Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 1.9e-176 622.5 333 100.0
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 2.3e-169 599.0 335 95.8
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 5.1e-169 597.8 333 96.1
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 1.4e-166 589.7 329 95.4
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 3.1e-166 588.6 329 94.8
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 5.2e-166 587.8 332 94.0
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 5.8e-165 584.3 335 94.3
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 3.7e-164 581.6 329 93.9
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 4.9e-164 581.3 329 93.6
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 4.1e-163 578.2 334 93.7
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 5.4e-163 577.8 327 94.2
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 9.2e-163 577.0 334 93.4
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 9.2e-163 577.0 334 93.4
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 1.6e-159 566.2 333 91.9
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 2.8e-159 565.5 311 96.5
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 2.2e-156 555.8 309 96.1
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 1.4e-155 553.1 366 83.9
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 1.3e-148 530.0 325 84.6
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 9.9e-141 503.8 293 90.4
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 1.4e-134 483.4 326 75.8
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 5.8e-133 478.0 330 75.8
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 1.7e-132 476.5 334 74.0
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 4.9e-132 474.9 325 76.3
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 3.2e-131 472.2 328 74.7
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 4.6e-130 468.4 327 74.3
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 1.0e-129 467.2 328 74.1
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 3.0e-129 465.7 329 72.3
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 3.9e-129 465.3 328 73.8
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 6.7e-129 464.5 333 73.3
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 1.1e-128 463.8 336 71.7
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 1.5e-128 463.4 317 75.4
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 1.9e-128 463.0 328 73.8
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 3.3e-128 462.2 328 73.5
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 3.3e-128 462.2 333 73.6
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 4.3e-128 461.8 328 73.2
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 4.3e-128 461.8 330 73.3
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 7.4e-128 461.1 327 72.8
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 1.3e-127 460.3 327 74.6
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 4.8e-127 458.4 327 71.9
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 6.2e-127 458.0 332 73.5
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 8.2e-127 457.6 334 73.4
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 1.8e-126 456.4 330 70.6
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 2.4e-126 456.1 329 72.6
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 2.4e-126 456.1 329 72.6
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 5.3e-126 454.9 331 71.3
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 9.0e-126 454.1 327 73.1
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 9.0e-126 454.1 329 72.0
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 9.0e-126 454.1 331 72.2
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 1.5e-125 453.4 327 72.5
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 2.2e-124 449.5 339 69.6
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 3.8e-124 448.7 330 70.3
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 1.4e-123 446.8 329 71.4
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 3.2e-123 445.7 334 70.7
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 1.6e-122 443.4 341 70.4
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 3.5e-122 442.2 335 69.6
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 4.6e-122 441.8 329 71.1
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 1.0e-121 440.7 311 73.6
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 8.7e-121 437.6 340 70.3
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 1.9e-120 436.4 333 67.9
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 2.5e-120 436.0 300 74.3
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 4.3e-120 435.3 329 69.6
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 4.3e-120 435.3 327 70.6
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 9.7e-120 434.1 331 68.0
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.6e-119 433.3 339 67.8
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 1.6e-119 433.3 300 74.0
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 2.2e-119 433.0 300 74.0
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 1.8e-118 429.9 332 68.1
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 2.4e-118 429.5 298 74.8
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 3.1e-118 429.1 334 67.7
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 3.1e-118 429.1 339 67.6
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 6.9e-118 427.9 329 68.1
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 2.6e-117 426.0 327 67.3
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 1.0e-116 424.1 365 63.6
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 5.0e-116 421.8 327 68.2
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 8.5e-116 421.0 327 68.2
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 4.2e-115 418.7 272 78.3
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.0e-113 414.1 326 69.3
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 1.4e-113 413.7 362 63.3
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 1.4e-113 413.7 335 65.1
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.3e-113 412.9 329 67.2
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 1.7e-111 406.8 352 65.3
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 2.2e-111 406.4 370 62.4
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 2.2e-111 406.4 339 66.7
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 6.3e-111 404.8 336 64.9
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 1.4e-110 403.7 326 67.2
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 2.4e-110 402.9 310 67.4
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 2.4e-110 402.9 314 69.4
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 4.1e-110 402.1 326 66.9
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 2.6e-109 399.4 272 75.0
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 1.3e-108 397.1 359 62.7
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 1.3e-108 397.1 330 63.9
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.7e-108 396.7 324 65.7
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 5.5e-107 391.7 340 62.4
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 9.4e-107 391.0 402 57.2
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 5.1e-105 385.2 300 69.7
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 1.7e-103 380.2 265 74.3
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 2.2e-103 379.8 281 70.1
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 1.5e-101 373.6 339 58.7
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 1.0e-100 370.9 301 63.8
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 2.7e-98 362.8 314 61.8
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 1.3e-95 354.0 241 76.8
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 6.3e-95 351.7 305 63.3
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 7.7e-93 344.7 197 92.4
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 1.0e-92 344.4 274 67.2
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 2.2e-92 343.2 329 59.6
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 7.2e-91 338.2 248 68.1
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 3.6e-90 335.9 214 79.9
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 1.4e-89 334.0 296 57.4
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 1.8e-89 333.6 300 57.0
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 4.5e-85 318.9 199 86.9
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 1.0e-84 317.8 234 74.4
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 8.5e-84 314.7 206 78.2
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 2.5e-83 313.2 208 77.9
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 1.5e-80 303.9 271 59.0
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 5.4e-78 295.4 231 69.7
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.0e-68 264.6 207 66.7
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 1.3e-63 247.7 167 76.6
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 1.2e-58 231.1 306 41.8
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 1.7e-47 194.1 137 73.7
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 3.2e-46 189.9 143 72.0
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 1.1e-43 181.4 297 41.1
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 1.6e-29 134.4 103 65.0
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 1.3e-26 124.8 90 68.9
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 4.0e-25 119.8 99 62.6
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 9.0e-25 118.6 247 37.2
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 7.6e-24 115.5 119 53.8
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 4.2e-22 109.8 95 63.2
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 1.2e-21 108.2 79 67.1
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 3.5e-21 106.7 89 67.4
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 6.7e-20 102.4 118 53.4
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.6e-16 90.5 62 79.0
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.9e-15 87.0 61 72.1
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.9e-15 87.0 62 72.6
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 4.9e-15 86.3 62 74.2
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 2.7e-13 80.5 106 45.3
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.0e-12 77.0 58 72.4
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.7e-12 75.9 55 74.5
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 4.3e-11 73.2 73 49.3
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 5.7e-11 72.8 68 51.5
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 9.6e-11 72.0 53 62.3
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 4.5e-08 63.2 45 64.4
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 5.8e-08 62.8 42 69.0
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 3.8e-07 60.1 35 77.1
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 3.8e-07 60.1 35 77.1
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 5.0e-07 59.7 37 78.4
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 5.0e-07 59.7 124 36.3


User provided reference genes

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