-153 545.4 353 82.2
Sp5g32320 Schrenkiella parvula HOM05D004566 ORTHO05D006041 4.7e-153 544.7 353 82.4
AT1G77140 Arabidopsis thaliana HOM05D004566 ORTHO05D006041 8.0e-153 543.9 353 81.9
AL2G37320 Arabidopsis lyrata HOM05D004566 ORTHO05D006041 3.0e-152 542.0 353 81.9
Thhalv10018344m.g Eutrema salsugineum HOM05D004566 ORTHO05D006041 4.0e-152 541.6 353 81.9
Carub.0002s2403 Capsella rubella HOM05D004566 ORTHO05D006041 1.2e-151 540.0 353 81.6
C02p34300 Brassica napus HOM05D004566 ORTHO05D006041 2.6e-151 538.9 353 81.6
A02p21150 Brassica napus HOM05D004566 ORTHO05D006041 7.5e-151 537.3 353 81.3
CARHR070630 Cardamine hirsuta HOM05D004566 ORTHO05D006041 1.8e-149 532.7 353 80.2
BcaB05g25023 Brassica carinata HOM05D004566 ORTHO05D006041 2.4e-149 532.3 354 81.4
BraA02t07132Z Brassica rapa HOM05D004566 ORTHO05D006041 1.0e-147 526.9 373 77.2
THA.LOC104810036 Tarenaya hassleriana HOM05D004566 ORTHO05D006041 1.2e-145 520.0 353 77.3
Aa31LG11G11410 Aethionema arabicum HOM05D004566 ORTHO05D006041 3.0e-144 515.4 387 73.1
Solyc04g064820.3 Solanum lycopersicum HOM05D004566 ORTHO05D006041 1.7e-139 499.6 353 72.8
Sopen04g026780 Solanum pennellii HOM05D004566 ORTHO05D006041 1.7e-139 499.6 353 72.8
Nitab4.5_0000299g0160 Nicotiana tabacum HOM05D004566 ORTHO05D006041 6.6e-139 497.7 353 73.1
Nitab4.5_0010241g0020 Nicotiana tabacum HOM05D004566 ORTHO05D006041 6.6e-139 497.7 353 73.1
CAN.G744.14 Capsicum annuum HOM05D004566 ORTHO05D006041 1.9e-138 496.1 353 72.8
CSS0027392 Camellia sinensis var. sinensis HOM05D004566 ORTHO05D006041 4.3e-138 495.0 353 73.9
Atru.chr13.1721 Acer truncatum HOM05D004566 ORTHO05D006041 7.3e-138 494.2 353 74.2
Ciclev10000721m.g Citrus clementina HOM05D004566 ORTHO05D006041 7.3e-138 494.2 351 74.6
Hma1.2p1_0107F.1_g051470 Hydrangea macrophylla HOM05D004566 ORTHO05D006041 9.5e-138 493.8 353 73.4
TAR381G1517 Trochodendron aralioides HOM05D004566 ORTHO05D006041 1.2e-137 493.4 350 73.7
vmacro05453 Vaccinium macrocarpon HOM05D004566 ORTHO05D006041 1.2e-137 493.4 351 73.8
Actinidia15158 Actinidia chinensis HOM05D004566 ORTHO05D006041 2.1e-137 492.7 350 73.7
CiPaw.15G021200 Carya illinoinensis HOM05D004566 ORTHO05D006041 3.6e-137 491.9 351 72.6
Lj4A692G26 Lonicera japonica HOM05D004566 ORTHO05D006041 8.0e-137 490.7 353 73.1
Manes.18G088000 Manihot esculenta HOM05D004566 ORTHO05D006041 1.0e-136 490.3 351 72.6
GSVIVG01010038001 Vitis vinifera HOM05D004566 ORTHO05D006041 1.0e-136 490.3 353 73.4
Haze_17715 Corylus avellana HOM05D004566 ORTHO05D006041 2.3e-136 489.2 351 73.2
