Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43326 Brassica carinata HOM05D005112 ORTHO05D006681 1.3e-34 149.1 72 100.0
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 7.4e-25 116.7 61 86.9
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 7.4e-25 116.7 61 86.9
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 7.4e-25 116.7 61 86.9
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 7.4e-25 116.7 61 86.9
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 7.4e-25 116.7 61 86.9
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 7.4e-25 116.7 61 86.9
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 1.0e-21 106.3 61 78.7
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 5.0e-21 104.0 61 75.4
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 8.4e-21 103.2 61 77.0
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 3.2e-20 101.3 61 73.8
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 3.2e-20 101.3 61 75.4
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 4.2e-20 100.9 61 73.8
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 2.1e-19 98.6 62 71.0
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 8.2e-16 86.7 61 59.0
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 5.9e-14 80.5 61 54.1
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 1.3e-13 79.3 59 61.0
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 2.9e-13 78.2 61 55.7
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 3.8e-13 77.8 61 55.7
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 2.5e-12 75.1 61 54.1
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 2.5e-12 75.1 60 60.0
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 3.2e-12 74.7 60 60.0
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 4.2e-12 74.3 61 52.5
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 4.2e-12 74.3 61 52.5
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 7.2e-12 73.6 61 52.5
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 7.2e-12 73.6 61 55.7
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 1.2e-11 72.8 61 52.5
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 1.6e-11 72.4 61 54.1
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 2.7e-11 71.6 61 50.8
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 4.6e-11 70.9 61 50.8
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 6.1e-11 70.5 61 50.8
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 6.1e-11 70.5 61 50.8
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 7.9e-11 70.1 58 53.4
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 1.4e-10 69.3 60 56.7
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 1.4e-10 69.3 61 52.5
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 1.8e-10 68.9 61 54.1
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 1.8e-10 68.9 61 54.1
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 1.8e-10 68.9 62 54.8
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 3.0e-10 68.2 61 50.8
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 3.9e-10 67.8 61 50.8
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 5.1e-10 67.4 61 49.2
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 8.8e-10 66.6 61 50.8
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 1.1e-09 66.2 57 50.9
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 1.1e-09 66.2 58 51.7
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 1.1e-09 66.2 58 55.2
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 1.1e-09 66.2 61 52.5
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 1.1e-09 66.2 59 54.2
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 2.0e-09 65.5 58 53.4
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 2.0e-09 65.5 58 55.2
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 2.0e-09 65.5 61 52.5
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 3.3e-09 64.7 57 50.9
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 8.2e-08 60.1 59 49.2
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 8.2e-08 60.1 61 45.9
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 8.2e-08 60.1 61 45.9
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 1.1e-07 59.7 61 49.2
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 1.1e-07 59.7 61 47.5
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 1.1e-07 59.7 61 44.3
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.1e-07 59.7 61 42.6
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 1.1e-07 59.7 58 51.7
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 1.8e-07 58.9 61 45.9
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 2.4e-07 58.5 58 50.0
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 2.4e-07 58.5 58 50.0
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 3.1e-07 58.2 63 46.0
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 3.1e-07 58.2 61 42.6
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 3.1e-07 58.2 58 48.3
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 3.1e-07 58.2 61 41.0
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 3.1e-07 58.2 61 41.0
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 4.1e-07 57.8 61 49.2
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 4.1e-07 57.8 61 45.9
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 5.3e-07 57.4 61 45.9
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 5.3e-07 57.4 60 46.7
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 5.3e-07 57.4 62 48.4
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 6.9e-07 57.0 61 41.0
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 6.9e-07 57.0 61 42.6
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 9.1e-07 56.6 58 48.3
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 9.1e-07 56.6 58 48.3
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 9.1e-07 56.6 61 41.0
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 1.2e-06 56.2 59 47.5
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 2.0e-06 55.5 61 45.9
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 2.0e-06 55.5 61 42.6
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 2.0e-06 55.5 42 59.5
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 2.0e-06 55.5 42 59.5
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 7.7e-06 53.5 69 42.0
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 7.7e-06 53.5 61 44.3
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 7.7e-06 53.5 42 59.5


User provided reference genes

Program Settings