Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44099 Brassica carinata HOM05D004494 ORTHO05D005493 1.1e-40 169.5 84 100.0
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 2.8e-15 85.1 84 57.1
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 2.8e-15 85.1 84 57.1
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 2.8e-15 85.1 84 57.1
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 2.8e-15 85.1 84 57.1
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 2.8e-15 85.1 84 57.1
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 2.8e-15 85.1 84 57.1
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 2.8e-15 85.1 84 57.1
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 2.8e-15 85.1 84 57.1
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 2.8e-15 85.1 84 57.1
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 2.8e-15 85.1 84 57.1
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 1.4e-14 82.8 84 56.0
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 5.2e-14 80.9 84 52.4
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 6.8e-14 80.5 84 54.8
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 8.9e-14 80.1 84 52.4
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 8.9e-14 80.1 84 52.4
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 8.9e-14 80.1 84 54.8
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 8.9e-14 80.1 84 52.4
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 8.9e-14 80.1 84 52.4
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 8.9e-14 80.1 84 52.4
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 8.9e-14 80.1 84 52.4
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 8.9e-14 80.1 84 52.4
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 8.9e-14 80.1 84 52.4
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 2.0e-13 79.0 84 51.2
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 2.0e-13 79.0 77 57.1
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 2.6e-13 78.6 84 51.2
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 2.6e-13 78.6 84 51.2
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 2.6e-13 78.6 99 49.5
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 2.6e-13 78.6 84 51.2
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 2.6e-13 78.6 84 51.2
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 2.6e-13 78.6 84 51.2
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 2.6e-13 78.6 84 51.2
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 2.6e-13 78.6 84 51.2
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 2.6e-13 78.6 84 51.2
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 3.4e-13 78.2 84 51.2
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 4.4e-13 77.8 84 50.0
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 5.8e-13 77.4 84 51.2
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 5.8e-13 77.4 84 51.2
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 7.6e-13 77.0 81 54.3
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 7.6e-13 77.0 84 52.4
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 7.6e-13 77.0 84 52.4
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 7.6e-13 77.0 84 50.0
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 7.6e-13 77.0 84 50.0
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 7.6e-13 77.0 84 50.0
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 7.6e-13 77.0 84 51.2
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 9.9e-13 76.6 84 50.0
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 9.9e-13 76.6 84 50.0
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 9.9e-13 76.6 84 50.0
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 9.9e-13 76.6 84 50.0
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 9.9e-13 76.6 84 50.0
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 9.9e-13 76.6 84 50.0
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 9.9e-13 76.6 84 50.0
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 9.9e-13 76.6 84 50.0
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 9.9e-13 76.6 84 50.0
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 1.3e-12 76.3 85 54.1
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 1.3e-12 76.3 84 50.0
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 1.7e-12 75.9 82 51.2
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 1.7e-12 75.9 84 50.0
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 2.2e-12 75.5 80 52.5
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 2.2e-12 75.5 84 48.8
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 2.2e-12 75.5 84 48.8
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 2.2e-12 75.5 84 50.0
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 2.9e-12 75.1 84 48.8
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 4.9e-12 74.3 85 50.6
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 4.9e-12 74.3 84 48.8
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 4.9e-12 74.3 85 50.6
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 8.4e-12 73.6 84 47.6
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 8.4e-12 73.6 82 50.0
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 1.1e-11 73.2 84 48.8
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 1.1e-11 73.2 84 47.6
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 1.9e-11 72.4 77 51.9
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 1.9e-11 72.4 84 46.4
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 1.9e-11 72.4 84 47.6
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 2.4e-11 72.0 80 51.2
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 2.4e-11 72.0 80 51.2
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 2.4e-11 72.0 80 51.2
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 2.4e-11 72.0 82 47.6
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 2.4e-11 72.0 82 47.6
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 2.4e-11 72.0 83 48.2
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 3.2e-11 71.6 76 52.6
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 3.2e-11 71.6 52 69.2
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 4.1e-11 71.2 39 84.6
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 9.2e-11 70.1 39 82.1
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 9.2e-11 70.1 79 48.1
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 1.6e-10 69.3 84 47.6
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 2.1e-10 68.9 78 48.7
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 2.1e-10 68.9 79 49.4
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 2.1e-10 68.9 79 49.4
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 2.1e-10 68.9 79 49.4
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 4.6e-10 67.8 77 48.1
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 6.0e-10 67.4 76 50.0
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 6.0e-10 67.4 84 46.4
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 6.0e-10 67.4 84 46.4
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 1.0e-09 66.6 78 47.4
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 1.0e-09 66.6 74 50.0
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.3e-09 66.2 83 44.6
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.7e-09 65.9 39 69.2
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.7e-09 65.9 39 69.2
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 1.7e-09 65.9 76 47.4
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 1.7e-09 65.9 78 46.2
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 1.7e-09 65.9 78 46.2
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 1.7e-09 65.9 78 46.2
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 1.7e-09 65.9 78 46.2
unitig_26.g9512 Utricularia gibba HOM05D004494 ORTHO05D005493 1.7e-09 65.9 88 47.7
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 2.3e-09 65.5 76 47.4
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 2.3e-09 65.5 76 47.4
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 2.3e-09 65.5 76 47.4
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 2.3e-09 65.5 76 47.4
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 2.3e-09 65.5 76 47.4
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 3.0e-09 65.1 76 47.4
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 3.0e-09 65.1 39 79.5
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 3.0e-09 65.1 39 79.5
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 3.9e-09 64.7 39 74.4
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 5.1e-09 64.3 76 46.1
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 5.1e-09 64.3 76 46.1
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 5.1e-09 64.3 78 44.9
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 5.1e-09 64.3 78 44.9
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 6.6e-09 63.9 76 48.7
C05p31860 Brassica napus HOM05D004494 ORTHO05D005493 6.6e-09 63.9 46 71.7
BolC5t31914H Brassica oleracea HOM05D004494 ORTHO05D005493 6.6e-09 63.9 46 71.7
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 6.6e-09 63.9 76 46.1
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 6.6e-09 63.9 82 45.1
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 8.7e-09 63.5 76 46.1
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 1.1e-08 63.2 76 46.1
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 1.5e-08 62.8 70 52.9
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 1.5e-08 62.8 81 44.4
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.9e-08 62.4 57 47.4
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.9e-08 62.4 77 44.2
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 1.9e-08 62.4 78 46.2
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 4.3e-08 61.2 38 73.7
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 4.3e-08 61.2 77 46.8
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 5.6e-08 60.8 76 43.4
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 1.2e-07 59.7 52 57.7
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.2e-07 59.7 76 43.4
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 1.2e-07 59.7 35 77.1
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.6e-07 59.3 35 71.4
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 2.8e-07 58.5 32 81.2
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 2.8e-07 58.5 72 44.4
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 3.6e-07 58.2 39 71.8
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 3.6e-07 58.2 31 83.9
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 1.8e-06 55.8 75 41.3
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 2.4e-06 55.5 34 76.5
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 4.0e-06 54.7 31 80.6
Os07g0105100 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 9.0e-06 53.5 50 56.0


User provided reference genes

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