Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43757 Brassica carinata HOM05D002139 ORTHO05D032619 6.2e-146 520.8 265 100.0
C06p11330 Brassica napus HOM05D002139 ORTHO05D032619 4.9e-58 228.8 125 92.8
BolC6t36268H Brassica oleracea HOM05D002139 ORTHO05D032619 4.9e-58 228.8 125 92.8
BcaB04g21116 Brassica carinata HOM05D002139 ORTHO05D002264 1.1e-17 94.7 94 58.5
BcaC09g48193 Brassica carinata HOM05D002139 ORTHO05D002264 1.2e-16 91.3 94 58.5
BolC1t05288H Brassica oleracea HOM05D002139 ORTHO05D002264 1.2e-16 91.3 94 58.5
BraA01t04159Z Brassica rapa HOM05D002139 ORTHO05D002264 3.6e-16 89.7 94 57.4
A05p37560 Brassica napus HOM05D002139 ORTHO05D002264 4.6e-16 89.4 94 54.3
BraA05t22554Z Brassica rapa HOM05D002139 ORTHO05D002264 4.6e-16 89.4 94 54.3
Sp3g10010 Schrenkiella parvula HOM05D002139 ORTHO05D002264 1.8e-15 87.4 92 54.3
Thhalv10021698m.g Eutrema salsugineum HOM05D002139 ORTHO05D002264 3.0e-15 86.7 92 53.3
BcaB04g18660 Brassica carinata HOM05D002139 ORTHO05D002264 8.8e-15 85.1 94 54.3
BcaC05g29330 Brassica carinata HOM05D002139 ORTHO05D002264 8.8e-15 85.1 94 52.1
BcaC05g29331 Brassica carinata HOM05D002139 ORTHO05D002264 8.8e-15 85.1 94 52.1
C05p56120 Brassica napus HOM05D002139 ORTHO05D002264 8.8e-15 85.1 94 52.1
CARHR086340 Cardamine hirsuta HOM05D002139 ORTHO05D002264 1.1e-14 84.7 89 56.2
BolC5t34279H Brassica oleracea HOM05D002139 ORTHO05D002264 4.3e-14 82.8 94 51.1
A03p37280 Brassica napus HOM05D002139 ORTHO05D002264 1.3e-13 81.3 100 55.0
AT3G11780 Arabidopsis thaliana HOM05D002139 ORTHO05D002264 2.8e-13 80.1 90 53.3
BraA03t12888Z Brassica rapa HOM05D002139 ORTHO05D002264 4.8e-13 79.3 95 53.7
Carub.0003s1112 Capsella rubella HOM05D002139 ORTHO05D002264 1.4e-12 77.8 98 51.0
C03p45140 Brassica napus HOM05D002139 ORTHO05D002264 5.3e-12 75.9 95 52.6
AL3G23360 Arabidopsis lyrata HOM05D002139 ORTHO05D002264 9.1e-12 75.1 90 52.2
BcaB06g25584 Brassica carinata HOM05D002139 ORTHO05D002264 9.1e-12 75.1 94 47.9
BolC3t16778H Brassica oleracea HOM05D002139 ORTHO05D002264 1.2e-11 74.7 95 51.6
Thhalv10016064m.g Eutrema salsugineum HOM05D002139 ORTHO05D002264 1.9e-09 67.4 89 48.3
C02p02710 Brassica napus HOM05D002139 ORTHO05D002264 4.2e-09 66.2 75 46.7
BraA02t04880Z Brassica rapa HOM05D002139 ORTHO05D002264 1.2e-08 64.7 89 44.9
Rhsim01G0068700 Rhododendron simsii HOM05D002139 ORTHO05D002264 1.6e-08 64.3 71 45.1
THA.LOC104816636 Tarenaya hassleriana HOM05D002139 ORTHO05D002264 1.6e-08 64.3 90 44.4
BcaC03g13167 Brassica carinata HOM05D002139 ORTHO05D002264 2.1e-08 63.9 44 65.9
Dinv12355 Davidia involucrata HOM05D002139 ORTHO05D002264 4.7e-08 62.8 48 62.5
HPP92_000987 Vanilla planifolia HOM05D002139 ORTHO05D002264 4.7e-08 62.8 77 42.9