C06p31440 Brassica napus HOM05D004566 ORTHO05D006041 4.0e-136 488.4 335 78.8
ECA232G5048 Erigeron canadensis HOM05D004566 ORTHO05D006041 4.0e-136 488.4 351 72.4
PGR042G0484 Punica granatum HOM05D004566 ORTHO05D006041 5.2e-136 488.0 351 72.4
Potri.002G071600 Populus trichocarpa HOM05D004566 ORTHO05D006041 8.9e-136 487.3 351 72.9
Cfa018360 Carpinus fangiana HOM05D004566 ORTHO05D006041 1.2e-135 486.9 351 72.9
HanXRQChr09g0275251 Helianthus annuus HOM05D004566 ORTHO05D006041 1.2e-135 486.9 351 72.4
Gorai.013G105000 Gossypium raimondii HOM05D004566 ORTHO05D006041 2.6e-135 485.7 353 72.2
TWI60G0810 Tripterygium wilfordii HOM05D004566 ORTHO05D006041 2.6e-135 485.7 351 73.2
Thecc.08G145200 Theobroma cacao HOM05D004566 ORTHO05D006041 4.4e-135 485.0 353 72.2
Duzib093G0819 Durio zibethinus HOM05D004566 ORTHO05D006041 5.7e-135 484.6 353 72.2
Sc02g0000500 Simmondsia chinensis HOM05D004566 ORTHO05D006041 9.8e-135 483.8 351 71.5
MD05G1016500 Malus domestica HOM05D004566 ORTHO05D006041 1.3e-134 483.4 351 72.6
Lsat_1_v5_gn_9_77820 Lactuca sativa HOM05D004566 ORTHO05D006041 2.2e-134 482.6 351 71.8
QL09p046738 Quercus lobata HOM05D004566 ORTHO05D006041 2.2e-134 482.6 353 72.0
Medtr3g090170 Medicago truncatula HOM05D004566 ORTHO05D006041 3.7e-134 481.9 351 71.8
Potri.005G188000 Populus trichocarpa HOM05D004566 ORTHO05D006041 4.9e-134 481.5 351 71.8
Cc03_g13150 Coffea canephora HOM05D004566 ORTHO05D006041 1.1e-133 480.3 353 71.7
Nn5g28636 Nelumbo nucifera HOM05D004566 ORTHO05D006041 1.1e-133 480.3 351 71.5
arahy.Tifrunner.gnm1.ann1.WMJ7PV Arachis hypogaea HOM05D004566 ORTHO05D006041 1.4e-133 479.9 351 71.5
ClCG08G006480 Citrullus lanatus HOM05D004566 ORTHO05D006041 1.4e-133 479.9 353 71.7
Rhsim02G0231500 Rhododendron simsii HOM05D004566 ORTHO05D006041 1.4e-133 479.9 371 69.0
Ca_16654_v3 Cicer arietinum L. HOM05D004566 ORTHO05D006041 1.8e-133 479.6 351 71.5
Duzib041G0052 Durio zibethinus HOM05D004566 ORTHO05D006041 2.4e-133 479.2 353 71.1
Gohir.D03G061100 Gossypium hirsutum HOM05D004566 ORTHO05D006041 2.4e-133 479.2 353 72.0
SGA_v2.0_scaffold19G08652 Striga asiatica HOM05D004566 ORTHO05D006041 2.4e-133 479.2 353 70.5
TWI15G0549 Tripterygium wilfordii HOM05D004566 ORTHO05D006041 3.2e-133 478.8 351 72.6
Glyma.04G240400 Glycine max HOM05D004566 ORTHO05D006041 4.1e-133 478.4 351 71.2
Lalb_Chr23g0271371 Lupinus albus HOM05D004566 ORTHO05D006041 4.1e-133 478.4 351 71.2
arahy.Tifrunner.gnm1.ann1.FR9HZZ Arachis hypogaea HOM05D004566 ORTHO05D006041 5.4e-133 478.0 351 71.2
