Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45066 Brassica carinata HOM05D002668 ORTHO05D020115 3.0e-28 127.9 67 100.0
BolC9t54090H Brassica oleracea HOM05D002668 ORTHO05D020115 3.0e-28 127.9 67 100.0
BolC3t18094H Brassica oleracea HOM05D002668 ORTHO05D020115 1.5e-27 125.6 67 98.5
C06p26760 Brassica napus HOM05D002668 ORTHO05D020115 3.3e-27 124.4 67 98.5
BolC6t37851H Brassica oleracea HOM05D002668 ORTHO05D020115 3.3e-27 124.4 67 98.5
BcaC03g13471 Brassica carinata HOM05D002668 ORTHO05D003295 5.6e-19 97.1 48 100.0
A02p02600 Brassica napus HOM05D002668 ORTHO05D003295 5.6e-19 97.1 48 100.0
C02p07080 Brassica napus HOM05D002668 ORTHO05D003295 5.6e-19 97.1 48 100.0
BolC2t06641H Brassica oleracea HOM05D002668 ORTHO05D003295 5.6e-19 97.1 48 100.0
BraA02t05228Z Brassica rapa HOM05D002668 ORTHO05D003295 5.6e-19 97.1 48 100.0
BcaNung03148 Brassica carinata HOM05D002668 ORTHO05D003295 2.1e-18 95.1 48 97.9
Thhalv10014091m.g Eutrema salsugineum HOM05D002668 ORTHO05D003295 4.8e-18 94.0 48 95.8
Sp6g29480 Schrenkiella parvula HOM05D002668 ORTHO05D003295 4.8e-18 94.0 48 95.8
AT5G14530 Arabidopsis thaliana HOM05D002668 ORTHO05D003295 1.8e-17 92.0 48 93.8
Carub.0006s1271 Capsella rubella HOM05D002668 ORTHO05D003295 1.8e-17 92.0 48 93.8
AL6G25280 Arabidopsis lyrata HOM05D002668 ORTHO05D003295 2.4e-17 91.7 48 93.8
THA.LOC104822400 Tarenaya hassleriana HOM05D002668 ORTHO05D003295 9.0e-17 89.7 48 91.7
Aa31LG11G15300 Aethionema arabicum HOM05D002668 ORTHO05D003295 2.6e-16 88.2 48 89.6
Potri.017G071900 Populus trichocarpa HOM05D002668 ORTHO05D003295 1.9e-14 82.0 48 83.3
TAR622G0975 Trochodendron aralioides HOM05D002668 ORTHO05D003295 1.9e-14 82.0 48 83.3
Gohir.A10G102600 Gossypium hirsutum HOM05D002668 ORTHO05D003295 2.4e-14 81.6 48 81.2
Gohir.D10G086800 Gossypium hirsutum HOM05D002668 ORTHO05D003295 2.4e-14 81.6 48 81.2
Gorai.011G095000 Gossypium raimondii HOM05D002668 ORTHO05D003295 2.4e-14 81.6 48 81.2
TWI56G0497 Tripterygium wilfordii HOM05D002668 ORTHO05D003295 3.2e-14 81.3 48 81.2
COL.COLO4_29099 Corchorus olitorius HOM05D002668 ORTHO05D003295 4.2e-14 80.9 47 80.9
Manes.17G112900 Manihot esculenta HOM05D002668 ORTHO05D003295 7.1e-14 80.1 47 83.0
Phvul.008G144400 Phaseolus vulgaris HOM05D002668 ORTHO05D003295 7.1e-14 80.1 47 80.9
Duzib147G1250 Durio zibethinus HOM05D002668 ORTHO05D003295 1.2e-13 79.3 48 77.1
MD09G1028100 Malus domestica HOM05D002668 ORTHO05D003295 1.6e-13 79.0 47 80.9
Aqoxy3G01155 Aquilegia oxysepala HOM05D002668 ORTHO05D003295 2.1e-13 78.6 48 75.0
GSVIVG01032417001 Vitis vinifera HOM05D002668 ORTHO05D003295 2.1e-13 78.6 48 79.2
AUR62034493 Chenopodium quinoa HOM05D002668 ORTHO05D003295 2.7e-13 78.2 48 75.0
FvH4_6g51320 Fragaria vesca HOM05D002668 ORTHO05D003295 2.7e-13 78.2 47 80.9
FAN05G4386 Fragaria x ananassa HOM05D002668 ORTHO05D003295 2.7e-13 78.2 47 80.9
FAN09G3109 Fragaria x ananassa HOM05D002668 ORTHO05D003295 2.7e-13 78.2 47 80.9
