Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 3.1e-157 558.5 302 100.0
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 1.7e-139 499.6 303 91.1
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 1.6e-134 483.0 334 82.0
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 5.5e-130 468.0 344 77.3
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 3.5e-129 465.3 359 75.2
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 1.1e-127 460.3 349 75.9
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 1.9e-127 459.5 344 76.7
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 2.5e-127 459.1 344 76.7
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 5.3e-125 451.4 344 75.6
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 5.1e-120 434.9 346 73.4
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 5.7e-119 431.4 346 73.1
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 2.4e-117 426.0 346 72.0
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 1.0e-115 420.6 352 71.0
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 2.7e-113 412.5 296 78.7
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 6.1e-113 411.4 345 68.7
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.4e-104 383.6 345 65.5
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 1.8e-104 383.3 341 64.8
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 1.0e-99 367.5 345 61.4
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.3e-99 367.1 345 63.8
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 5.5e-98 361.7 346 63.6
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 1.6e-97 360.1 356 60.4
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 5.9e-92 341.7 290 70.7
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 5.0e-91 338.6 299 68.9
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 1.2e-89 334.0 228 83.3
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 3.6e-89 332.4 289 69.6
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 4.7e-89 332.0 290 70.0
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 4.0e-88 328.9 290 69.3
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 2.3e-80 303.1 298 67.4
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 2.6e-79 299.7 288 63.9
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 9.8e-79 297.7 351 56.4
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 1.7e-78 297.0 288 63.5
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 3.7e-78 295.8 348 55.2
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.7e-75 287.0 350 54.0
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 3.6e-73 279.3 355 50.4
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 7.3e-58 228.4 124 98.4
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-56 224.6 131 92.4
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 7.6e-55 218.4 360 42.5
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 9.9e-55 218.0 357 42.6
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 9.9e-55 218.0 364 41.2
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.3e-54 217.6 357 42.3
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 1.9e-53 213.8 374 39.8
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.9e-53 213.8 357 42.3
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 2.7e-52 209.9 375 40.8
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 8.6e-51 204.9 362 41.4
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 2.5e-50 203.4 368 42.7
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 7.3e-50 201.8 353 41.1
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 3.6e-49 199.5 360 40.6
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 4.7e-49 199.1 373 41.3
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 6.2e-49 198.7 374 39.0
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 1.1e-48 198.0 364 40.9
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 1.4e-48 197.6 364 41.8
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 1.4e-48 197.6 362 40.1
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 2.4e-48 196.8 368 40.2
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.4e-48 196.8 363 39.9
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 3.1e-48 196.4 366 39.9
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 4.0e-48 196.1 370 40.3
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 1.2e-47 194.5 373 41.6
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 1.5e-47 194.1 364 40.1
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.5e-47 194.1 374 39.3
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 2.0e-47 193.7 370 39.2
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 5.8e-47 192.2 374 38.8
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 7.6e-47 191.8 361 38.5
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 7.6e-47 191.8 369 37.7
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 9.9e-47 191.4 369 39.0
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 1.3e-46 191.0 362 41.2
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 1.7e-46 190.7 388 37.6
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 2.2e-46 190.3 362 39.5
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 2.2e-46 190.3 364 38.7
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 4.9e-46 189.1 371 38.3
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 4.9e-46 189.1 369 38.5
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.4e-45 187.6 369 37.4
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 1.4e-45 187.6 375 40.8
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.9e-45 187.2 380 37.9
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 1.9e-45 187.2 366 39.6
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.9e-45 187.2 369 38.2
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 1.9e-45 187.2 368 38.3
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 2.4e-45 186.8 366 38.3
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 4.2e-45 186.0 368 38.9
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 4.2e-45 186.0 376 38.0
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 1.6e-44 184.1 361 39.1
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 2.7e-44 183.3 368 38.0
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 3.5e-44 183.0 368 37.8
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 4.6e-44 182.6 373 38.1
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 4.6e-44 182.6 347 38.0
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 6.0e-44 182.2 359 39.6
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 7.8e-44 181.8 369 39.3
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 7.8e-44 181.8 362 38.7
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.3e-43 181.0 366 38.3
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 1.7e-43 180.6 364 39.0
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.3e-43 180.3 373 37.3
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 2.3e-43 180.3 363 39.9
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 3.0e-43 179.9 353 38.0
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 3.9e-43 179.5 396 38.1
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 6.6e-43 178.7 367 37.1
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 1.1e-42 177.9 363 38.3
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 1.1e-42 177.9 379 36.9
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 1.1e-42 177.9 365 39.2
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 1.9e-42 177.2 363 38.0
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 3.3e-42 176.4 367 37.3
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 3.3e-42 176.4 369 38.2
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 9.6e-42 174.9 371 37.7
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 9.6e-42 174.9 373 37.3
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 9.6e-42 174.9 360 37.2
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 2.1e-41 173.7 385 35.6
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 2.8e-41 173.3 371 36.1
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 3.6e-41 172.9 373 37.3
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 1.8e-40 170.6 220 52.7
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 4.0e-40 169.5 354 39.8
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 6.9e-40 168.7 367 35.7
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 6.9e-40 168.7 374 38.0
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 4.4e-39 166.0 367 37.1
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 7.6e-39 165.2 342 38.3
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 7.6e-39 165.2 363 36.9
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 1.7e-38 164.1 369 37.4
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 1.7e-38 164.1 362 36.7
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 3.8e-38 162.9 365 37.3
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 6.4e-38 162.2 235 47.7
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 4.2e-37 159.5 359 35.7
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 9.3e-37 158.3 316 38.9
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 4.6e-36 156.0 365 32.3
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 6.0e-36 155.6 354 36.7
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 1.7e-35 154.1 360 38.6
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 3.9e-35 152.9 366 33.3
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 8.7e-35 151.8 342 35.1
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 1.9e-34 150.6 195 49.7
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 3.3e-34 149.8 350 35.4
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 3.3e-34 149.8 329 38.0
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.1e-33 147.1 244 44.7
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 4.8e-33 146.0 364 35.7
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 3.1e-32 143.3 185 48.1
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 6.9e-32 142.1 364 34.1
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 1.2e-31 141.4 367 33.8
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 1.3e-30 137.9 293 36.9
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 8.4e-30 135.2 359 35.7
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.1e-29 134.8 320 37.2
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 1.1e-29 134.8 363 33.3
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 1.1e-29 134.8 372 34.4
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 9.3e-29 131.7 154 60.4
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 9.3e-29 131.7 154 60.4
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 6.0e-28 129.0 378 32.5
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 3.7e-25 119.8 288 34.7
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.2e-23 114.8 205 42.0
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 4.5e-23 112.8 218 41.7
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 5.8e-23 112.5 127 54.3
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 7.6e-23 112.1 125 55.2
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.3e-22 111.3 125 52.0
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 1.7e-22 110.9 220 40.9
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 3.8e-22 109.8 122 54.9
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 8.4e-22 108.6 252 38.1
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 2.3e-19 100.5 138 45.7
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 1.1e-13 81.6 127 39.4
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 3.9e-11 73.2 212 32.5
A04p15050 Brassica napus HOM05D000880 ORTHO05D014501 9.7e-10 68.6 38 89.5
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 1.3e-09 68.2 90 43.3
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 3.7e-09 66.6 92 41.3
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 4.8e-09 66.2 82 47.6
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 1.8e-08 64.3 66 54.5
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 4.5e-07 59.7 425 24.7
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 2.2e-06 57.4 49 55.1


User provided reference genes

Program Settings