arahy.Tifrunner.gnm1.ann1.J7270J Arachis hypogaea HOM05D004566 ORTHO05D006041 5.4e-133 478.0 351 71.2
Migut.N03233 Erythranthe guttata HOM05D004566 ORTHO05D006041 7.0e-133 477.6 353 70.5
Glyma.06G123000 Glycine max HOM05D004566 ORTHO05D006041 7.0e-133 477.6 351 70.7
DCAR_023123 Daucus carota HOM05D004566 ORTHO05D006041 9.2e-133 477.2 351 71.8
Psat7g096680 Pisum sativum HOM05D004566 ORTHO05D006041 1.2e-132 476.9 351 70.9
QL02p025237 Quercus lobata HOM05D004566 ORTHO05D006041 1.2e-132 476.9 353 70.5
arahy.Tifrunner.gnm1.ann1.9SPN5G Arachis hypogaea HOM05D004566 ORTHO05D006041 1.6e-132 476.5 351 70.9
Lalb_Chr11g0066451 Lupinus albus HOM05D004566 ORTHO05D006041 1.6e-132 476.5 351 70.4
Gohir.A02G108700 Gossypium hirsutum HOM05D004566 ORTHO05D006041 2.0e-132 476.1 353 71.7
MELO3C008406.2 Cucumis melo HOM05D004566 ORTHO05D006041 2.7e-132 475.7 353 71.1
RcHm_v2.0_Chr6g0277061 Rosa chinensis HOM05D004566 ORTHO05D006041 5.9e-132 474.6 353 70.5
SGA_v2.0_scaffold25G11162 Striga asiatica HOM05D004566 ORTHO05D006041 5.9e-132 474.6 353 70.3
MSTRG.24197 Avicennia marina HOM05D004566 ORTHO05D006041 1.3e-131 473.4 353 70.3
Sed0000192 Sechium edule HOM05D004566 ORTHO05D006041 1.3e-131 473.4 351 71.2
Eucgr.F02736 Eucalyptus grandis HOM05D004566 ORTHO05D006041 1.7e-131 473.0 351 70.7
CsaV3_6G030940 Cucumis sativus L. HOM05D004566 ORTHO05D006041 2.3e-131 472.6 353 70.3
Manes.02G175600 Manihot esculenta HOM05D004566 ORTHO05D006041 2.3e-131 472.6 366 69.1
Sabra05G0143600 Salix brachista HOM05D004566 ORTHO05D006041 2.3e-131 472.6 366 69.4
Lj1g0025718 Lotus japonicus HOM05D004566 ORTHO05D006041 5.0e-131 471.5 351 70.4
ATR0706G031 Amborella trichopoda HOM05D004566 ORTHO05D006041 1.1e-130 470.3 353 70.0
Phvul.009G135100 Phaseolus vulgaris HOM05D004566 ORTHO05D006041 1.1e-130 470.3 351 70.7
TPR.G18763 Trifolium pratense HOM05D004566 ORTHO05D006041 1.1e-130 470.3 353 69.4
Ah.04g149960 Amaranthus hybridus HOM05D004566 ORTHO05D006041 1.5e-130 469.9 353 69.7
SalBow6G5540 Salvia bowleyana HOM05D004566 ORTHO05D006041 1.5e-130 469.9 351 69.8
VMungo1309G3090 Vigna mungo HOM05D004566 ORTHO05D006041 1.5e-130 469.9 351 70.1
CANSAT25G2177 Cannabis sativa HOM05D004566 ORTHO05D006041 1.9e-130 469.5 351 70.7
PSO017G6839 Papaver somniferum HOM05D004566 ORTHO05D006041 2.5e-130 469.2 350 69.7
Aqoxy6G02084 Aquilegia oxysepala HOM05D004566 ORTHO05D006041 3.3e-130 468.8 351 69.8
AUR62018460 Chenopodium quinoa HOM05D004566 ORTHO05D006041 7.3e-130 467.6 353 69.7