FAN14G0265 Fragaria x ananassa HOM05D002668 ORTHO05D003295 2.7e-13 78.2 47 80.9
Lj1g0015456 Lotus japonicus HOM05D002668 ORTHO05D003295 2.7e-13 78.2 47 76.6
VMungo1383G2954 Vigna mungo HOM05D002668 ORTHO05D003295 2.7e-13 78.2 47 78.7
Potri.001G345900 Populus trichocarpa HOM05D002668 ORTHO05D003295 3.5e-13 77.8 47 76.6
Thecc.04G016000 Theobroma cacao HOM05D002668 ORTHO05D003295 3.5e-13 77.8 48 77.1
AUR62035476 Chenopodium quinoa HOM05D002668 ORTHO05D003295 4.6e-13 77.4 48 72.9
RcHm_v2.0_Chr2g0172941 Rosa chinensis HOM05D002668 ORTHO05D003295 4.6e-13 77.4 47 78.7
Atru.chr6.2283 Acer truncatum HOM05D002668 ORTHO05D003295 6.0e-13 77.0 48 77.1
Cfa007377 Carpinus fangiana HOM05D002668 ORTHO05D003295 6.0e-13 77.0 48 77.1
Haze_14731 Corylus avellana HOM05D002668 ORTHO05D003295 6.0e-13 77.0 48 77.1
PSO017G1194 Papaver somniferum HOM05D002668 ORTHO05D003295 6.0e-13 77.0 47 76.6
Psat3g163200 Pisum sativum HOM05D002668 ORTHO05D003295 7.9e-13 76.6 47 76.6
Glyma.16G071900 Glycine max HOM05D002668 ORTHO05D003295 1.0e-12 76.3 47 78.7
Lalb_Chr14g0362731 Lupinus albus HOM05D002668 ORTHO05D003295 1.0e-12 76.3 48 77.1
SGA_v2.0_scaffold224G42983 Striga asiatica HOM05D002668 ORTHO05D003295 1.8e-12 75.5 47 74.5
arahy.Tifrunner.gnm1.ann1.GU90BI Arachis hypogaea HOM05D002668 ORTHO05D003295 2.3e-12 75.1 46 78.3
CiPaw.03G042700 Carya illinoinensis HOM05D002668 ORTHO05D003295 2.3e-12 75.1 48 75.0
ClCG10G013950 Citrullus lanatus HOM05D002668 ORTHO05D003295 2.3e-12 75.1 48 75.0
MELO3C009987.2 Cucumis melo HOM05D002668 ORTHO05D003295 2.3e-12 75.1 48 75.0
CsaV3_3G042740 Cucumis sativus L. HOM05D002668 ORTHO05D003295 2.3e-12 75.1 48 75.0
CANSAT64G0004 Cannabis sativa HOM05D002668 ORTHO05D003295 3.9e-12 74.3 47 72.3
Dinv35102 Davidia involucrata HOM05D002668 ORTHO05D003295 3.9e-12 74.3 47 76.6
Hma1.2p1_1291F.1_g273510 Hydrangea macrophylla HOM05D002668 ORTHO05D003295 3.9e-12 74.3 47 76.6
MBI10_g39275_MAGBIO Magnolia biondii HOM05D002668 ORTHO05D003295 3.9e-12 74.3 48 70.8
Prupe.3G290600 Prunus persica HOM05D002668 ORTHO05D003295 3.9e-12 74.3 46 76.1
Ca_08361_v3 Cicer arietinum L. HOM05D002668 ORTHO05D003295 5.1e-12 73.9 47 74.5
Oeu048624.1 Olea europaea HOM05D002668 ORTHO05D003295 6.7e-12 73.6 47 72.3
Nn3g16754 Nelumbo nucifera HOM05D002668 ORTHO05D003295 8.7e-12 73.2 48 72.9
QL02p074872 Quercus lobata HOM05D002668 ORTHO05D003295 8.7e-12 73.2 47 74.5
Sed0003940 Sechium edule HOM05D002668 ORTHO05D003295 8.7e-12 73.2 54 70.4
Ciclev10015851m.g Citrus clementina HOM05D002668 ORTHO05D003295 1.1e-11 72.8 47 72.3
Cc07_g01790 Coffea canephora HOM05D002668 ORTHO05D003295 1.1e-11 72.8 47 74.5
Migut.K01391 Erythranthe guttata HOM05D002668 ORTHO05D003295 1.1e-11 72.8 47 70.2
Medtr6g007797 Medicago truncatula HOM05D002668 ORTHO05D003295 1.1e-11 72.8 47 72.3
Actinidia36111 Actinidia chinensis HOM05D002668 ORTHO05D003295 1.5e-11 72.4 47 74.5
TPR.G265 Trifolium pratense HOM05D002668 ORTHO05D020115 1.5e-11 72.4 47 72.3
