Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 0.0e+00 1389.0 719 100.0
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 0.0e+00 1386.3 719 99.9
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 0.0e+00 1313.9 741 92.3
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 0.0e+00 1302.7 690 95.9
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 0.0e+00 1302.7 690 95.9
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 0.0e+00 1121.7 693 83.8
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 0.0e+00 1120.5 691 83.8
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 0.0e+00 1118.2 692 83.5
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 0.0e+00 1114.8 691 83.4
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 0.0e+00 1104.7 694 82.6
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 0.0e+00 1102.4 694 82.4
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 0.0e+00 1097.0 696 81.8
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 0.0e+00 1078.5 697 80.6
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 3.1e-309 1064.7 693 79.5
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 3.3e-306 1054.7 695 79.3
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 4.0e-304 1047.7 694 78.4
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 2.4e-293 1011.9 695 77.0
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 4.6e-284 981.1 690 73.3
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 2.5e-245 852.4 518 82.6
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 1.4e-240 836.6 694 64.1
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 3.4e-239 832.0 692 64.2
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 1.4e-237 826.6 697 63.1
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 2.5e-237 825.9 693 63.8
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.2e-236 823.5 697 63.1
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.2e-236 823.5 697 63.1
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.1e-236 822.8 697 63.6
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 1.0e-235 820.5 698 63.9
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 1.4e-235 820.1 696 64.2
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 1.4e-235 820.1 696 64.2
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 2.0e-234 816.2 698 64.3
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 7.4e-234 814.3 697 63.3
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 9.7e-234 813.9 692 62.9
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 2.8e-233 812.4 681 64.2
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 3.7e-233 812.0 700 62.9
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 4.8e-233 811.6 696 63.1
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 6.9e-232 807.7 694 62.5
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 1.5e-231 806.6 711 62.9
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 3.4e-231 805.4 697 62.8
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 5.9e-231 804.7 724 60.9
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 2.9e-230 802.4 710 62.7
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 3.8e-230 802.0 697 63.3
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 4.2e-229 798.5 689 61.8
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 7.2e-229 797.7 697 62.1
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 7.2e-229 797.7 698 62.2
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 7.9e-228 794.3 688 63.4
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 7.9e-228 794.3 683 62.5
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 3.0e-227 792.3 700 61.7
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 8.8e-227 790.8 690 61.3
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 1.5e-226 790.0 700 61.4
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 2.0e-226 789.6 693 60.8
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 3.3e-226 788.9 674 63.6
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 3.3e-226 788.9 698 62.0
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 3.3e-226 788.9 698 61.3
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 4.4e-226 788.5 691 61.5
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 7.4e-226 787.7 690 61.7
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 9.7e-226 787.3 695 60.6
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 1.7e-225 786.6 696 60.2
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 2.8e-225 785.8 689 59.9
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 3.7e-225 785.4 698 61.0
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 4.8e-225 785.0 694 60.7
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 6.3e-225 784.6 688 59.6
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 4.1e-224 781.9 692 60.8
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 9.1e-224 780.8 694 61.1
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 9.1e-224 780.8 695 60.0
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 3.5e-223 778.9 696 61.4
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 3.8e-222 775.4 695 60.1
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 1.1e-221 773.9 728 58.5
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 1.5e-221 773.5 677 60.3
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 1.9e-221 773.1 728 58.4
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 7.2e-221 771.2 694 61.5
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 1.6e-220 770.0 691 60.8
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 4.7e-220 768.5 676 62.1
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 8.0e-220 767.7 696 60.9
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 6.7e-219 764.6 690 59.4
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 2.0e-218 763.1 690 59.1
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 7.4e-218 761.1 690 59.1
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 1.3e-217 760.4 703 58.7
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.7e-217 760.0 660 61.8
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 4.8e-217 758.4 702 57.5
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 6.3e-217 758.1 691 59.5
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 1.4e-216 756.9 694 60.1
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 1.8e-216 756.5 562 73.5
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.5e-215 752.3 747 57.0
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 5.2e-211 738.4 654 61.2
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 5.2e-211 738.4 699 59.2
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.5e-210 736.9 724 56.6
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 3.4e-210 735.7 696 57.2
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 1.1e-208 730.7 690 57.8
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 1.7e-206 723.4 699 57.4
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 3.2e-205 719.2 693 56.9
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 5.7e-202 708.4 580 64.5
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 2.8e-201 706.1 690 55.5
