Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 1.5e-52 209.1 101 100.0
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 1.5e-52 209.1 101 100.0
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 2.9e-51 204.9 101 98.0
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 1.5e-31 139.4 74 90.5
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 2.5e-31 138.7 74 89.2
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 3.3e-31 138.3 74 89.2
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 3.3e-31 138.3 74 89.2
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 3.3e-31 138.3 74 89.2
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 3.3e-31 138.3 74 89.2
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 5.7e-31 137.5 74 87.8
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 7.4e-31 137.1 74 87.8
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 9.7e-31 136.7 74 87.8
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.3e-30 136.3 74 86.5
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.3e-30 136.3 74 87.8
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 2.2e-30 135.6 74 86.5
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 4.8e-30 134.4 74 85.1
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 6.3e-30 134.0 74 85.1
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 5.3e-29 131.0 74 83.8
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 4.5e-28 127.9 74 81.1
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 1.3e-27 126.3 74 78.4
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 6.5e-27 124.0 74 78.4
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.1e-26 123.2 74 79.7
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.1e-25 119.0 64 87.5
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.4e-24 116.3 74 73.0
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 1.8e-24 115.9 74 71.6
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 1.8e-24 115.9 74 71.6
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 2.3e-24 115.5 74 71.6
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 2.3e-24 115.5 74 74.3
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 5.1e-24 114.4 74 73.0
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 6.7e-24 114.0 74 75.7
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 8.8e-24 113.6 74 67.6
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 8.8e-24 113.6 74 73.0
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 1.1e-23 113.2 74 68.9
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 1.5e-23 112.8 74 71.6
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 2.0e-23 112.5 74 67.6
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 2.0e-23 112.5 74 73.0
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 2.5e-23 112.1 74 70.3
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 4.3e-23 111.3 74 70.3
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 5.7e-23 110.9 74 71.6
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 7.4e-23 110.5 74 70.3
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 7.4e-23 110.5 74 68.9
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 7.4e-23 110.5 74 68.9
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 7.4e-23 110.5 74 68.9
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 9.7e-23 110.2 74 70.3
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 1.3e-22 109.8 74 70.3
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 1.3e-22 109.8 74 68.9
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 1.7e-22 109.4 74 68.9
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 1.7e-22 109.4 74 71.6
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 1.7e-22 109.4 74 66.2
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 2.2e-22 109.0 74 66.2
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 2.2e-22 109.0 74 71.6
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 2.2e-22 109.0 74 71.6
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 2.8e-22 108.6 74 67.6
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 2.8e-22 108.6 74 68.9
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 3.7e-22 108.2 74 70.3
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 3.7e-22 108.2 74 66.2
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 3.7e-22 108.2 74 70.3
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 4.8e-22 107.8 74 68.9
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 4.8e-22 107.8 74 67.6
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 4.8e-22 107.8 74 64.9
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 4.8e-22 107.8 74 66.2
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 4.8e-22 107.8 74 67.6
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 6.3e-22 107.5 74 70.3
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 6.3e-22 107.5 74 68.9
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 6.3e-22 107.5 74 66.2
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 6.3e-22 107.5 74 67.6
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 8.2e-22 107.1 66 75.8
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 8.2e-22 107.1 74 67.6
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 8.2e-22 107.1 74 66.2
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 1.1e-21 106.7 74 64.9
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.4e-21 106.3 74 63.5
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 1.4e-21 106.3 74 63.5
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.8e-21 105.9 74 66.2
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 1.8e-21 105.9 74 70.3
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 1.8e-21 105.9 74 66.2
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 1.8e-21 105.9 74 66.2
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 2.4e-21 105.5 74 66.2
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 2.4e-21 105.5 74 66.2
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.4e-21 105.5 74 66.2
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 2.4e-21 105.5 74 64.9
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 2.4e-21 105.5 74 67.6
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 2.4e-21 105.5 74 66.2
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 2.4e-21 105.5 74 67.6
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 3.1e-21 105.1 74 64.9
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 3.1e-21 105.1 74 66.2
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 4.1e-21 104.8 74 64.9
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.1e-21 104.8 74 64.9
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.1e-21 104.8 74 64.9
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 4.1e-21 104.8 74 66.2
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 4.1e-21 104.8 74 66.2
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 4.1e-21 104.8 74 68.9
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 5.3e-21 104.4 74 62.2
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 5.3e-21 104.4 74 68.9
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 6.9e-21 104.0 74 67.6
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 6.9e-21 104.0 74 66.2
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 6.9e-21 104.0 74 63.5
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 9.1e-21 103.6 75 68.0
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 9.1e-21 103.6 75 64.0
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 1.2e-20 103.2 74 64.9
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 1.5e-20 102.8 74 64.9
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 2.0e-20 102.4 74 64.9
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 3.4e-20 101.7 73 65.8
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 3.4e-20 101.7 75 62.7
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 5.9e-20 100.9 74 63.5
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 5.9e-20 100.9 77 62.3
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 7.7e-20 100.5 77 61.0
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 7.7e-20 100.5 75 64.0
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 7.7e-20 100.5 74 63.5
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 1.3e-19 99.8 74 63.5
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 1.3e-19 99.8 74 64.9
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 1.3e-19 99.8 74 64.9
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.2e-19 99.0 74 64.9
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 2.2e-19 99.0 76 65.8
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 2.2e-19 99.0 73 63.0
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 2.9e-19 98.6 76 63.2
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 2.9e-19 98.6 76 63.2
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 3.8e-19 98.2 77 61.0
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 8.5e-19 97.1 74 58.1
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 8.5e-19 97.1 74 59.5
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 8.5e-19 97.1 74 60.8
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 1.1e-18 96.7 76 60.5
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 1.4e-18 96.3 74 59.5
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 1.9e-18 95.9 66 72.7
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.5e-18 95.5 74 64.9
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 2.5e-18 95.5 74 56.8
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 3.2e-18 95.1 77 59.7
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 3.2e-18 95.1 77 59.7
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 6.1e-17 90.9 74 60.8
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 1.8e-16 89.4 77 58.4
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.5e-15 86.3 74 55.4
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.5e-15 86.3 74 55.4
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 1.2e-12 76.6 93 48.4
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 5.9e-12 74.3 90 48.9
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 1.3e-11 73.2 47 72.3
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 2.2e-11 72.4 90 46.7
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 8.2e-06 53.9 51 41.2


User provided reference genes

Program Settings