HPP92_023132 Vanilla planifolia HOM05D002668 ORTHO05D003295 1.5e-11 72.4 48 68.8
ATR0585G146 Amborella trichopoda HOM05D002668 ORTHO05D003295 1.9e-11 72.0 46 71.7
CSS0029758 Camellia sinensis var. sinensis HOM05D002668 ORTHO05D003295 1.9e-11 72.0 47 72.3
CDE06G0738 Ceratophyllum demersum HOM05D002668 ORTHO05D003295 1.9e-11 72.0 48 68.8
Lj7A598T51 Lonicera japonica HOM05D002668 ORTHO05D003295 1.9e-11 72.0 47 74.5
Os05g0543300 Oryza sativa ssp. japonica HOM05D002668 ORTHO05D003295 1.9e-11 72.0 47 68.1
Rhsim10G0018000 Rhododendron simsii HOM05D002668 ORTHO05D003295 1.9e-11 72.0 47 74.5
Solyc12g035360.2 Solanum lycopersicum HOM05D002668 ORTHO05D003295 1.9e-11 72.0 48 64.6
PGR083G1667 Punica granatum HOM05D002668 ORTHO05D003295 2.5e-11 71.6 46 69.6
Sopen12g015070 Solanum pennellii HOM05D002668 ORTHO05D003295 5.6e-11 70.5 48 62.5
HanXRQChr09g0255121 Helianthus annuus HOM05D002668 ORTHO05D003295 9.6e-11 69.7 47 66.0
Lsat_1_v5_gn_4_183381 Lactuca sativa HOM05D002668 ORTHO05D003295 9.6e-11 69.7 47 66.0
Zm00001eb294550 Zea mays HOM05D002668 ORTHO05D003295 1.6e-10 68.9 47 66.0
Nitab4.5_0000419g0100 Nicotiana tabacum HOM05D002668 ORTHO05D003295 2.8e-10 68.2 47 61.7
Nitab4.5_0002385g0020 Nicotiana tabacum HOM05D002668 ORTHO05D003295 2.8e-10 68.2 47 61.7
vmacro05859 Vaccinium macrocarpon HOM05D002668 ORTHO05D003295 2.8e-10 68.2 46 71.7
Eucgr.J02235 Eucalyptus grandis HOM05D002668 ORTHO05D003295 4.8e-10 67.4 47 63.8
unitig_88.g27778 Utricularia gibba HOM05D001104 ORTHO05D006285 4.8e-10 67.4 47 66.0
Zm00001eb342540 Zea mays HOM05D002668 ORTHO05D003295 8.2e-10 66.6 47 61.7
ECA232G4013 Erigeron canadensis HOM05D002668 ORTHO05D003295 1.1e-09 66.2 47 61.7
DCAR_015059 Daucus carota HOM05D002668 ORTHO05D003295 3.1e-09 64.7 48 62.5
CBR_g30894 Chara braunii HOM05D002668 ORTHO05D003295 9.0e-09 63.2 44 61.4
Pp3c19_4130 Physcomitrium patens HOM05D002668 ORTHO05D003295 1.5e-08 62.4 44 59.1
Pp3c21_4780 Physcomitrium patens HOM05D002668 ORTHO05D003295 2.6e-08 61.6 50 52.0
Mapoly0109s0026 Marchantia polymorpha HOM05D002668 ORTHO05D003295 7.6e-08 60.1 50 54.0
PSO478G0575 Papaver somniferum HOM05D002668 ORTHO05D003295 1.3e-07 59.3 35 77.1
SMO171G0024 Selaginella moellendorffii HOM05D002668 ORTHO05D003295 1.7e-07 58.9 50 54.0
AagrBONN_evm.TU.Sc2ySwM_344.3695 Anthoceros agrestis HOM05D002668 ORTHO05D003295 4.9e-07 57.4 44 56.8
Hund06772 Selenicereus undatus HOM05D002668 ORTHO05D003295 3.2e-06 54.7 35 65.7
Gohir.A02G170300 Gossypium hirsutum HOM05D002668 ORTHO05D003295 7.1e-06 53.5 44 52.3
Gohir.D03G009700 Gossypium hirsutum HOM05D002668 ORTHO05D003295 7.1e-06 53.5 44 52.3
Gorai.003G010000 Gossypium raimondii HOM05D002668 ORTHO05D003295 7.1e-06 53.5 44 52.3
CDE08G1675 Ceratophyllum demersum HOM05D002668 ORTHO05D003295 9.3e-06 53.1 44 47.7
COL.COLO4_21915 Corchorus olitorius HOM05D002668 ORTHO05D003295 9.3e-06 53.1 44 50.0


User provided reference genes

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