Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 2.3e-122 442.2 213 100.0
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 9.9e-118 426.8 214 97.2
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 4.6e-115 417.9 214 95.8
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 1.3e-98 363.2 193 89.6
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 7.3e-97 357.5 193 88.1
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 2.8e-96 355.5 197 85.8
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 4.8e-96 354.8 193 87.6
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 6.2e-96 354.4 193 87.0
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 6.2e-96 354.4 194 86.6
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 1.1e-95 353.6 197 86.8
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 1.1e-95 353.6 193 87.6
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 1.1e-95 353.6 193 87.6
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 1.8e-95 352.8 193 86.5
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 9.0e-95 350.5 193 86.0
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 1.5e-94 349.7 193 86.0
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 2.9e-93 345.5 193 83.9
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 2.4e-92 342.4 193 87.0
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 7.1e-92 340.9 193 86.5
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 1.8e-90 336.3 193 86.0
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 1.8e-90 336.3 193 86.0
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 5.8e-86 321.2 193 79.3
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 1.8e-74 283.1 154 90.9
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.3e-72 274.6 193 64.8
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 6.3e-72 274.6 193 64.8
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 8.2e-72 274.2 196 64.8
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 3.1e-71 272.3 193 65.3
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 4.1e-71 271.9 193 63.2
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.0e-69 267.3 194 64.4
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.0e-69 267.3 193 64.2
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.0e-69 267.3 193 64.2
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 2.9e-69 265.8 193 64.8
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.9e-69 265.8 193 64.2
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 5.0e-69 265.0 193 63.2
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 8.8e-66 254.2 193 61.7
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 1.5e-65 253.4 194 63.9
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 2.2e-64 249.6 194 61.3
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 6.3e-64 248.1 193 61.1
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 6.3e-64 248.1 194 61.3
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 6.3e-64 248.1 194 61.9
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 1.1e-63 247.3 194 61.9
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 2.4e-63 246.1 194 60.3
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 5.3e-63 245.0 194 61.3
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 6.9e-63 244.6 193 60.1
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 6.9e-63 244.6 194 61.3
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 1.2e-62 243.8 194 59.8
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 1.2e-62 243.8 194 60.8
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.2e-62 243.8 194 59.8
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 2.0e-62 243.0 194 59.8
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 2.6e-62 242.7 194 59.3
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 3.4e-62 242.3 193 60.6
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 1.0e-61 240.7 194 61.3
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 1.3e-61 240.4 177 63.3
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 1.3e-61 240.4 194 60.3
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 1.3e-61 240.4 192 60.4
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.7e-61 240.0 194 59.3
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 2.2e-61 239.6 258 48.1
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 3.8e-61 238.8 194 58.2
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 6.5e-61 238.0 194 58.2
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 1.1e-60 237.3 194 59.3
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 2.5e-60 236.1 194 58.8
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 3.2e-60 235.7 194 57.7
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 3.2e-60 235.7 194 58.8
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 9.4e-60 234.2 194 56.7
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 9.4e-60 234.2 194 57.2
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 4.7e-59 231.9 194 56.7
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 2.6e-57 226.1 193 53.4
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 3.3e-57 225.7 193 53.4
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 5.7e-57 224.9 194 57.7
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 9.7e-57 224.2 193 56.0
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 1.8e-55 219.9 193 54.9
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 3.1e-55 219.2 193 53.9
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 4.1e-55 218.8 192 54.2
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 9.1e-55 217.6 191 55.0
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.6e-54 216.9 193 52.3
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 3.5e-54 215.7 192 53.6
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 7.7e-54 214.5 192 53.6
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 1.0e-53 214.2 112 93.8
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 1.0e-53 214.2 193 52.8
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 1.7e-53 213.4 193 52.8
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 1.9e-52 209.9 146 66.4
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 2.5e-52 209.5 192 54.7
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 4.2e-52 208.8 193 48.7
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 5.5e-52 208.4 193 52.8
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 7.2e-52 208.0 192 54.7
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 7.2e-52 208.0 195 53.3
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 9.4e-52 207.6 193 53.9
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 4.7e-51 205.3 193 51.8
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 4.7e-51 205.3 193 50.8
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 4.7e-51 205.3 193 50.8
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 8.0e-51 204.5 192 54.2
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 5.2e-50 201.8 193 50.3
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 1.1e-49 200.7 192 51.6
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 2.0e-49 199.9 195 50.3
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 5.7e-49 198.4 193 46.6
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 1.3e-48 197.2 220 48.6
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 2.8e-48 196.1 151 60.9
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 4.8e-48 195.3 193 47.7
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 6.3e-48 194.9 193 53.4
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 1.4e-47 193.7 243 43.2
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 7.0e-47 191.4 226 45.6
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 2.7e-46 189.5 225 44.4
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 4.5e-46 188.7 220 44.5
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 1.3e-45 187.2 207 47.3
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 1.3e-45 187.2 166 51.8
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 1.7e-45 186.8 233 43.8
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 3.8e-45 185.7 147 61.2
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 9.4e-44 181.0 226 43.8
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 1.2e-43 180.6 219 43.8
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 1.2e-43 180.6 220 42.7
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 2.1e-43 179.9 166 50.0
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 1.0e-42 177.6 226 43.4
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 2.3e-42 176.4 137 61.3
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 6.8e-42 174.9 193 40.4
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 8.8e-42 174.5 147 56.5
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 1.5e-41 173.7 226 41.6
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 2.6e-41 172.9 226 41.6
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 2.6e-41 172.9 226 42.0
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 1.1e-39 167.5 210 43.3
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 5.4e-39 165.2 194 48.5
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 1.6e-38 163.7 246 40.7
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 2.0e-38 163.3 194 38.7
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 3.5e-38 162.5 146 52.1
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 5.5e-36 155.2 200 44.0
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 4.7e-35 152.1 114 60.5
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 1.2e-33 147.5 194 38.1
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 1.2e-33 147.5 194 38.1
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 4.9e-32 142.1 193 39.4
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 6.3e-32 141.7 194 42.8
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.1e-31 139.4 107 58.9
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 4.1e-31 139.0 143 49.7
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.2e-30 137.5 122 51.6
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 1.0e-29 134.4 143 43.4
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.3e-29 134.0 86 69.8
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.7e-29 133.7 193 38.3
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 2.9e-29 132.9 199 37.2
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 3.8e-29 132.5 169 45.0
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.1e-28 131.0 191 35.1
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 2.8e-27 126.3 176 40.3
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 6.1e-27 125.2 197 34.5
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 1.8e-26 123.6 193 32.6
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 3.0e-26 122.9 115 55.7
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 1.2e-25 120.9 111 49.5
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 1.2e-25 120.9 135 46.7
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 5.7e-25 118.6 152 42.8
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.7e-22 109.8 193 33.7
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 1.1e-20 104.4 73 67.1
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 2.3e-18 96.7 194 36.6
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 4.0e-18 95.9 117 41.0
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 9.8e-17 91.3 130 40.8
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 2.3e-13 80.1 201 28.4
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 5.2e-10 68.9 202 23.3
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 4.4e-09 65.9 70 45.7
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 7.1e-07 58.5 204 27.5
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 9.2e-07 58.2 52 48.1
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.2e-06 57.8 49 53.1
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.2e-06 57.8 51 51.0


User provided reference genes

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