Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44555 Brassica carinata HOM05D002129 ORTHO05D002188 7.1e-271 936.8 514 100.0
BolC6t37201H Brassica oleracea HOM05D002129 ORTHO05D002188 9.0e-266 919.8 508 99.4
BraA07t29778Z Brassica rapa HOM05D002129 ORTHO05D002188 1.8e-253 879.0 508 93.5
A07p20910 Brassica napus HOM05D002129 ORTHO05D002188 3.6e-230 801.6 508 87.2
BcaB02g07879 Brassica carinata HOM05D002129 ORTHO05D002188 1.8e-229 799.3 517 86.1
AT5G41780 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 4.4e-180 635.2 544 70.2
AL7G47480 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 1.7e-163 580.1 549 65.0
Thhalv10028203m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 6.4e-155 551.6 526 64.4
Carub.0007s3360 Capsella rubella HOM05D002129 ORTHO05D002188 1.5e-148 530.4 568 59.5
CARHR212790 Cardamine hirsuta HOM05D002129 ORTHO05D002188 4.6e-137 492.3 530 60.0
Sp7g00310 Schrenkiella parvula HOM05D002129 ORTHO05D002188 3.3e-127 459.5 523 56.8
THA.LOC104809342 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 7.2e-98 362.1 707 40.6
AL2G10620 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 2.0e-95 354.0 638 44.4
AT1G64320 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 2.6e-92 343.6 637 43.3
THA.LOC104823609 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 5.0e-91 339.3 679 40.2
Carub.0002s0049 Capsella rubella HOM05D002129 ORTHO05D002188 1.0e-88 331.6 630 41.1
C06p20200 Brassica napus HOM05D002129 ORTHO05D002188 1.8e-88 330.9 187 99.5
CARHR046640 Cardamine hirsuta HOM05D002129 ORTHO05D002188 1.2e-84 318.2 626 40.6
A09p14800 Brassica napus HOM05D002129 ORTHO05D002188 2.7e-84 317.0 655 40.2
BcaC04g22558 Brassica carinata HOM05D002129 ORTHO05D002188 1.2e-81 308.1 626 40.4
Thhalv10024082m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 4.7e-81 306.2 578 41.3
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 5.7e-79 299.3 590 41.2
C09p17920 Brassica napus HOM05D002129 ORTHO05D002188 9.2e-77 292.0 646 39.0
BolC9t54689H Brassica oleracea HOM05D002129 ORTHO05D002188 2.0e-76 290.8 662 38.4
Sp2g00440 Schrenkiella parvula HOM05D002129 ORTHO05D002188 2.3e-72 277.3 303 58.1
BraA09t37126Z Brassica rapa HOM05D002129 ORTHO05D002188 5.9e-68 262.7 681 36.6
BcaB07g31454 Brassica carinata HOM05D002129 ORTHO05D002188 6.8e-64 249.2 697 35.0
BolC6t37202H Brassica oleracea HOM05D002129 ORTHO05D002188 2.2e-62 244.2 149 88.6
Cpa.g.sc122.43 Carica papaya HOM05D002129 ORTHO05D002188 1.4e-48 198.4 440 34.8
TWI15G0725 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 5.6e-42 176.4 756 27.1
MD14G1121400 Malus domestica HOM05D002129 ORTHO05D002188 4.0e-40 170.2 359 31.8
Thecc.03G293100 Theobroma cacao HOM05D002129 ORTHO05D002188 1.3e-38 165.2 725 26.5
Prupe.5G115200 Prunus persica HOM05D002129 ORTHO05D002188 6.4e-38 162.9 259 38.2
Duzib205G1563 Durio zibethinus HOM05D002129 ORTHO05D002188 1.4e-37 161.8 459 32.0
Potri.003G137300 Populus trichocarpa HOM05D002129 ORTHO05D002188 2.4e-37 161.0 770 26.9
Atru.chr9.2043 Acer truncatum HOM05D002129 ORTHO05D002188 5.4e-37 159.8 502 30.7
