Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 5.3e-57 224.2 117 100.0
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 5.3e-57 224.2 117 100.0
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 5.3e-57 224.2 117 100.0
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 5.4e-33 144.4 119 69.7
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 2.7e-32 142.1 110 73.6
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 2.7e-32 142.1 110 73.6
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 2.7e-32 142.1 113 72.6
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 5.9e-32 141.0 110 72.7
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 1.3e-31 139.8 113 71.7
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 2.3e-31 139.0 110 71.8
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 2.3e-31 139.0 110 71.8
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 3.6e-29 131.7 104 72.1
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 5.8e-27 124.4 88 77.3
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 7.5e-27 124.0 79 84.8
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 2.9e-26 122.1 93 76.3
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 6.4e-26 120.9 79 83.5
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 3.2e-25 118.6 92 69.6
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 3.2e-25 118.6 75 85.3
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 5.4e-25 117.9 75 85.3
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 7.0e-25 117.5 77 80.5
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.0e-24 115.9 115 56.5
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 3.5e-24 115.2 92 68.5
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 4.6e-24 114.8 111 64.9
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 7.8e-24 114.0 101 60.4
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 7.8e-24 114.0 108 62.0
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 1.0e-23 113.6 91 70.3
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 1.0e-23 113.6 91 69.2
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 1.0e-23 113.6 92 67.4
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.3e-23 113.2 91 73.6
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.7e-23 112.8 115 54.8
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.7e-23 112.8 110 60.0
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 1.7e-23 112.8 99 63.6
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.7e-23 112.8 116 55.2
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 2.3e-23 112.5 104 60.6
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 3.0e-23 112.1 90 67.8
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 3.0e-23 112.1 90 67.8
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 3.9e-23 111.7 111 64.0
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 3.9e-23 111.7 90 67.8
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 3.9e-23 111.7 91 68.1
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 3.9e-23 111.7 100 61.0
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 5.0e-23 111.3 92 70.7
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 5.0e-23 111.3 92 70.7
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 5.0e-23 111.3 107 59.8
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 5.0e-23 111.3 87 69.0
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 6.6e-23 110.9 92 69.6
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 6.6e-23 110.9 92 69.6
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 6.6e-23 110.9 107 59.8
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 8.6e-23 110.5 107 57.9
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 8.6e-23 110.5 99 62.6
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 8.6e-23 110.5 108 62.0
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 8.6e-23 110.5 89 64.0
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 8.6e-23 110.5 99 58.6
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 8.6e-23 110.5 86 69.8
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 8.6e-23 110.5 90 67.8
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 1.1e-22 110.2 107 61.7
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 1.5e-22 109.8 109 59.6
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 1.5e-22 109.8 109 59.6
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 1.9e-22 109.4 104 59.6
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.9e-22 109.4 108 58.3
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 2.5e-22 109.0 86 67.4
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.5e-22 109.0 108 58.3
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 2.5e-22 109.0 90 67.8
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 3.3e-22 108.6 106 58.5
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 3.3e-22 108.6 86 67.4
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 3.3e-22 108.6 82 70.7
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 3.3e-22 108.6 100 57.0
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 3.3e-22 108.6 90 65.6
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 4.3e-22 108.2 100 61.0
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 4.3e-22 108.2 107 64.5
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 4.3e-22 108.2 104 58.7
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 4.3e-22 108.2 104 58.7
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 5.6e-22 107.8 105 60.0
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 5.6e-22 107.8 108 60.2
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 5.6e-22 107.8 79 73.4
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 5.6e-22 107.8 107 59.8
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 7.3e-22 107.5 85 68.2
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 9.5e-22 107.1 104 59.6
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.2e-21 106.7 109 56.0
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.2e-21 106.7 89 62.9
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.2e-21 106.7 108 58.3
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.2e-21 106.7 89 64.0
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 1.6e-21 106.3 71 74.6
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 1.6e-21 106.3 102 62.7
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 1.6e-21 106.3 88 63.6
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 2.1e-21 105.9 93 66.7
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 2.1e-21 105.9 86 69.8
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 2.1e-21 105.9 86 66.3
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 2.1e-21 105.9 86 66.3
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 2.8e-21 105.5 104 61.5
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 2.8e-21 105.5 87 62.1
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 3.6e-21 105.1 86 66.3
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 3.6e-21 105.1 100 59.0
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 3.6e-21 105.1 109 59.6
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.6e-21 105.1 108 57.4
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 3.6e-21 105.1 92 63.0
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 4.7e-21 104.8 68 77.9
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 4.7e-21 104.8 108 57.4
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 4.7e-21 104.8 108 57.4
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 4.7e-21 104.8 102 61.8
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 4.7e-21 104.8 103 58.3
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 4.7e-21 104.8 79 70.9
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 6.2e-21 104.4 105 57.1
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 8.0e-21 104.0 74 71.6
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 8.0e-21 104.0 95 60.0
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 1.1e-20 103.6 82 68.3
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.1e-20 103.6 107 57.0
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 1.4e-20 103.2 106 53.8
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 1.4e-20 103.2 107 57.9
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.8e-20 102.8 107 55.1
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.8e-20 102.8 92 64.1
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.3e-20 102.4 93 60.2
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.3e-20 102.4 93 60.2
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 3.1e-20 102.1 77 74.0
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.0e-20 101.7 87 64.4
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 4.0e-20 101.7 81 69.1
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 5.2e-20 101.3 86 67.4
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 6.8e-20 100.9 103 55.3
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 6.8e-20 100.9 76 71.1
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 8.9e-20 100.5 90 63.3
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.2e-19 100.1 96 62.5
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 1.2e-19 100.1 91 62.6
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 1.2e-19 100.1 86 64.0
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 2.0e-19 99.4 93 57.0
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 2.0e-19 99.4 108 54.6
A06p00520 Brassica napus HOM05D004222 ORTHO05D004982 2.6e-19 99.0 62 88.7
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 3.4e-19 98.6 100 56.0
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 3.4e-19 98.6 90 62.2
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.4e-19 98.2 89 61.8
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 5.8e-19 97.8 105 57.1
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 1.3e-18 96.7 104 51.9
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 4.9e-18 94.7 96 54.2
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 4.9e-18 94.7 88 62.5
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 1.1e-17 93.6 87 59.8
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 1.9e-17 92.8 101 51.5
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 2.4e-17 92.4 101 55.4
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 5.4e-17 91.3 88 61.4
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 7.0e-17 90.9 105 52.4
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 1.6e-16 89.7 94 52.1
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 4.6e-16 88.2 89 55.1
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 6.0e-16 87.8 106 50.0
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 1.7e-15 86.3 180 36.7
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 3.0e-15 85.5 108 49.1
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 1.1e-14 83.6 58 72.4
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.6e-13 79.7 79 60.8
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 1.6e-13 79.7 86 52.3
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 5.2e-12 74.7 116 39.7
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 5.2e-12 74.7 81 54.3
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 1.2e-11 73.6 99 45.5
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 1.3e-10 70.1 49 71.4
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.2e-10 69.3 85 45.9
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 9.2e-09 63.9 69 52.2
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.3e-07 60.1 82 46.3
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 5.1e-07 58.2 65 53.8


User provided reference genes

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