Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43210 Brassica carinata HOM05D003502 ORTHO05D010567 2.6e-68 261.9 130 100.0
BolC6t35637H Brassica oleracea HOM05D008752 ORTHO05D010567 5.0e-40 167.9 89 96.6
BraA06t23538Z Brassica rapa HOM05D008752 ORTHO05D010567 8.6e-40 167.2 85 100.0
A06p03270 Brassica napus HOM05D008752 ORTHO05D010567 3.3e-39 165.2 85 98.8
C06p05280 Brassica napus HOM05D008752 ORTHO05D010567 1.2e-33 146.7 77 94.8
BcaC08g43206 Brassica carinata HOM05D003502 ORTHO05D010567 1.3e-32 143.3 77 93.5
C06p05300 Brassica napus HOM05D003502 ORTHO05D010567 1.5e-28 129.8 69 95.7
Sp1g37070 Schrenkiella parvula HOM05D003502 ORTHO05D004250 9.9e-28 127.1 66 95.5
BcaC01g01220 Brassica carinata HOM05D003502 ORTHO05D004250 1.7e-27 126.3 66 93.9
A08p03270 Brassica napus HOM05D003502 ORTHO05D004250 1.7e-27 126.3 66 93.9
C03p89540 Brassica napus HOM05D003502 ORTHO05D004250 1.7e-27 126.3 66 93.9
BolC3t21268H Brassica oleracea HOM05D003502 ORTHO05D004250 1.7e-27 126.3 66 93.9
BraA08t32360Z Brassica rapa HOM05D003502 ORTHO05D004250 1.7e-27 126.3 66 93.9
BcaB04g17262 Brassica carinata HOM05D003502 ORTHO05D004250 3.7e-27 125.2 66 92.4
CARHR040300 Cardamine hirsuta HOM05D003502 ORTHO05D004250 8.3e-27 124.0 66 92.4
Thhalv10011182m.g Eutrema salsugineum HOM05D003502 ORTHO05D004250 8.3e-27 124.0 66 92.4
AT1G50240 Arabidopsis thaliana HOM05D003502 ORTHO05D004250 2.4e-26 122.5 66 90.9
AL1G57830 Arabidopsis lyrata HOM05D003502 ORTHO05D004250 7.1e-26 120.9 66 89.4
THA.LOC104811354 Tarenaya hassleriana HOM05D003502 ORTHO05D004250 6.0e-25 117.9 66 86.4
Carub.0001s3934 Capsella rubella HOM05D003502 ORTHO05D004250 7.8e-25 117.5 66 87.9
Aa31LG10G3970 Aethionema arabicum HOM05D003502 ORTHO05D004250 3.0e-24 115.5 66 84.8
BolC5t32137H Brassica oleracea HOM05D003502 ORTHO05D004250 4.7e-22 108.2 66 80.3
C05p34020 Brassica napus HOM05D003502 ORTHO05D004250 1.4e-21 106.7 66 78.8
BcaC05g27448 Brassica carinata HOM05D003502 ORTHO05D004250 1.2e-20 103.6 64 79.7
BolC6t35638H Brassica oleracea HOM05D003502 ORTHO05D010567 7.6e-20 100.9 60 85.0
Dinv29168 Davidia involucrata HOM05D003502 ORTHO05D004250 1.7e-19 99.8 66 75.8
CANSAT56G1789 Cannabis sativa HOM05D003502 ORTHO05D004250 2.2e-19 99.4 66 74.2
Lj3C889G13 Lonicera japonica HOM05D003502 ORTHO05D004250 2.2e-19 99.4 66 74.2
GSVIVG01024439001 Vitis vinifera HOM05D003502 ORTHO05D004250 2.9e-19 99.0 66 74.2
CiPaw.01G206800 Carya illinoinensis HOM05D003502 ORTHO05D004250 3.8e-19 98.6 66 74.2
MELO3C005424.2 Cucumis melo HOM05D003502 ORTHO05D004250 3.8e-19 98.6 66 75.8
Ciclev10000035m.g Citrus clementina HOM05D003502 ORTHO05D004250 4.9e-19 98.2 66 72.7
COL.COLO4_32890 Corchorus olitorius HOM05D003502 ORTHO05D004250 4.9e-19 98.2 66 74.2