MD06G1102200 Malus domestica HOM05D002129 ORTHO05D002188 1.2e-36 158.7 456 29.4
Manes.01G046000 Manihot esculenta HOM05D002129 ORTHO05D002188 2.7e-36 157.5 337 37.4
RcHm_v2.0_Chr7g0195441 Rosa chinensis HOM05D002129 ORTHO05D002188 1.0e-35 155.6 449 31.2
Sabra03G0098800 Salix brachista HOM05D002129 ORTHO05D002188 3.0e-35 154.1 763 26.2
QL02p031447 Quercus lobata HOM05D002129 ORTHO05D002188 1.5e-34 151.8 442 30.8
QL12p009828 Quercus lobata HOM05D002129 ORTHO05D002188 3.3e-34 150.6 626 27.5
QL12p010595 Quercus lobata HOM05D002129 ORTHO05D002188 5.6e-34 149.8 626 27.5
Duzib084G0477 Durio zibethinus HOM05D002129 ORTHO05D002188 1.3e-33 148.7 726 25.3
CsaV3_4G006410 Cucumis sativus L. HOM05D002129 ORTHO05D002188 2.1e-33 147.9 560 29.1
Dinv38857 Davidia involucrata HOM05D002129 ORTHO05D002188 6.2e-33 146.4 638 27.7
Duzib068G0910 Durio zibethinus HOM05D002129 ORTHO05D002188 1.2e-31 142.1 711 25.9
Lalb_Chr16g0376981 Lupinus albus HOM05D002129 ORTHO05D002188 2.0e-31 141.4 303 34.3
Ciclev10024006m.g Citrus clementina HOM05D002129 ORTHO05D002188 3.4e-31 140.6 430 29.3
FAN18G4347 Fragaria x ananassa HOM05D002129 ORTHO05D002188 3.4e-31 140.6 457 28.9
C06p20190 Brassica napus HOM05D001971 ORTHO05D002188 4.4e-31 140.2 168 55.4
FAN18G1710 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.3e-30 138.7 457 29.3
Gohir.A08G099784 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.3e-30 138.7 715 26.9
CANSAT21G0822 Cannabis sativa HOM05D002129 ORTHO05D002188 1.7e-30 138.3 568 26.2
FAN04G1467 Fragaria x ananassa HOM05D002129 ORTHO05D002188 2.2e-30 137.9 513 29.2
MELO3C016309.2 Cucumis melo HOM05D002129 ORTHO05D002188 3.8e-30 137.1 560 28.2
FvH4_5g04071 Fragaria vesca HOM05D002129 ORTHO05D002188 6.4e-30 136.3 551 27.4
Sed0023438 Sechium edule HOM05D002129 ORTHO05D002188 6.4e-30 136.3 547 29.1
FAN13G0971 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.9e-29 134.8 457 27.4
ClCG07G014890 Citrullus lanatus HOM05D002129 ORTHO05D002188 6.0e-28 129.8 570 28.9
LjContig00312_ERROPOS870357g0010036 Lotus japonicus HOM05D002129 ORTHO05D002188 2.3e-27 127.9 450 30.4
Gorai.004G135400 Gossypium raimondii HOM05D002129 ORTHO05D002188 5.1e-27 126.7 739 24.9
FAN08G2643 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.5e-26 125.2 237 35.0
Ca_17496_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 2.5e-26 124.4 602 26.9
TPR.G3398 Trifolium pratense HOM05D002129 ORTHO05D002188 3.3e-26 124.0 444 28.8
Rhsim02G0241100 Rhododendron simsii HOM05D002129 ORTHO05D002188 2.8e-25 120.9 266 34.6
Lalb_Chr05g0224251 Lupinus albus HOM05D002129 ORTHO05D002188 4.8e-25 120.2 450 29.1
Lj8P210T83 Lonicera japonica HOM05D002129 ORTHO05D002188 8.1e-25 119.4 262 33.2
Medtr8g099265 Medicago truncatula HOM05D002129 ORTHO05D002188 8.1e-25 119.4 400 30.0
CSS0027740 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 2.4e-24 117.9 335 30.4
Dinv37551 Davidia involucrata HOM05D002129 ORTHO05D002188 2.4e-24 117.9 295 31.9
CSS0018198 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 3.1e-24 117.5 313 31.6
Psat7g027480 Pisum sativum HOM05D002129 ORTHO05D002188 3.1e-24 117.5 383 30.0