AUR62020958 Chenopodium quinoa HOM05D004566 ORTHO05D006041 7.3e-130 467.6 353 69.7
SHI09399 Sapria himalayana HOM05D004566 ORTHO05D006041 1.2e-129 466.8 353 68.3
FAN15G1625 Fragaria x ananassa HOM05D004566 ORTHO05D006041 1.6e-129 466.5 353 69.1
FAN24G3481 Fragaria x ananassa HOM05D004566 ORTHO05D006041 6.2e-129 464.5 353 68.8
FAN27G2999 Fragaria x ananassa HOM05D004566 ORTHO05D006041 6.2e-129 464.5 353 68.8
MBI11_g07422_MAGBIO Magnolia biondii HOM05D004566 ORTHO05D006041 1.4e-128 463.4 352 69.3
FAN20G3136 Fragaria x ananassa HOM05D004566 ORTHO05D006041 1.8e-128 463.0 353 68.6
PSO170G1270 Papaver somniferum HOM05D004566 ORTHO05D006041 1.8e-128 463.0 350 69.4
BcaC08g45467 Brassica carinata HOM05D004566 ORTHO05D006041 5.2e-128 461.5 343 73.5
FvH4_2g14590 Fragaria vesca HOM05D004566 ORTHO05D006041 5.2e-128 461.5 353 68.6
HPP92_000105 Vanilla planifolia HOM05D004566 ORTHO05D006041 2.0e-127 459.5 350 68.3
CiPaw.16G017400 Carya illinoinensis HOM05D004566 ORTHO05D006041 2.3e-123 446.0 336 69.9
Zm00001eb172280 Zea mays HOM05D004566 ORTHO05D006041 9.5e-122 440.7 351 65.2
EL10Ac5g10990 Beta vulgaris HOM05D004566 ORTHO05D006041 1.6e-121 439.9 398 60.6
Os02g0437800 Oryza sativa ssp. japonica HOM05D004566 ORTHO05D006041 1.6e-121 439.9 351 65.2
Oeu014477.2 Olea europaea HOM05D004566 ORTHO05D006041 2.5e-114 416.0 539 47.5
Prupe.8G019800 Prunus persica HOM05D004566 ORTHO05D006041 6.8e-112 407.9 315 69.5
Peaxi162Scf00263g00417 Petunia axillaris HOM05D004566 ORTHO05D006041 8.4e-110 401.0 353 61.8
Mapoly0133s0009 Marchantia polymorpha HOM05D004566 ORTHO05D006041 4.1e-109 398.7 353 59.5
BolC6t38256H Brassica oleracea HOM05D004566 ORTHO05D006041 8.6e-107 391.0 336 66.7
Pp3c18_21360 Physcomitrium patens HOM05D004566 ORTHO05D006041 1.5e-103 380.2 353 55.5
COL.COLO4_38311 Corchorus olitorius HOM05D004566 ORTHO05D006041 2.7e-100 369.4 353 59.2
CBR_g40854 Chara braunii HOM05D004566 ORTHO05D006041 6.0e-100 368.2 353 55.2
SMO118G0298 Selaginella moellendorffii HOM05D004566 ORTHO05D006041 2.3e-99 366.3 351 55.3
COL.COLO4_03835 Corchorus olitorius HOM05D004566 ORTHO05D006041 2.7e-84 316.2 324 56.5
unitig_52.g17535 Utricularia gibba HOM05D004566 ORTHO05D006041 5.1e-83 312.0 322 55.3
SEGI_30655 Sequoiadendron giganteum HOM05D004566 ORTHO05D006041 4.3e-82 308.9 248 65.3
QL09p046848 Quercus lobata HOM05D004566 ORTHO05D006041 2.5e-77 293.1 219 70.3
CDE06G0573 Ceratophyllum demersum HOM05D004566 ORTHO05D006041 6.7e-75 285.0 219 66.7
AagrBONN_evm.TU.Sc2ySwM_344.5277 Anthoceros agrestis HOM05D004566 ORTHO05D006041 1.5e-74 283.9 285 52.3
