Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 3.4e-32 141.0 67 100.0
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 1.1e-27 125.9 67 94.0
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 1.3e-23 112.5 66 80.3
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 1.7e-23 112.1 66 80.3
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 2.2e-23 111.7 66 78.8
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 2.9e-23 111.3 66 78.8
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 2.9e-23 111.3 66 78.8
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 2.9e-23 111.3 66 78.8
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 2.9e-23 111.3 66 78.8
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 3.8e-23 110.9 66 77.3
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 4.9e-23 110.5 66 78.8
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 6.4e-23 110.2 66 77.3
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 6.4e-23 110.2 66 77.3
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 8.4e-23 109.8 66 77.3
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 8.4e-23 109.8 66 77.3
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 1.9e-22 108.6 66 75.8
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 2.4e-22 108.2 66 75.8
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 3.2e-22 107.8 66 75.8
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 3.2e-22 107.8 66 75.8
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 4.2e-22 107.5 66 75.8
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.6e-21 105.5 66 75.8
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.1e-21 105.1 66 72.7
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 6.0e-21 103.6 66 72.7
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 5.1e-20 100.5 66 68.2
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 8.7e-20 99.8 66 71.2
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 5.6e-19 97.1 66 66.7
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 7.4e-19 96.7 66 65.2
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 7.4e-19 96.7 66 65.2
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 7.4e-19 96.7 66 69.7
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 1.3e-18 95.9 66 65.2
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 2.8e-18 94.7 66 65.2
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 2.8e-18 94.7 66 65.2
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 2.8e-18 94.7 66 69.7
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 3.6e-18 94.4 66 66.7
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 6.2e-18 93.6 66 62.1
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 6.2e-18 93.6 66 65.2
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 8.1e-18 93.2 66 68.2
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 8.1e-18 93.2 66 68.2
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 1.1e-17 92.8 66 63.6
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 1.1e-17 92.8 66 65.2
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.1e-17 92.8 56 75.0
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 1.4e-17 92.4 66 63.6
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 1.8e-17 92.0 66 63.6
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 1.8e-17 92.0 66 60.6
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 2.4e-17 91.7 66 62.1
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 3.1e-17 91.3 66 63.6
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 3.1e-17 91.3 66 63.6
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 3.1e-17 91.3 66 65.2
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 3.1e-17 91.3 66 63.6
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 4.0e-17 90.9 66 63.6
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 4.0e-17 90.9 66 63.6
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 5.3e-17 90.5 66 65.2
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 5.3e-17 90.5 66 63.6
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 5.3e-17 90.5 66 63.6
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 5.3e-17 90.5 66 63.6
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 5.3e-17 90.5 66 65.2
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 5.3e-17 90.5 66 63.6
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 5.3e-17 90.5 66 62.1
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 6.9e-17 90.1 66 62.1
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 6.9e-17 90.1 66 60.6
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 6.9e-17 90.1 66 62.1
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 9.0e-17 89.7 66 62.1
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 9.0e-17 89.7 66 62.1
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 9.0e-17 89.7 66 62.1
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 9.0e-17 89.7 66 62.1
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 1.2e-16 89.4 66 59.1
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 1.2e-16 89.4 66 60.6
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 1.2e-16 89.4 66 60.6
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.5e-16 89.0 66 60.6
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.5e-16 89.0 66 60.6
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 1.5e-16 89.0 66 59.1
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 1.5e-16 89.0 66 60.6
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 1.5e-16 89.0 66 59.1
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 2.0e-16 88.6 66 60.6
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 2.0e-16 88.6 66 62.1
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 2.6e-16 88.2 69 60.9
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 2.6e-16 88.2 66 62.1
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 2.6e-16 88.2 66 63.6
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 3.4e-16 87.8 66 60.6
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 3.4e-16 87.8 66 59.1
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 3.4e-16 87.8 66 60.6
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 3.4e-16 87.8 66 60.6
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 3.4e-16 87.8 66 60.6
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 4.5e-16 87.4 66 57.6
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 4.5e-16 87.4 66 57.6
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 5.8e-16 87.0 66 57.6
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 7.6e-16 86.7 66 59.1
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 7.6e-16 86.7 68 61.8
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 7.6e-16 86.7 66 60.6
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 9.9e-16 86.3 66 57.6
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 9.9e-16 86.3 67 58.2
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 1.3e-15 85.9 69 56.5
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 1.3e-15 85.9 66 57.6
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.7e-15 85.5 66 56.1
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 1.7e-15 85.5 67 61.2
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 1.7e-15 85.5 66 62.1
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 1.7e-15 85.5 66 59.1
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 1.7e-15 85.5 66 59.1
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 1.7e-15 85.5 66 59.1
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 2.2e-15 85.1 66 59.1
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 2.9e-15 84.7 66 56.1
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 2.9e-15 84.7 66 57.6
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 2.9e-15 84.7 64 60.9
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 2.9e-15 84.7 69 59.4
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 3.8e-15 84.3 66 60.6
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 3.8e-15 84.3 66 59.1
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 3.8e-15 84.3 67 56.7
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 6.4e-15 83.6 66 56.1
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 6.4e-15 83.6 66 56.1
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 6.4e-15 83.6 66 59.1
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 6.4e-15 83.6 66 57.6
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 8.4e-15 83.2 66 56.1
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 1.1e-14 82.8 67 58.2
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 1.1e-14 82.8 65 58.5
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 1.4e-14 82.4 67 59.7
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 2.4e-14 81.6 66 57.6
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 3.2e-14 81.3 69 56.5
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 3.2e-14 81.3 66 59.1
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 4.2e-14 80.9 66 56.1
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 5.5e-14 80.5 69 56.5
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 5.5e-14 80.5 66 57.6
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 9.3e-14 79.7 68 55.9
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 9.3e-14 79.7 68 55.9
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 3.5e-13 77.8 66 53.0
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 6.0e-13 77.0 66 56.1
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 1.8e-12 75.5 69 53.6
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 3.0e-12 74.7 66 50.0
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 3.9e-12 74.3 66 54.5
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 6.7e-12 73.6 66 53.0
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 6.2e-10 67.0 66 47.0
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 6.2e-10 67.0 66 47.0
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 9.0e-09 63.2 67 47.8
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 1.2e-08 62.8 67 49.3
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 5.8e-08 60.5 67 46.3
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 1.7e-07 58.9 39 66.7


User provided reference genes

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