CSS0006894 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 4.0e-24 117.1 297 33.7
vmacro11445 Vaccinium macrocarpon HOM05D001971 ORTHO05D003057 1.2e-23 115.5 423 28.8
Sed0025225 Sechium edule HOM05D002129 ORTHO05D002188 1.5e-23 115.2 581 25.1
CSS0047098 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 2.6e-23 114.4 355 30.4
arahy.Tifrunner.gnm1.ann1.X2XLI1 Arachis hypogaea HOM05D002129 ORTHO05D002188 1.7e-22 111.7 452 27.4
COL.COLO4_21719 Corchorus olitorius HOM05D002129 ORTHO05D002188 8.4e-22 109.4 471 29.3
SalBow8G3978 Salvia bowleyana HOM05D002129 ORTHO05D002188 8.4e-22 109.4 308 30.2
PGSC0003DMG400004988 Solanum tuberosum HOM05D002129 ORTHO05D002188 8.4e-22 109.4 429 29.1
Gohir.D03G081800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 2.4e-21 107.8 610 26.4
Gohir.A02G102300 Gossypium hirsutum HOM05D002129 ORTHO05D002188 3.2e-21 107.5 610 26.6
Gorai.003G081800 Gossypium raimondii HOM05D002129 ORTHO05D002188 3.2e-21 107.5 610 26.7
Migut.E01235 Erythranthe guttata HOM05D002129 ORTHO05D002188 5.5e-21 106.7 227 33.5
Solyc12g056060.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 7.9e-20 102.8 443 26.9
Sopen12g028580 Solanum pennellii HOM05D002129 ORTHO05D002188 7.9e-20 102.8 441 27.0
arahy.Tifrunner.gnm1.ann1.CM611Z Arachis hypogaea HOM05D002129 ORTHO05D002188 3.9e-19 100.5 447 25.7
Peaxi162Scf00102g00176 Petunia axillaris HOM05D002129 ORTHO05D002188 3.9e-19 100.5 316 29.7
Lj4g0006933 Lotus japonicus HOM05D002129 ORTHO05D002188 6.7e-19 99.8 458 26.2
AUR62019807 Chenopodium quinoa HOM05D002129 ORTHO05D002188 2.5e-18 97.8 275 30.9
Gohir.D08G132401 Gossypium hirsutum HOM05D002129 ORTHO05D002188 2.5e-18 97.8 729 24.3
Solyc08g008260.2 Solanum lycopersicum HOM05D002129 ORTHO05D002188 2.5e-18 97.8 248 31.5
PGSC0003DMG400005787 Solanum tuberosum HOM05D002129 ORTHO05D002188 2.5e-18 97.8 433 26.1
AUR62010808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 4.3e-18 97.1 423 29.6
Phvul.002G163000 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 5.6e-18 96.7 559 26.8
Nitab4.5_0002944g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 8.1e-17 92.8 216 31.5
SGA_v2.0_scaffold173G39089 Striga asiatica HOM05D002129 ORTHO05D002188 1.4e-16 92.0 249 31.7
Migut.A00679 Erythranthe guttata HOM05D002129 ORTHO05D002188 2.4e-16 91.3 268 29.1
Sopen08g004110 Solanum pennellii HOM05D002129 ORTHO05D002188 3.1e-16 90.9 435 26.9
HanXRQChr17g0535111 Helianthus annuus HOM05D002129 ORTHO05D002188 4.0e-16 90.5 208 33.7
MSTRG.11936 Avicennia marina HOM05D002129 ORTHO05D002188 9.0e-16 89.4 362 27.9
Cc08_g15770 Coffea canephora HOM05D002129 ORTHO05D002188 9.0e-16 89.4 613 23.5
MD14G1121500 Malus domestica HOM05D002129 ORTHO05D002188 9.0e-16 89.4 314 25.5
QL02p031434 Quercus lobata HOM05D002129 ORTHO05D002188 9.0e-16 89.4 156 37.8
Duzib084G0891 Durio zibethinus HOM05D002129 ORTHO05D002188 1.2e-15 89.0 157 39.5
Oeu061086.1 Olea europaea HOM05D002129 ORTHO05D002188 1.5e-15 88.6 455 24.0
CAN.G792.47 Capsicum annuum HOM05D002129 ORTHO05D002188 2.0e-15 88.2 216 30.6
Duzib068G1418 Durio zibethinus HOM05D002129 ORTHO05D002188 3.4e-15 87.4 158 38.6
