Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 1.2e-71 273.1 142 100.0
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 7.9e-71 270.4 142 99.3
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 7.9e-71 270.4 142 99.3
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 3.0e-70 268.5 142 98.6
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 3.0e-70 268.5 142 98.6
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 8.7e-70 266.9 142 97.9
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 8.7e-70 266.9 142 97.9
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 2.1e-68 262.3 142 97.9
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 4.8e-68 261.2 142 97.2
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 4.8e-68 261.2 142 97.2
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 4.8e-68 261.2 142 97.2
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 6.2e-68 260.8 142 97.2
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 6.2e-68 260.8 142 97.2
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 6.2e-68 260.8 142 95.1
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 6.2e-68 260.8 142 95.1
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 4.5e-66 254.6 142 94.4
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 5.8e-66 254.2 142 94.4
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 1.7e-65 252.7 142 94.4
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 1.7e-65 252.7 142 94.4
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 1.7e-65 252.7 142 94.4
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 1.7e-65 252.7 142 94.4
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 1.7e-65 252.7 142 94.4
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 3.8e-65 251.5 142 93.7
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 1.1e-64 250.0 142 90.8
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 3.9e-62 241.5 134 94.0
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 9.3e-56 220.3 142 82.4
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 9.3e-56 220.3 142 82.4
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.2e-55 219.9 142 81.7
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 7.9e-55 217.2 142 78.9
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.8e-54 216.1 142 77.5
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 2.3e-54 215.7 142 82.4
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 3.0e-54 215.3 142 78.2
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 3.0e-54 215.3 142 78.2
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 6.7e-54 214.2 143 76.9
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 1.1e-53 213.4 142 79.6
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 1.5e-53 213.0 142 79.6
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.5e-53 212.2 140 80.0
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 2.5e-53 212.2 140 80.0
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 4.3e-53 211.5 142 81.0
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 5.7e-53 211.1 142 78.2
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 7.4e-53 210.7 143 79.0
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 7.4e-53 210.7 143 76.2
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 9.7e-53 210.3 140 75.7
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 9.7e-53 210.3 142 78.2
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 1.3e-52 209.9 142 80.3
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 1.3e-52 209.9 142 79.6
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.6e-52 209.5 140 77.1
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 2.8e-52 208.8 142 80.3
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 3.7e-52 208.4 142 79.6
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 4.8e-52 208.0 142 78.2
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 4.8e-52 208.0 142 77.5
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 6.3e-52 207.6 142 73.2
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.1e-51 206.8 140 77.9
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 1.4e-51 206.5 140 75.0
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 1.4e-51 206.5 142 78.2
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 3.1e-51 205.3 137 78.1
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 3.1e-51 205.3 142 76.1
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 4.1e-51 204.9 142 77.5
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 4.1e-51 204.9 142 77.5
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 4.1e-51 204.9 143 76.2
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 5.3e-51 204.5 142 78.2
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 6.9e-51 204.1 142 76.1
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.5e-50 203.0 142 73.9
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 2.0e-50 202.6 143 76.2
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 2.0e-50 202.6 140 74.3
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 2.6e-50 202.2 142 73.9
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 3.4e-50 201.8 140 72.1
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 4.5e-50 201.4 142 74.6
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 5.9e-50 201.1 139 73.4
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 5.9e-50 201.1 142 74.6
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 7.7e-50 200.7 142 76.1
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 7.7e-50 200.7 140 74.3
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 1.3e-49 199.9 140 77.1
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.3e-49 199.9 142 72.5
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 1.3e-49 199.9 142 76.8
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.7e-49 199.5 142 72.5
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 2.2e-49 199.1 140 75.0
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 2.9e-49 198.7 142 75.4
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 2.9e-49 198.7 143 74.8
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 2.9e-49 198.7 142 75.4
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 6.5e-49 197.6 142 75.4
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 8.5e-49 197.2 142 74.6
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 8.5e-49 197.2 141 73.8