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 5.5e-197 691.8 519 68.4
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.1e-189 667.5 692 54.9
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 3.4e-186 656.0 453 72.0
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 5.4e-184 648.7 1024 41.9
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 4.0e-179 632.5 722 49.7
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 2.2e-177 626.7 681 49.6
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 4.9e-177 625.5 687 50.5
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 3.2e-176 622.9 707 48.5
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 3.0e-174 616.3 831 44.4
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 4.9e-169 599.0 547 59.8
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 5.1e-166 589.0 692 51.0
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 4.0e-163 579.3 674 51.3
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 7.1e-160 568.5 420 64.8
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 6.2e-156 555.4 438 64.6
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 2.4e-147 526.9 721 42.4
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 3.0e-142 510.0 551 52.3
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.1e-133 481.5 580 50.2
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 5.8e-130 469.2 724 39.5
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 1.3e-129 468.0 713 39.0
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 6.1e-103 379.4 509 40.3
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 1.2e-98 365.2 440 47.0
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 2.5e-96 357.5 457 47.9
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 2.5e-88 330.9 415 49.6
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 8.0e-87 325.9 299 58.9
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 4.4e-85 320.1 439 46.0
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 2.0e-74 284.6 319 49.8
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 4.6e-74 283.5 643 32.5
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 1.8e-70 271.6 380 45.5
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 2.6e-69 267.7 255 57.3
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 7.8e-66 256.1 222 61.3
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 3.0e-65 254.2 663 32.4
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 5.8e-61 240.0 140 81.4
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 2.3e-57 228.0 242 51.7
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 3.6e-55 220.7 367 43.1
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 4.9e-52 210.3 262 46.9
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-49 202.6 192 55.2
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 8.9e-46 189.5 259 50.2
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 1.2e-45 189.1 272 48.2
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 7.1e-43 179.9 137 67.2
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 6.6e-41 173.3 272 46.7
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 4.3e-40 170.6 272 46.0
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 9.6e-40 169.5 119 67.2
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 1.8e-38 165.2 104 72.1
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 3.2e-35 154.5 241 46.9
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 9.6e-32 142.9 174 44.8
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 2.1e-31 141.7 207 43.0
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 1.1e-30 139.4 111 59.5
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 5.3e-30 137.1 119 58.8
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 9.0e-30 136.3 108 63.9
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 1.2e-29 136.0 108 63.9
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 2.0e-29 135.2 119 57.1
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 2.2e-28 131.7 149 49.0
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 8.4e-28 129.8 86 70.9
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 8.4e-28 129.8 86 70.9
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 8.4e-28 129.8 86 70.9
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.9e-27 128.6 84 71.4
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 1.2e-26 125.9 207 36.7
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-26 125.9 104 59.6
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 1.2e-26 125.9 106 58.5
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 4.6e-26 124.0 158 48.7
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 1.5e-24 119.0 85 67.1
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 9.6e-24 116.3 102 61.8
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 3.7e-23 114.4 64 79.7
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.7e-23 114.4 85 64.7
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 4.5e-21 107.5 72 66.7
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 6.0e-18 97.1 95 55.8
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 1.8e-17 95.5 82 57.3
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 3.0e-17 94.7 55 74.5
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 3.9e-17 94.4 82 56.1
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 5.1e-17 94.0 56 75.0
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 6.7e-17 93.6 110 50.0
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 1.6e-15 89.0 62 64.5
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 2.1e-15 88.6 106 46.2
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 8.2e-15 86.7 62 64.5
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 1.1e-14 86.3 126 39.7
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 3.1e-14 84.7 77 57.1
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 5.3e-14 84.0 140 39.3
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 5.3e-14 84.0 51 76.5
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 2.6e-13 81.6 63 58.7
SHI51948 Sapria himalayana HOM05D003729 ORTHO05D004384 2.6e-13 81.6 192 37.0
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 7.6e-13 80.1 55 61.8
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 1.1e-11 76.3 52 67.3
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 1.1e-11 76.3 52 67.3
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 1.9e-11 75.5 117 46.2
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 3.2e-11 74.7 77 53.2
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-09 69.7 46 69.6
Oeu029504.1 Olea europaea HOM05D003729 ORTHO05D004384 3.0e-09 68.2 102 52.0
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 3.0e-09 68.2 62 54.8
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 3.9e-09 67.8 45 66.7
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 1.6e-07 62.4 33 84.8
Sabra06G0025400 Salix brachista HOM05D003729 ORTHO05D004384 3.7e-07 61.2 34 76.5
SHI44104 Sapria himalayana HOM05D003729 ORTHO05D004384 3.1e-06 58.2 252 31.3


User provided reference genes

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