TWI60G1278 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 3.4e-15 87.4 362 24.9
Thecc.03G293200 Theobroma cacao HOM05D002129 ORTHO05D002188 4.5e-15 87.0 155 38.7
CAN.G26.3 Capsicum annuum HOM05D002129 ORTHO05D002188 5.8e-15 86.7 417 25.9
Nitab4.5_0006656g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 1.7e-14 85.1 210 30.5
CSS0045654 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 2.2e-14 84.7 168 35.1
CANSAT21G2383 Cannabis sativa HOM05D002129 ORTHO05D002188 2.9e-14 84.3 160 35.0
Nitab4.5_0002213g0050 Nicotiana tabacum HOM05D002129 ORTHO05D002188 8.4e-14 82.8 262 27.5
VMungo0251G1783 Vigna mungo HOM05D002129 ORTHO05D002188 8.4e-14 82.8 428 27.3
Gohir.D09G185400 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.4e-13 82.0 190 34.7
Gorai.006G207900 Gossypium raimondii HOM05D002129 ORTHO05D002188 4.2e-13 80.5 190 34.2
Prupe.5G115300 Prunus persica HOM05D002129 ORTHO05D002188 5.5e-13 80.1 335 25.1
ECA246G1519 Erigeron canadensis HOM05D002129 ORTHO05D002188 9.3e-13 79.3 367 28.1
Rhsim07G0084000 Rhododendron simsii HOM05D002129 ORTHO05D002188 9.3e-13 79.3 344 26.2
Sc01g0010120 Simmondsia chinensis HOM05D002129 ORTHO05D002188 9.3e-13 79.3 472 23.7
Eucgr.E00844 Eucalyptus grandis HOM05D002129 ORTHO05D002188 1.2e-12 79.0 156 34.0
unitig_748.g7418 Utricularia gibba HOM05D002129 ORTHO05D002188 1.2e-12 79.0 440 24.5
Potri.001G094266 Populus trichocarpa HOM05D002129 ORTHO05D002188 2.1e-12 78.2 100 46.0
Glyma.05G215000 Glycine max HOM05D002129 ORTHO05D002188 2.7e-12 77.8 428 26.4
Peaxi162Scf00117g00131 Petunia axillaris HOM05D002129 ORTHO05D002188 4.6e-12 77.0 261 26.8
Actinidia01396 Actinidia chinensis HOM05D002129 ORTHO05D002188 7.9e-12 76.3 397 24.2
HanXRQChr10g0292651 Helianthus annuus HOM05D002129 ORTHO05D002188 7.9e-12 76.3 585 24.1
Oeu009945.1 Olea europaea HOM05D002129 ORTHO05D002188 7.9e-12 76.3 174 34.5
Sc07g0009950 Simmondsia chinensis HOM05D002129 ORTHO05D002188 7.9e-12 76.3 374 24.6
PGR042G1587 Punica granatum HOM05D002129 ORTHO05D002188 1.0e-11 75.9 776 22.3
Manes.02G012600 Manihot esculenta HOM05D002129 ORTHO05D002188 1.3e-11 75.5 159 33.3
VMungo0251G1428 Vigna mungo HOM05D002129 ORTHO05D002188 1.8e-11 75.1 155 32.9
Nitab4.5_0005112g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 3.0e-11 74.3 332 24.1
Gorai.003G081700 Gossypium raimondii HOM05D002129 ORTHO05D002188 3.9e-11 73.9 151 35.8
MD06G1102300 Malus domestica HOM05D002129 ORTHO05D002188 3.9e-11 73.9 305 25.2
Sabra03G0098900 Salix brachista HOM05D002129 ORTHO05D002188 5.1e-11 73.6 413 22.8
Potri.003G137400 Populus trichocarpa HOM05D002129 ORTHO05D002188 2.5e-10 71.2 409 23.0
Actinidia04211 Actinidia chinensis HOM05D002129 ORTHO05D002188 7.4e-10 69.7 322 25.5
Lsat_1_v5_gn_6_12040 Lactuca sativa HOM05D002129 ORTHO05D002188 9.6e-10 69.3 179 34.1
TPR.G3412 Trifolium pratense HOM05D002129 ORTHO05D002188 1.3e-09 68.9 150 32.7
GSVIVG01019499001 Vitis vinifera HOM05D002129 ORTHO05D002188 1.3e-09 68.9 256 28.9
EL10Ac5g12884 Beta vulgaris HOM05D002129 ORTHO05D002188 1.6e-09 68.6 159 30.8
