Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44304 Brassica carinata HOM05D014987 ORTHO05D019987 1.3e-45 186.0 92 100.0
BolC6t36926H Brassica oleracea HOM05D014987 ORTHO05D019987 1.3e-45 186.0 92 100.0
C06p17290 Brassica napus HOM05D014987 ORTHO05D019987 2.0e-22 109.0 55 98.2
BcaC09g48155 Brassica carinata HOM05D000815 ORTHO05D000636 1.0e-18 96.7 56 85.7
BcaB04g21150 Brassica carinata HOM05D000815 ORTHO05D000636 1.7e-18 95.9 57 82.5
BolC1t05335H Brassica oleracea HOM05D000815 ORTHO05D000636 5.0e-18 94.4 57 82.5
BcaC09g48152 Brassica carinata HOM05D014987 ORTHO05D000636 6.5e-18 94.0 57 80.7
BraA01t04200Z Brassica rapa HOM05D000815 ORTHO05D000636 8.5e-18 93.6 57 78.9
BcaC07g37459 Brassica carinata HOM05D014987 ORTHO05D000636 2.3e-15 85.5 56 73.2
Sp3g09420 Schrenkiella parvula HOM05D000815 ORTHO05D000636 3.0e-15 85.1 56 82.1
Thhalv10021383m.g Eutrema salsugineum HOM05D000815 ORTHO05D000636 5.2e-15 84.3 54 81.5
C08p09330 Brassica napus HOM05D014987 ORTHO05D000636 1.2e-14 83.2 56 71.4
A05p38170 Brassica napus HOM05D000815 ORTHO05D000636 2.6e-14 82.0 59 74.6
BraA05t22610Z Brassica rapa HOM05D000815 ORTHO05D000636 2.6e-14 82.0 59 74.6
C05p56980 Brassica napus HOM05D000815 ORTHO05D000636 2.2e-13 79.0 59 72.9
BolC5t34361H Brassica oleracea HOM05D000815 ORTHO05D000636 2.2e-13 79.0 59 72.9
C09p41120 Brassica napus HOM05D014987 ORTHO05D019987 2.8e-13 78.6 57 66.7
BolC9t56990H Brassica oleracea HOM05D014987 ORTHO05D019987 2.8e-13 78.6 57 66.7
CARHR085680 Cardamine hirsuta HOM05D000815 ORTHO05D000636 3.7e-13 78.2 56 73.2
Aa31LG11G6610 Aethionema arabicum HOM05D000815 ORTHO05D000636 6.3e-13 77.4 56 73.2
Carub.0003s1039 Capsella rubella HOM05D000815 ORTHO05D000636 1.1e-12 76.6 56 73.2
AL3G22640 Arabidopsis lyrata HOM05D000815 ORTHO05D000636 1.6e-11 72.8 50 76.0
AT5G05550 Arabidopsis thaliana HOM05D000815 ORTHO05D000636 1.6e-11 72.8 57 68.4
BcaC05g29401 Brassica carinata HOM05D000815 ORTHO05D000636 1.6e-11 72.8 53 71.7
CARHR153390 Cardamine hirsuta HOM05D014987 ORTHO05D019987 2.7e-11 72.0 55 69.1
Sp6g37320 Schrenkiella parvula HOM05D000815 ORTHO05D000636 3.5e-11 71.6 56 67.9
AL6G15440 Arabidopsis lyrata HOM05D000815 ORTHO05D000636 4.5e-11 71.2 56 67.9
Aa31LG3G4250 Aethionema arabicum HOM05D000815 ORTHO05D000636 1.0e-10 70.1 50 74.0
AT3G11100 Arabidopsis thaliana HOM05D000815 ORTHO05D000636 1.3e-10 69.7 50 74.0
Manes.07G132100 Manihot esculenta HOM05D000815 ORTHO05D000636 3.8e-10 68.2 55 63.6
Carub.0006s0445 Capsella rubella HOM05D000815 ORTHO05D000636 8.6e-10 67.0 48 72.9
Potri.008G071300 Populus trichocarpa HOM05D000815 ORTHO05D000636 8.6e-10 67.0 55 63.6
THA.LOC104816538 Tarenaya hassleriana HOM05D000815 ORTHO05D000636 8.6e-10 67.0 47 76.6
A10p30740 Brassica napus HOM05D000815 ORTHO05D000636 1.9e-09 65.9 60 60.0
C09p71230 Brassica napus HOM05D000815 ORTHO05D000636 1.9e-09 65.9 56 62.5
Sabra08G0052600 Salix brachista HOM05D000815 ORTHO05D000636 1.9e-09 65.9 55 61.8
Ciclev10033792m.g Citrus clementina HOM05D007655 ORTHO05D000636 3.3e-09 65.1 48 68.8
BolC9t59884H Brassica oleracea HOM05D000815 ORTHO05D000636 4.3e-09 64.7 56 60.7
Duzib106G1636 Durio zibethinus HOM05D000815 ORTHO05D000636 4.3e-09 64.7 55 63.6
Thecc.10G013000 Theobroma cacao HOM05D000815 ORTHO05D000636 4.3e-09 64.7 55 63.6
QL08p063514 Quercus lobata HOM05D000815 ORTHO05D000636 9.5e-09 63.5 55 61.8
Haze_17253 Corylus avellana HOM05D000815 ORTHO05D000636 1.6e-08 62.8 55 60.0