PRCOL_00003824 Prasinoderma coloniale HOM05D004566 ORTHO05D006041 4.2e-61 239.2 351 38.5
BcaC08g45465 Brassica carinata HOM05D004566 ORTHO05D006041 4.8e-57 225.7 302 50.3
C06p31110 Brassica napus HOM05D004566 ORTHO05D006041 6.9e-56 221.9 117 94.9
MCO01G317 Micromonas commoda HOM05D004566 ORTHO05D006041 7.7e-55 218.4 333 36.3
Cre07.g333950 Chlamydomonas reinhardtii HOM05D004566 ORTHO05D006041 4.8e-49 199.1 336 34.8
BolC2t09452H Brassica oleracea HOM05D004566 ORTHO05D006041 1.6e-47 194.1 125 81.6
BraA07t30435Z Brassica rapa HOM05D004566 ORTHO05D040413 2.5e-45 186.8 207 54.6
QL09p046766 Quercus lobata HOM05D004566 ORTHO05D006041 2.1e-44 183.7 117 81.2
Cpa.g.sc49.57 Carica papaya HOM05D004566 ORTHO05D006041 4.7e-44 182.6 144 67.4
Cpa.g.sc49.56 Carica papaya HOM05D004566 ORTHO05D006041 2.8e-41 173.3 125 71.2
AagrBONN_evm.TU.Sc2ySwM_344.3227 Anthoceros agrestis HOM05D004566 ORTHO05D006041 4.1e-40 169.5 157 57.3
BraA07t30433Z Brassica rapa HOM05D004566 ORTHO05D006041 1.3e-33 147.9 365 35.9
BcaC07g36896 Brassica carinata HOM05D004566 ORTHO05D000925 1.4e-32 144.4 153 56.9
BcaC09g49927 Brassica carinata HOM05D000400 ORTHO05D000575 1.6e-31 141.0 150 57.3
SEGI_33438 Sequoiadendron giganteum HOM05D004566 ORTHO05D006041 4.7e-28 129.4 91 67.0
MD10G1016100 Malus domestica HOM05D004566 ORTHO05D006041 1.2e-26 124.8 65 90.8
C06p30980 Brassica napus HOM05D004566 ORTHO05D040413 7.5e-26 122.1 115 60.9
Cpa.g.sc49.59 Carica papaya HOM05D004566 ORTHO05D006041 9.8e-26 121.7 65 87.7
C06p31120 Brassica napus HOM05D004566 ORTHO05D006041 1.8e-24 117.5 59 98.3
BolC2t09460H Brassica oleracea HOM05D004566 ORTHO05D006041 1.2e-20 104.8 53 96.2
C06p30970 Brassica napus HOM05D004566 ORTHO05D006041 1.6e-20 104.4 166 45.2
unitig_52.g17536 Utricularia gibba HOM05D004566 ORTHO05D006041 2.2e-17 94.0 59 74.6
MD10G1016000 Malus domestica HOM05D004566 ORTHO05D006041 3.2e-16 90.1 74 67.6
GSVIVG01024226001 Vitis vinifera HOM05D004566 ORTHO05D042364 2.0e-15 87.4 72 63.9
BraA07t30434Z Brassica rapa HOM05D004566 ORTHO05D006041 1.0e-14 85.1 42 97.6
COL.COLO4_38312 Corchorus olitorius HOM05D004566 ORTHO05D006041 8.6e-14 82.0 53 73.6
C06p31350 Brassica napus HOM05D004566 ORTHO05D042364 1.6e-12 77.8 52 82.7
CDE06G0844 Ceratophyllum demersum HOM05D004566 ORTHO05D006041 2.0e-10 70.9 35 88.6
BolC6t38255H Brassica oleracea HOM05D000671 ORTHO05D041904 5.0e-06 56.2 45 66.7


User provided reference genes

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