Potri.019G052500 Populus trichocarpa HOM05D003502 ORTHO05D004250 4.9e-19 98.2 66 74.2
Sabra19G0056000 Salix brachista HOM05D003502 ORTHO05D004250 4.9e-19 98.2 66 74.2
Eucgr.A02961 Eucalyptus grandis HOM05D003502 ORTHO05D004250 6.4e-19 97.8 66 74.2
ClCG01G005070 Citrullus lanatus HOM05D003502 ORTHO05D004250 8.4e-19 97.4 66 74.2
CsaV3_5G005350 Cucumis sativus L. HOM05D003502 ORTHO05D004250 8.4e-19 97.4 66 74.2
Cfa013318 Carpinus fangiana HOM05D003502 ORTHO05D004250 1.1e-18 97.1 66 72.7
Haze_16219 Corylus avellana HOM05D003502 ORTHO05D004250 1.1e-18 97.1 66 72.7
QL06p046981 Quercus lobata HOM05D003502 ORTHO05D004250 1.1e-18 97.1 66 74.2
TWI60G0235 Tripterygium wilfordii HOM05D003502 ORTHO05D004250 1.1e-18 97.1 66 69.7
Manes.08G163900 Manihot esculenta HOM05D003502 ORTHO05D004250 1.4e-18 96.7 66 71.2
Rhsim03G0220800 Rhododendron simsii HOM05D003502 ORTHO05D004250 1.4e-18 96.7 66 71.2
Actinidia38803 Actinidia chinensis HOM05D003502 ORTHO05D004250 1.9e-18 96.3 66 71.2
Gohir.A05G409100 Gossypium hirsutum HOM05D003502 ORTHO05D004250 1.9e-18 96.3 66 72.7
Gohir.D04G006300 Gossypium hirsutum HOM05D003502 ORTHO05D004250 1.9e-18 96.3 66 72.7
Gorai.012G007900 Gossypium raimondii HOM05D003502 ORTHO05D004250 1.9e-18 96.3 66 72.7
Atru.chr8.760 Acer truncatum HOM05D003502 ORTHO05D004250 2.4e-18 95.9 66 71.2
Lsat_1_v5_gn_6_108521 Lactuca sativa HOM05D003502 ORTHO05D004250 2.4e-18 95.9 66 71.2
Lj6g0010845 Lotus japonicus HOM05D003502 ORTHO05D004250 2.4e-18 95.9 66 69.7
Nitab4.5_0000021g0390 Nicotiana tabacum HOM05D003502 ORTHO05D004250 2.4e-18 95.9 66 71.2
Nitab4.5_0005081g0060 Nicotiana tabacum HOM05D003502 ORTHO05D004250 2.4e-18 95.9 66 71.2
PSO339G0895 Papaver somniferum HOM05D003502 ORTHO05D004250 2.4e-18 95.9 66 72.7
PSO339G1860 Papaver somniferum HOM05D003502 ORTHO05D010567 2.4e-18 95.9 66 72.7
PSO384G3919 Papaver somniferum HOM05D003502 ORTHO05D004250 2.4e-18 95.9 66 72.7
PSO419G0001 Papaver somniferum HOM05D003502 ORTHO05D004250 2.4e-18 95.9 66 72.7
RcHm_v2.0_Chr1g0383891 Rosa chinensis HOM05D003502 ORTHO05D004250 2.4e-18 95.9 66 71.2
vmacro06503 Vaccinium macrocarpon HOM05D003502 ORTHO05D004250 3.2e-18 95.5 66 69.7
CSS0027375 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 4.2e-18 95.1 66 69.7
CSS0032069 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 4.2e-18 95.1 66 69.7
Prupe.2G324200 Prunus persica HOM05D003502 ORTHO05D004250 4.2e-18 95.1 66 71.2
Sopen03g027640 Solanum pennellii HOM05D003502 ORTHO05D004250 4.2e-18 95.1 66 71.2
PGSC0003DMG400000538 Solanum tuberosum HOM05D003502 ORTHO05D004250 4.2e-18 95.1 66 71.2
Actinidia21879 Actinidia chinensis HOM05D003502 ORTHO05D004250 7.1e-18 94.4 66 69.7
FvH4_7g33760 Fragaria vesca HOM05D003502 ORTHO05D004250 7.1e-18 94.4 66 69.7
FAN01G2009 Fragaria x ananassa HOM05D000067 ORTHO05D004250 7.1e-18 94.4 66 69.7