Gohir.A09G190800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.6e-09 68.6 190 32.1
Oeu042386.1 Olea europaea HOM05D002129 ORTHO05D002188 1.6e-09 68.6 418 26.6
Phvul.002G296200 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 3.7e-09 67.4 335 26.3
Sed0022097 Sechium edule HOM05D002129 ORTHO05D002188 3.7e-09 67.4 440 25.2
CiPaw.11G123900 Carya illinoinensis HOM05D002129 ORTHO05D002188 4.8e-09 67.0 265 26.4
Duzib205G0555 Durio zibethinus HOM05D002129 ORTHO05D002188 1.1e-08 65.9 594 24.4
AUR62010809 Chenopodium quinoa HOM05D002129 ORTHO05D002188 1.4e-08 65.5 367 23.4
Ciclev10018618m.g Citrus clementina HOM05D002129 ORTHO05D002188 1.4e-08 65.5 474 25.7
CiPaw.12G085000 Carya illinoinensis HOM05D002129 ORTHO05D002188 2.4e-08 64.7 377 24.1
AUR62019808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 2.4e-08 64.7 268 27.2
Oeu061087.1 Olea europaea HOM05D002129 ORTHO05D002188 3.1e-08 64.3 456 24.6
DCAR_005027 Daucus carota HOM05D002129 ORTHO05D002188 4.1e-08 63.9 385 22.6
Manes.01G045900 Manihot esculenta HOM05D002129 ORTHO05D002188 5.3e-08 63.5 473 24.3
Lalb_Chr09g0332631 Lupinus albus HOM05D002129 ORTHO05D002188 6.9e-08 63.2 187 29.4
Psat0s4440g0080 Pisum sativum HOM05D002129 ORTHO05D002188 6.9e-08 63.2 165 35.2
arahy.Tifrunner.gnm1.ann1.DN0YA4 Arachis hypogaea HOM05D002129 ORTHO05D002188 1.2e-07 62.4 386 24.1
Oeu042385.1 Olea europaea HOM05D002129 ORTHO05D002188 1.2e-07 62.4 168 27.4
arahy.Tifrunner.gnm1.ann1.Q3GPI2 Arachis hypogaea HOM05D002129 ORTHO05D002188 2.0e-07 61.6 351 23.6
Phvul.002G296300 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 2.6e-07 61.2 150 30.7
unitig_52.g17439 Utricularia gibba HOM05D002129 ORTHO05D002188 2.6e-07 61.2 457 23.0
EL10Ac5g12883 Beta vulgaris HOM05D002129 ORTHO05D002188 3.4e-07 60.8 382 26.2
MELO3C016308.2 Cucumis melo HOM05D002129 ORTHO05D002188 5.9e-07 60.1 411 22.6
COL.COLO4_21718 Corchorus olitorius HOM05D002129 ORTHO05D002188 7.6e-07 59.7 157 30.6
CsaV3_4G006420 Cucumis sativus L. HOM05D002129 ORTHO05D002188 7.6e-07 59.7 411 23.1
Glyma.08G021300 Glycine max HOM05D002129 ORTHO05D002188 7.6e-07 59.7 370 25.1
Peaxi162Scf00074g01134 Petunia axillaris HOM05D002129 ORTHO05D002188 7.6e-07 59.7 178 30.3
Ah.12g052300 Amaranthus hybridus HOM05D002129 ORTHO05D002188 1.0e-06 59.3 405 24.9
Potri.001G094200 Populus trichocarpa HOM05D002129 ORTHO05D002188 1.0e-06 59.3 491 23.4
MBI07_g09921_MAGBIO Magnolia biondii HOM05D002129 ORTHO05D002188 2.2e-06 58.2 432 24.5
Sabra01G0070100 Salix brachista HOM05D002129 ORTHO05D002188 2.2e-06 58.2 491 22.8
Dinv37550 Davidia involucrata HOM05D002129 ORTHO05D002188 3.8e-06 57.4 505 22.2
Lalb_Chr16g0390551 Lupinus albus HOM05D002129 ORTHO05D002188 3.8e-06 57.4 443 23.3
Hund11405 Selenicereus undatus HOM05D002129 ORTHO05D002188 3.8e-06 57.4 151 30.5
Aa31LG9G340 Aethionema arabicum HOM05D002129 ORTHO05D002188 5.0e-06 57.0 188 29.3
HanXRQChr03g0085141 Helianthus annuus HOM05D002129 ORTHO05D002188 6.5e-06 56.6 151 27.8
FvH4_5g04072 Fragaria vesca HOM05D002129 ORTHO05D002188 8.5e-06 56.2 519 20.6


User provided reference genes

Program Settings