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.9e-48 196.1 142 75.4
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 2.5e-48 195.7 142 75.4
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 3.2e-48 195.3 142 73.2
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 3.2e-48 195.3 137 75.9
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 5.5e-48 194.5 140 71.4
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 7.2e-48 194.1 144 74.3
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 9.4e-48 193.7 142 74.6
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 9.4e-48 193.7 141 73.0
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 1.2e-47 193.4 136 74.3
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 1.6e-47 193.0 142 71.8
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 2.7e-47 192.2 143 72.7
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 3.6e-47 191.8 142 72.5
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 4.6e-47 191.4 142 71.1
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 4.6e-47 191.4 142 73.9
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 4.6e-47 191.4 142 71.1
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 6.1e-47 191.0 146 74.0
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 6.1e-47 191.0 142 71.8
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.0e-46 190.3 158 70.9
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.0e-46 190.3 143 72.7
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 1.8e-46 189.5 144 71.5
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 2.3e-46 189.1 143 73.4
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 2.3e-46 189.1 142 73.2
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 2.3e-46 189.1 140 74.3
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 3.0e-46 188.7 142 72.5
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 3.0e-46 188.7 140 72.1
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 3.0e-46 188.7 140 72.1
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.9e-46 188.3 140 72.1
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 1.1e-45 186.8 145 68.3
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 2.0e-45 186.0 142 72.5
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 2.6e-45 185.7 139 71.9
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 3.3e-45 185.3 140 70.7
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 3.3e-45 185.3 140 71.4
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 4.4e-45 184.9 145 70.3
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.8e-44 182.2 138 68.1
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 4.8e-44 181.4 141 68.1
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 4.8e-44 181.4 138 68.8
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 6.3e-44 181.0 140 69.3
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 8.2e-44 180.6 143 68.5
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.4e-43 179.9 136 72.1
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 5.3e-43 177.9 142 70.4
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 1.2e-42 176.8 143 67.8
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 4.5e-42 174.9 142 68.3
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 2.2e-41 172.6 143 67.8
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.9e-41 172.2 142 66.9
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 3.8e-41 171.8 144 66.7
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 3.8e-41 171.8 144 66.7
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 1.4e-40 169.9 143 68.5
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 7.2e-40 167.5 143 66.4
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.6e-39 166.4 140 63.6
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 3.6e-39 165.2 143 64.3
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.4e-38 163.3 138 64.5
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 9.7e-37 157.1 140 64.3
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 1.7e-36 156.4 160 58.8
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 6.3e-36 154.5 143 61.5
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 6.3e-36 154.5 156 59.6
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.1e-35 153.7 112 71.4
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 2.4e-35 152.5 141 61.0
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 3.1e-35 152.1 91 83.5
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 1.3e-33 146.7 111 68.5
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 3.8e-33 145.2 141 58.2
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 1.2e-31 140.2 121 58.7
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.7e-31 139.0 115 67.8
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 3.6e-31 138.7 120 57.5
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 4.7e-31 138.3 144 57.6
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 2.3e-30 136.0 92 82.6
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 3.0e-30 135.6 146 54.8
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 4.4e-29 131.7 141 53.2
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.2e-28 129.4 118 57.6
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.2e-28 129.4 142 52.8
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 4.8e-28 128.3 92 71.7
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 4.8e-28 128.3 119 58.0
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.8e-27 126.3 142 54.2
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.3e-27 124.8 142 50.0
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.3e-27 124.8 139 53.2
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 6.1e-23 111.3 92 65.2
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 2.3e-22 109.4 114 50.0
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 5.4e-19 98.2 67 67.2
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 2.7e-18 95.9 142 45.8
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 5.9e-18 94.7 135 45.9
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 7.7e-18 94.4 53 83.0
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 2.5e-16 89.4 82 63.4
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 4.4e-13 78.6 88 58.0
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 2.3e-06 56.2 136 37.5


User provided reference genes

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