Sed0005246 Sechium edule HOM05D003502 ORTHO05D004250 7.1e-18 94.4 66 72.7
Cc02_g00380 Coffea canephora HOM05D003502 ORTHO05D004250 9.2e-18 94.0 66 71.2
TAR624G1438 Trochodendron aralioides HOM05D003502 ORTHO05D004250 9.2e-18 94.0 66 68.2
FAN03G0354 Fragaria x ananassa HOM05D003502 ORTHO05D004250 1.2e-17 93.6 66 69.7
FAN03G1761 Fragaria x ananassa HOM05D003502 ORTHO05D004250 1.2e-17 93.6 66 69.7
Glyma.20G069700 Glycine max HOM05D003502 ORTHO05D004250 1.2e-17 93.6 66 66.7
Phvul.007G241300 Phaseolus vulgaris HOM05D003502 ORTHO05D004250 1.2e-17 93.6 66 66.7
Prupe.3G137600 Prunus persica HOM05D003502 ORTHO05D004250 1.2e-17 93.6 66 71.2
Sed0020646 Sechium edule HOM05D003502 ORTHO05D004250 1.2e-17 93.6 66 71.2
FAN10G2252 Fragaria x ananassa HOM05D000067 ORTHO05D004250 2.1e-17 92.8 66 68.2
Thecc.10G089300 Theobroma cacao HOM05D003502 ORTHO05D004250 2.7e-17 92.4 66 68.2
VMungo0720G2129 Vigna mungo HOM05D003502 ORTHO05D004250 3.5e-17 92.0 66 65.2
Glyma.10G118100 Glycine max HOM05D003502 ORTHO05D004250 4.6e-17 91.7 66 65.2
MD07G1306200 Malus domestica HOM05D003502 ORTHO05D004250 4.6e-17 91.7 67 71.6
Duzib114G0543 Durio zibethinus HOM05D003502 ORTHO05D004250 7.8e-17 90.9 66 71.2
Lalb_Chr01g0010621 Lupinus albus HOM05D003502 ORTHO05D004250 7.8e-17 90.9 66 65.2
Psat6g094840 Pisum sativum HOM05D003502 ORTHO05D004250 7.8e-17 90.9 66 66.7
CAN.G303.73 Capsicum annuum HOM05D003502 ORTHO05D004250 1.0e-16 90.5 66 68.2
Nn1g07854 Nelumbo nucifera HOM05D003502 ORTHO05D004250 1.3e-16 90.1 66 65.2
ECA246G0536 Erigeron canadensis HOM05D003502 ORTHO05D004250 2.3e-16 89.4 66 66.7
MBI04_g06222_MAGBIO Magnolia biondii HOM05D003502 ORTHO05D004250 2.3e-16 89.4 66 62.1
Medtr1g048630 Medicago truncatula HOM05D003502 ORTHO05D004250 2.3e-16 89.4 66 65.2
AUR62019393 Chenopodium quinoa HOM05D003502 ORTHO05D004250 3.0e-16 89.0 66 63.6
Psat4g073680 Pisum sativum HOM05D003502 ORTHO05D004250 3.0e-16 89.0 66 65.2
Oeu010168.1 Olea europaea HOM05D003502 ORTHO05D004250 3.9e-16 88.6 66 65.2
arahy.Tifrunner.gnm1.ann1.FUJ27D Arachis hypogaea HOM05D003502 ORTHO05D004250 5.1e-16 88.2 66 63.6
arahy.Tifrunner.gnm1.ann1.KF4QTS Arachis hypogaea HOM05D003502 ORTHO05D004250 5.1e-16 88.2 66 63.6
DCAR_014574 Daucus carota HOM05D003502 ORTHO05D004250 5.1e-16 88.2 64 65.6
Migut.F01860 Erythranthe guttata HOM05D003502 ORTHO05D004250 5.1e-16 88.2 66 68.2
Peaxi162Scf00745g00858 Petunia axillaris HOM05D003502 ORTHO05D010567 5.1e-16 88.2 66 63.6
MD01G1234000 Malus domestica HOM05D003502 ORTHO05D004250 6.6e-16 87.8 67 70.1
Psat6g094880 Pisum sativum HOM05D003502 ORTHO05D004250 6.6e-16 87.8 66 65.2
Ca_25960_v3 Cicer arietinum L. HOM05D003502 ORTHO05D004250 1.1e-15 87.0 66 62.1
AUR62006100 Chenopodium quinoa HOM05D003502 ORTHO05D004250 1.5e-15 86.7 66 60.6
