Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 4.8e-31 137.1 66 100.0
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 1.9e-27 125.2 67 94.0
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 1.1e-19 99.4 66 75.8
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 1.5e-19 99.0 66 75.8
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 1.9e-19 98.6 66 74.2
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 2.5e-19 98.2 66 74.2
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 2.5e-19 98.2 66 74.2
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 2.5e-19 98.2 66 74.2
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 2.5e-19 98.2 66 74.2
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 3.3e-19 97.8 66 72.7
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 4.2e-19 97.4 66 74.2
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 5.5e-19 97.1 66 72.7
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 5.5e-19 97.1 66 72.7
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 7.2e-19 96.7 66 72.7
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 7.2e-19 96.7 66 72.7
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 9.5e-19 96.3 66 72.7
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 9.5e-19 96.3 66 72.7
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 1.6e-18 95.5 66 71.2
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 2.1e-18 95.1 66 71.2
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 3.6e-18 94.4 66 71.2
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.4e-17 92.4 66 71.2
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 1.8e-17 92.0 66 69.7
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.8e-17 92.0 66 68.2
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 3.4e-16 87.8 66 63.6
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 3.4e-16 87.8 65 63.1
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 7.5e-16 86.7 65 60.0
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 9.8e-16 86.3 65 60.0
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 2.8e-15 84.7 65 63.1
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 2.8e-15 84.7 65 61.5
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 3.7e-15 84.3 65 60.0
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 4.9e-15 84.0 65 60.0
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 6.3e-15 83.6 66 60.6
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 6.3e-15 83.6 66 60.6
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 6.3e-15 83.6 65 58.5
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 1.1e-14 82.8 65 56.9
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 1.1e-14 82.8 65 56.9
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 1.4e-14 82.4 67 61.2
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 1.8e-14 82.0 65 58.5
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 1.8e-14 82.0 65 56.9
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 1.8e-14 82.0 65 58.5
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 2.4e-14 81.6 65 58.5
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 3.1e-14 81.3 65 56.9
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 3.1e-14 81.3 65 56.9
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 3.1e-14 81.3 65 60.0
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 3.1e-14 81.3 65 60.0
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 4.1e-14 80.9 65 58.5
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 4.1e-14 80.9 67 59.7
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.1e-14 80.9 65 56.9
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 4.1e-14 80.9 67 58.2
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 4.1e-14 80.9 65 56.9
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 5.4e-14 80.5 65 56.9
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 5.4e-14 80.5 65 60.0
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 5.4e-14 80.5 65 58.5
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 5.4e-14 80.5 66 57.6
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 5.4e-14 80.5 65 58.5
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 5.4e-14 80.5 65 58.5
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 5.4e-14 80.5 65 56.9
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 5.4e-14 80.5 65 56.9
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 5.4e-14 80.5 65 56.9
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 5.4e-14 80.5 65 56.9
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 7.0e-14 80.1 65 56.9
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 7.0e-14 80.1 65 55.4
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 7.0e-14 80.1 65 56.9
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 7.0e-14 80.1 65 56.9
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 7.0e-14 80.1 65 55.4
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 7.0e-14 80.1 56 69.6
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 9.2e-14 79.7 65 56.9
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 9.2e-14 79.7 65 58.5
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 9.2e-14 79.7 65 55.4
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 9.2e-14 79.7 65 55.4
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 9.2e-14 79.7 65 55.4
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 1.2e-13 79.3 65 55.4
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 1.2e-13 79.3 65 55.4
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 1.2e-13 79.3 67 58.2
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 1.2e-13 79.3 63 57.1
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 2.0e-13 78.6 67 55.2
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 2.0e-13 78.6 65 56.9
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 2.7e-13 78.2 67 56.7
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 2.7e-13 78.2 65 56.9
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 2.7e-13 78.2 65 55.4
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 2.7e-13 78.2 67 53.7
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 2.7e-13 78.2 65 55.4
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 3.5e-13 77.8 67 56.7
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 3.5e-13 77.8 65 55.4
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 3.5e-13 77.8 65 55.4
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 4.5e-13 77.4 65 55.4
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 5.9e-13 77.0 65 52.3
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 7.8e-13 76.6 65 53.8
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 7.8e-13 76.6 65 53.8
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 7.8e-13 76.6 65 53.8
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 1.0e-12 76.3 66 54.5
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 1.0e-12 76.3 67 58.2
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 1.3e-12 75.9 65 55.4
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 1.3e-12 75.9 65 55.4
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 1.7e-12 75.5 67 53.7
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 2.3e-12 75.1 69 56.5
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 2.3e-12 75.1 67 55.2
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 2.9e-12 74.7 65 52.3
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 2.9e-12 74.7 66 54.5
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 2.9e-12 74.7 65 55.4
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 3.9e-12 74.3 66 53.0
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 3.9e-12 74.3 66 53.0
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 5.0e-12 73.9 66 53.0
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 5.0e-12 73.9 66 53.0
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 5.0e-12 73.9 66 53.0
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 6.6e-12 73.6 68 57.4
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 6.6e-12 73.6 65 53.8
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 8.6e-12 73.2 65 47.7
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 8.6e-12 73.2 66 53.0
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 8.6e-12 73.2 67 56.7
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 1.1e-11 72.8 69 52.2
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 1.1e-11 72.8 65 49.2
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 1.1e-11 72.8 66 53.0
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 1.1e-11 72.8 65 52.3
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 1.1e-11 72.8 65 50.8
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 1.5e-11 72.4 68 52.9
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 1.5e-11 72.4 68 52.9
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.5e-11 72.4 66 51.5
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 1.9e-11 72.0 64 53.1
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 2.5e-11 71.6 65 53.8
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 2.5e-11 71.6 69 55.1
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 5.6e-11 70.5 67 53.7
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 2.1e-10 68.6 70 54.3
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 2.1e-10 68.6 65 50.8
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 2.8e-10 68.2 69 52.2
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 2.8e-10 68.2 65 46.2
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 4.7e-10 67.4 69 52.2
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 3.1e-09 64.7 66 47.0
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.0e-08 62.0 65 44.6
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 4.4e-08 60.8 67 46.3
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 4.4e-08 60.8 67 46.3
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 1.7e-07 58.9 39 66.7
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 3.7e-07 57.8 67 47.8
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 6.4e-07 57.0 67 47.8


User provided reference genes

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