Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 2.9e-128 461.8 226 100.0
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 2.9e-128 461.8 226 100.0
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 2.9e-128 461.8 226 100.0
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 6.5e-128 460.7 226 99.6
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 6.5e-128 460.7 226 99.6
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 1.9e-127 459.1 226 99.1
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 3.0e-125 451.8 226 96.5
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 6.3e-123 444.1 226 94.7
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 9.1e-122 440.3 226 95.1
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 1.2e-121 439.9 226 93.8
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 3.5e-121 438.3 226 93.8
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 5.5e-119 431.0 226 91.6
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 7.2e-119 430.6 226 92.5
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 4.0e-117 424.9 226 94.2
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 3.2e-106 388.7 226 79.6
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 4.6e-105 384.8 222 80.6
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 1.2e-102 376.7 225 78.2
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 2.3e-101 372.5 224 78.6
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 1.5e-100 369.8 226 77.4
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 2.2e-99 365.9 226 76.5
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 4.9e-99 364.8 226 76.1
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 4.9e-99 364.8 226 76.1
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 6.4e-99 364.4 226 75.7
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 1.4e-98 363.2 222 75.7
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 2.4e-98 362.5 221 75.6
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 4.1e-98 361.7 222 76.1
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 2.1e-97 359.4 226 73.9
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 6.0e-97 357.8 226 73.0
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 7.8e-97 357.5 226 72.6
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 7.8e-97 357.5 226 75.2
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 5.1e-96 354.8 226 72.1
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 1.2e-94 350.1 225 73.8
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 1.2e-94 350.1 221 71.0
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 2.1e-94 349.4 221 75.6
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 2.8e-94 349.0 226 73.5
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 8.1e-94 347.4 222 71.2
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 1.8e-93 346.3 221 70.1
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 3.1e-93 345.5 226 70.8
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 5.2e-93 344.7 221 73.3
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 1.2e-92 343.6 222 70.7
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 1.2e-92 343.6 222 71.6
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 2.0e-92 342.8 226 73.0
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 2.6e-92 342.4 226 71.7
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 2.6e-92 342.4 222 70.7
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 2.6e-92 342.4 226 70.8
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 3.4e-92 342.0 221 69.7
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 4.4e-92 341.7 222 69.4
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 5.8e-92 341.3 221 71.9
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 1.3e-91 340.1 226 69.5
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 1.3e-91 340.1 222 70.7
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 2.2e-91 339.3 221 71.0
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 2.2e-91 339.3 226 72.1
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 2.9e-91 339.0 226 72.1
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 3.7e-91 338.6 225 72.0
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 3.7e-91 338.6 221 71.5
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 4.9e-91 338.2 221 71.5
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 6.4e-91 337.8 220 70.9
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 2.4e-90 335.9 222 70.7
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 3.2e-90 335.5 222 72.1
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 3.2e-90 335.5 221 71.0
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 4.1e-90 335.1 226 71.7
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 4.1e-90 335.1 222 69.8
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 4.1e-90 335.1 225 70.7
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 4.1e-90 335.1 221 71.5
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 5.4e-90 334.7 221 70.1
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 7.1e-90 334.3 221 69.2
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 9.2e-90 334.0 222 70.7
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 9.2e-90 334.0 221 70.6
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 1.2e-89 333.6 221 70.1
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 1.6e-89 333.2 222 69.8
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 3.5e-89 332.0 241 66.0
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 7.8e-89 330.9 222 69.4
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 1.7e-88 329.7 222 69.4
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 2.3e-88 329.3 220 68.6
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 2.3e-88 329.3 225 67.6
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 6.6e-88 327.8 220 68.2
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 8.6e-88 327.4 242 64.0
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 8.6e-88 327.4 220 68.2
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 1.5e-87 326.6 220 67.7
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 5.6e-87 324.7 229 68.6
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 9.6e-87 323.9 220 66.8
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 9.6e-87 323.9 221 68.8
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 1.2e-86 323.6 221 68.3
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 3.6e-86 322.0 222 67.6
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 1.4e-85 320.1 267 59.2
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 6.8e-85 317.8 222 68.0
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 1.5e-84 316.6 221 69.7
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 2.6e-84 315.8 220 66.8
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 7.6e-84 314.3 237 61.2
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 1.7e-83 313.2 226 61.5
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 3.2e-82 308.9 226 60.6
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 3.2e-82 308.9 187 76.5
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 5.4e-82 308.1 197 72.1
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 7.1e-82 307.8 252 59.5
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 1.0e-80 303.9 222 62.2
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 1.0e-80 303.9 223 65.0
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 8.7e-80 300.8 197 70.6
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 1.1e-79 300.4 292 53.8
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 1.1e-79 300.4 191 72.3
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 1.8e-77 293.1 222 61.3
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 5.8e-76 288.1 191 70.7
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 2.2e-75 286.2 216 59.7
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 7.1e-74 281.2 214 62.6
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 2.7e-73 279.3 213 60.6
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 3.5e-73 278.9 225 57.8
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 6.0e-73 278.1 220 60.9
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 1.7e-72 276.6 194 67.0
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 1.3e-70 270.4 214 59.3
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 6.2e-70 268.1 215 56.3
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 6.9e-69 264.6 165 74.5
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 6.9e-69 264.6 215 56.3
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 9.0e-69 264.2 254 52.0
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 2.2e-67 259.6 215 54.9
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 2.9e-67 259.2 224 54.9
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 6.4e-67 258.1 214 55.1
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 4.6e-65 251.9 211 54.5
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 1.8e-64 250.0 151 73.5
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 5.1e-64 248.4 216 55.6
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 2.1e-62 243.0 151 76.8
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 2.8e-62 242.7 217 53.5
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 2.2e-59 233.0 187 59.4
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 4.2e-58 228.8 222 56.3
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 1.0e-56 224.2 155 70.3
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 7.6e-52 208.0 182 53.8
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 6.1e-49 198.4 216 45.8
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 5.7e-47 191.8 126 66.7
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 4.8e-38 162.2 225 40.0
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 7.7e-36 154.8 164 45.1
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 3.8e-35 152.5 237 38.4
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 1.2e-33 147.5 98 73.5
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.4e-32 144.1 119 53.8
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 1.9e-26 123.6 102 53.9
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 1.4e-21 107.5 67 76.1
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 2.4e-21 106.7 82 58.5
A04p02350 Brassica napus HOM05D005636 ORTHO05D006912 1.5e-18 97.4 58 89.7
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 3.6e-17 92.8 59 72.9
VMungo0720G3119 Vigna mungo HOM05D000196 ORTHO05D001288 2.3e-08 63.5 38 78.9
Cfa023890 Carpinus fangiana HOM05D005636 ORTHO05D123467 5.7e-07 58.9 72 43.1


User provided reference genes

Program Settings