RcHm_v2.0_Chr1g0370671 Rosa chinensis HOM05D000815 ORTHO05D000636 3.6e-08 61.6 56 55.4
CANSAT56G1533 Cannabis sativa HOM05D000815 ORTHO05D000636 4.7e-08 61.2 48 66.7
TWI53G0673 Tripterygium wilfordii HOM05D000815 ORTHO05D000636 4.7e-08 61.2 56 57.1
Cpa.g.sc19.152 Carica papaya HOM05D000815 ORTHO05D000636 6.1e-08 60.8 55 61.8
CiPaw.02G194300 Carya illinoinensis HOM05D000815 ORTHO05D000636 6.1e-08 60.8 55 58.2
GSVIVG01030322001 Vitis vinifera HOM05D000815 ORTHO05D000636 8.0e-08 60.5 59 54.2
CSS0007740 Camellia sinensis var. sinensis HOM05D000815 ORTHO05D000636 1.4e-07 59.7 57 56.1
CDE10G0137 Ceratophyllum demersum HOM05D000815 ORTHO05D000636 1.8e-07 59.3 46 60.9
Potri.010G186200 Populus trichocarpa HOM05D000815 ORTHO05D000636 1.8e-07 59.3 55 58.2
FAN03G1260 Fragaria x ananassa HOM05D000815 ORTHO05D000636 4.0e-07 58.2 54 55.6
FAN10G0549 Fragaria x ananassa HOM05D000815 ORTHO05D000636 4.0e-07 58.2 53 56.6
Prupe.2G253200 Prunus persica HOM05D000815 ORTHO05D000636 4.0e-07 58.2 53 60.4
Rhsim09G0179000 Rhododendron simsii HOM05D000815 ORTHO05D000636 5.2e-07 57.8 48 66.7
CARHR207710 Cardamine hirsuta HOM05D000815 ORTHO05D000636 6.8e-07 57.4 45 68.9
Actinidia00668 Actinidia chinensis HOM05D000815 ORTHO05D000636 1.2e-06 56.6 57 54.4
Oeu053230.1 Olea europaea HOM05D000815 ORTHO05D000636 1.2e-06 56.6 53 54.7
TAR623G1576 Trochodendron aralioides HOM05D000815 ORTHO05D000636 1.2e-06 56.6 56 53.6
CDE10G0436 Ceratophyllum demersum HOM05D000815 ORTHO05D000636 1.5e-06 56.2 50 56.0
TAR369G0236 Trochodendron aralioides HOM05D000815 ORTHO05D000636 1.5e-06 56.2 56 51.8
DCAR_011831 Daucus carota HOM05D000815 ORTHO05D000636 2.0e-06 55.8 84 40.5
FvH4_7g24800 Fragaria vesca HOM05D000815 ORTHO05D000636 2.0e-06 55.8 43 62.8
FAN01G2247 Fragaria x ananassa HOM05D000815 ORTHO05D000636 2.0e-06 55.8 43 62.8
FAN06G1167 Fragaria x ananassa HOM05D000815 ORTHO05D000636 2.0e-06 55.8 43 62.8
Nn1g09121 Nelumbo nucifera HOM05D000815 ORTHO05D000636 2.0e-06 55.8 46 58.7
CSS0040066 Camellia sinensis var. sinensis HOM05D000815 ORTHO05D000636 3.4e-06 55.1 43 67.4
Haze_13375 Corylus avellana HOM05D000815 ORTHO05D000636 3.4e-06 55.1 50 62.0
Oeu058993.2 Olea europaea HOM05D000815 ORTHO05D000636 3.4e-06 55.1 49 55.1
TAR624G0889 Trochodendron aralioides HOM05D000815 ORTHO05D000636 3.4e-06 55.1 46 58.7
MD01G1155800 Malus domestica HOM05D000815 ORTHO05D000636 4.4e-06 54.7 43 62.8
TAR626G0720 Trochodendron aralioides HOM05D000815 ORTHO05D000636 4.4e-06 54.7 46 58.7
GSVIVG01032781001 Vitis vinifera HOM05D007655 ORTHO05D009698 4.4e-06 54.7 57 52.6
Gorai.013G017000 Gossypium raimondii HOM05D000815 ORTHO05D000636 5.7e-06 54.3 51 58.8
MBI15_g43057_MAGBIO Magnolia biondii HOM05D000815 ORTHO05D000636 5.7e-06 54.3 48 58.3
MD07G1224600 Malus domestica HOM05D000815 ORTHO05D000636 5.7e-06 54.3 58 51.7
PSO017G3864 Papaver somniferum HOM05D000815 ORTHO05D000636 5.7e-06 54.3 50 52.0
Gohir.D13G015600 Gossypium hirsutum HOM05D000815 ORTHO05D000636 7.5e-06 53.9 51 60.8
MBI06_g08591_MAGBIO Magnolia biondii HOM05D000815 ORTHO05D000636 7.5e-06 53.9 47 55.3
Aqoxy4G00340 Aquilegia oxysepala HOM05D000815 ORTHO05D000636 9.8e-06 53.5 56 48.2
TWI14G1306 Tripterygium wilfordii HOM05D000815 ORTHO05D000636 9.8e-06 53.5 60 48.3
vmacro10027 Vaccinium macrocarpon HOM05D000815 ORTHO05D000636 9.8e-06 53.5 47 63.8


User provided reference genes

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