TPR.G19134 Trifolium pratense HOM05D003502 ORTHO05D004250 1.5e-15 86.7 66 63.6
Ah.07g205720 Amaranthus hybridus HOM05D003502 ORTHO05D004250 1.9e-15 86.3 66 62.1
Aqoxy7G00566 Aquilegia oxysepala HOM05D003502 ORTHO05D004250 2.5e-15 85.9 66 62.1
PGR042G1531 Punica granatum HOM05D003502 ORTHO05D004250 2.5e-15 85.9 65 69.2
SHI02509 Sapria himalayana HOM05D003502 ORTHO05D010567 2.5e-15 85.9 67 67.2
Hund20998 Selenicereus undatus HOM05D003502 ORTHO05D004250 9.6e-15 84.0 66 60.6
SGA_v2.0_scaffold283G47001 Striga asiatica HOM05D003502 ORTHO05D004250 1.6e-14 83.2 66 62.1
MSTRG.336 Avicennia marina HOM05D003502 ORTHO05D004250 2.1e-14 82.8 66 65.2
CDE06G0840 Ceratophyllum demersum HOM05D000250 ORTHO05D002477 3.6e-14 82.0 66 62.1
FAN10G2333 Fragaria x ananassa HOM05D003502 ORTHO05D004250 8.1e-14 80.9 76 55.3
HanXRQChr05g0148851 Helianthus annuus HOM05D003502 ORTHO05D004250 1.1e-13 80.5 65 60.0
SalBow6G5501 Salvia bowleyana HOM05D003502 ORTHO05D004250 1.4e-13 80.1 66 60.6
EL10Ac3g05293 Beta vulgaris HOM05D003502 ORTHO05D004250 4.0e-13 78.6 66 59.1
Os12g0433500 Oryza sativa ssp. japonica HOM05D003502 ORTHO05D004250 5.3e-13 78.2 66 59.1
SEGI_11487 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 9.0e-13 77.4 66 57.6
SEGI_34091 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 9.0e-13 77.4 66 57.6
Zm00001eb141360 Zea mays HOM05D003502 ORTHO05D004250 1.2e-12 77.0 66 56.1
CsaV3_5G005300 Cucumis sativus L. HOM05D003502 ORTHO05D010567 5.8e-12 74.7 65 58.5
HPP92_008318 Vanilla planifolia HOM05D003502 ORTHO05D004250 1.7e-11 73.2 66 53.0
ATR0561G216 Amborella trichopoda HOM05D003502 ORTHO05D004250 6.4e-11 71.2 66 50.0
AagrBONN_evm.TU.Sc2ySwM_344.1826 Anthoceros agrestis HOM05D003502 ORTHO05D004250 2.4e-10 69.3 67 53.7
Lsat_1_v5_gn_6_110460 Lactuca sativa HOM05D003502 ORTHO05D004250 5.4e-10 68.2 69 53.6
Lj2g0016050 Lotus japonicus HOM05D003502 ORTHO05D004250 7.1e-10 67.8 66 51.5
HanXRQChr17g0543411 Helianthus annuus HOM05D003502 ORTHO05D010567 1.6e-09 66.6 57 56.1
CANSAT21G0253 Cannabis sativa HOM05D003502 ORTHO05D004250 1.3e-08 63.5 69 49.3
Mapoly0102s0001 Marchantia polymorpha HOM05D003502 ORTHO05D004250 1.9e-07 59.7 66 50.0
Pp3c6_25960 Physcomitrium patens HOM05D003502 ORTHO05D004250 1.9e-07 59.7 63 52.4
AUR62029697 Chenopodium quinoa HOM05D003502 ORTHO05D004250 2.5e-07 59.3 75 48.0
Lj3A923T57 Lonicera japonica HOM05D003502 ORTHO05D004250 4.3e-07 58.5 38 76.3
EL10Ac1g00998 Beta vulgaris HOM05D003502 ORTHO05D004250 2.1e-06 56.2 66 40.9
ECA248G3707 Erigeron canadensis HOM05D003502 ORTHO05D004250 4.8e-06 55.1 66 47.0
HanXRQChr05g0148841 Helianthus annuus HOM05D003502 ORTHO05D004250 8.1e-06 54.3 83 39.8


User provided reference genes

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