GSVIVG01022566001 Vitis vinifera HOM05D002139 ORTHO05D002264 4.7e-08 62.8 60 53.3
Ciclev10013007m.g Citrus clementina HOM05D002139 ORTHO05D002264 2.3e-07 60.5 43 62.8
BolC2t06235H Brassica oleracea HOM05D002139 ORTHO05D002264 3.0e-07 60.1 44 63.6
Carub.0006s0536 Capsella rubella HOM05D002139 ORTHO05D002264 3.9e-07 59.7 89 44.9
BcaB05g21669 Brassica carinata HOM05D002139 ORTHO05D002264 5.1e-07 59.3 44 63.6
AL6G16570 Arabidopsis lyrata HOM05D002139 ORTHO05D002264 8.8e-07 58.5 89 43.8
TWI53G0030 Tripterygium wilfordii HOM05D002139 ORTHO05D002264 8.8e-07 58.5 43 62.8
AT5G06480 Arabidopsis thaliana HOM05D002139 ORTHO05D002264 1.1e-06 58.2 60 50.0
Manes.08G035400 Manihot esculenta HOM05D002139 ORTHO05D002264 1.1e-06 58.2 45 57.8
TAR633G0116 Trochodendron aralioides HOM05D002139 ORTHO05D002264 1.1e-06 58.2 40 65.0
Actinidia06185 Actinidia chinensis HOM05D002139 ORTHO05D002264 1.5e-06 57.8 40 65.0
AUR62030707 Chenopodium quinoa HOM05D002139 ORTHO05D002264 3.3e-06 56.6 39 64.1
Dinv31779 Davidia involucrata HOM05D002139 ORTHO05D002264 3.3e-06 56.6 48 56.2
Nn2g14365 Nelumbo nucifera HOM05D002139 ORTHO05D002264 3.3e-06 56.6 47 59.6
Cpa.g.sc1467.2 Carica papaya HOM05D002139 ORTHO05D002264 4.4e-06 56.2 48 56.2
CiPaw.10G019300 Carya illinoinensis HOM05D002139 ORTHO05D002264 4.4e-06 56.2 43 55.8
Eucgr.A02564 Eucalyptus grandis HOM05D002139 ORTHO05D002264 4.4e-06 56.2 41 61.0
Eucgr.K01917 Eucalyptus grandis HOM05D002139 ORTHO05D002264 4.4e-06 56.2 43 60.5
Os07g0159800 Oryza sativa ssp. japonica HOM05D002139 ORTHO05D002264 4.4e-06 56.2 57 49.1
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 5.7e-06 55.8 50 52.0
CANSAT64G0105 Cannabis sativa HOM05D002139 ORTHO05D002264 5.7e-06 55.8 45 55.6
CANSAT64G2342 Cannabis sativa HOM05D002139 ORTHO05D002264 5.7e-06 55.8 45 55.6
Phvul.007G266700 Phaseolus vulgaris HOM05D002139 ORTHO05D002264 5.7e-06 55.8 41 58.5
PGR142G1998 Punica granatum HOM05D002139 ORTHO05D002264 5.7e-06 55.8 41 61.0
Gohir.D07G117500 Gossypium hirsutum HOM05D002139 ORTHO05D002264 7.4e-06 55.5 66 51.5
Sc07g0006390 Simmondsia chinensis HOM05D002139 ORTHO05D002264 7.4e-06 55.5 39 61.5
BcaC06g32571 Brassica carinata HOM05D002139 ORTHO05D002264 9.7e-06 55.1 43 60.5
CSS0027061 Camellia sinensis var. sinensis HOM05D002139 ORTHO05D002264 9.7e-06 55.1 97 36.1
AUR62036347 Chenopodium quinoa HOM05D002139 ORTHO05D002264 9.7e-06 55.1 39 61.5
Gohir.D05G080300 Gossypium hirsutum HOM05D002139 ORTHO05D002264 9.7e-06 55.1 49 53.1
Gorai.001G126400 Gossypium raimondii HOM05D002139 ORTHO05D002264 9.7e-06 55.1 66 51.5
Gorai.009G082000 Gossypium raimondii HOM05D002139 ORTHO05D002264 9.7e-06 55.1 49 53.1


User provided reference genes

Program Settings