Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 1.3e-82 309.7 152 100.0
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 3.4e-80 301.6 150 98.7
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 3.4e-80 301.6 150 98.7
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 5.8e-80 300.8 148 99.3
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 5.8e-80 300.8 148 99.3
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 1.1e-78 296.6 148 98.0
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 1.1e-78 296.6 148 98.0
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 9.3e-78 293.5 150 95.3
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 7.9e-77 290.4 150 94.0
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 7.9e-77 290.4 150 94.0
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 1.8e-76 289.3 156 92.9
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 3.9e-76 288.1 150 93.3
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 5.1e-76 287.7 150 94.7
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 5.1e-76 287.7 146 96.6
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 6.7e-76 287.3 152 91.4
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 8.7e-76 287.0 152 91.4
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 8.7e-76 287.0 152 91.4
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 8.7e-76 287.0 152 91.4
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 8.7e-76 287.0 152 91.4
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 8.7e-76 287.0 152 91.4
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.5e-75 286.2 152 91.4
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 1.5e-75 286.2 152 91.4
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.5e-75 286.2 152 90.8
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 1.9e-75 285.8 152 91.4
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.9e-75 285.8 152 90.8
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.9e-75 285.8 152 90.8
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 2.5e-75 285.4 152 90.1
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 2.5e-75 285.4 152 90.1
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 2.5e-75 285.4 150 92.0
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 2.5e-75 285.4 152 91.4
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 3.3e-75 285.0 152 90.8
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 3.3e-75 285.0 152 90.8
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 3.3e-75 285.0 152 90.1
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.3e-75 284.6 152 91.4
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 4.3e-75 284.6 150 92.7
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 4.3e-75 284.6 152 91.4
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 4.3e-75 284.6 152 90.1
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 4.3e-75 284.6 152 90.1
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 5.6e-75 284.3 152 90.1
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 5.6e-75 284.3 152 90.1
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 7.4e-75 283.9 152 90.8
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 7.4e-75 283.9 152 90.1
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 7.4e-75 283.9 153 90.8
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 9.6e-75 283.5 152 89.5
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 9.6e-75 283.5 152 89.5
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 1.3e-74 283.1 152 91.4
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 1.3e-74 283.1 152 90.1
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 1.3e-74 283.1 150 90.7
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 1.3e-74 283.1 152 90.1
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 1.3e-74 283.1 152 90.1
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.3e-74 283.1 150 91.3
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 1.6e-74 282.7 153 90.8
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 1.6e-74 282.7 150 91.3
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 2.1e-74 282.3 150 92.0
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 2.1e-74 282.3 152 89.5
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.1e-74 282.3 152 90.1
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.1e-74 282.3 152 89.5
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 2.1e-74 282.3 154 89.6
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 2.1e-74 282.3 152 90.1
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 2.8e-74 282.0 152 89.5
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 2.8e-74 282.0 152 88.2
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 2.8e-74 282.0 150 90.0
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 2.8e-74 282.0 152 89.5
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 2.8e-74 282.0 152 89.5
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 3.7e-74 281.6 155 90.3
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 3.7e-74 281.6 152 88.2
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.7e-74 281.6 152 89.5
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 4.8e-74 281.2 153 89.5
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 4.8e-74 281.2 156 89.7
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 4.8e-74 281.2 137 99.3
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 6.2e-74 280.8 151 91.4
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.2e-74 280.8 149 89.3
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.2e-74 280.8 149 89.3
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 8.1e-74 280.4 152 88.8
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 8.1e-74 280.4 153 89.5
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 8.1e-74 280.4 152 87.5
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 1.1e-73 280.0 152 88.2
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.1e-73 280.0 151 91.4
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 1.4e-73 279.6 152 88.8
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.4e-73 279.6 150 90.7
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 1.4e-73 279.6 152 87.5
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.8e-73 279.3 151 90.1
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.8e-73 279.3 152 88.2
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 2.4e-73 278.9 156 89.1
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 2.4e-73 278.9 144 93.8
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 3.1e-73 278.5 152 87.5
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 3.1e-73 278.5 148 90.5
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 4.0e-73 278.1 148 89.9
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 5.3e-73 277.7 152 88.8
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.3e-73 277.7 152 86.2
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.3e-73 277.7 152 86.2
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.3e-73 277.7 152 86.2
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.3e-73 277.7 152 86.2
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.3e-73 277.7 152 86.2
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 5.3e-73 277.7 152 86.2
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 9.0e-73 276.9 148 89.2
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.2e-72 276.6 152 85.5
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 2.0e-72 275.8 153 87.6
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 2.0e-72 275.8 149 89.3
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 2.0e-72 275.8 149 89.3
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 3.4e-72 275.0 151 88.1
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 4.5e-72 274.6 149 88.6
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 4.5e-72 274.6 149 88.6
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 1.0e-71 273.5 150 87.3
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 2.2e-71 272.3 149 86.6
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 3.8e-71 271.6 151 89.4
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 6.5e-71 270.8 149 87.2
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 1.1e-70 270.0 148 87.8
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 1.9e-70 269.2 147 87.8
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 1.9e-70 269.2 147 87.8
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 2.5e-70 268.9 151 88.7
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 5.5e-70 267.7 143 88.8
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 4.6e-69 264.6 144 86.8
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 6.0e-69 264.2 143 88.1
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 6.7e-68 260.8 148 87.8
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 9.6e-67 256.9 143 86.0
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 1.6e-66 256.1 130 95.4
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 1.4e-65 253.1 138 87.7
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 3.1e-65 251.9 132 90.9
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 5.3e-65 251.1 147 83.7
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.2e-64 250.0 132 90.9
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 4.5e-64 248.1 132 89.4
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 5.9e-64 247.7 133 91.0
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 5.9e-64 247.7 133 91.0
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 5.9e-64 247.7 148 83.1
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 5.9e-64 247.7 130 90.8
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 7.6e-64 247.3 134 88.1
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.0e-63 246.9 132 88.6
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 2.2e-63 245.7 131 88.5
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 2.2e-63 245.7 130 90.0
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 5.0e-63 244.6 132 89.4
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 5.0e-63 244.6 128 91.4
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 6.5e-63 244.2 146 78.8
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.1e-62 243.4 130 90.0
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 1.1e-62 243.4 140 86.4
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 1.4e-62 243.0 145 82.8
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 2.5e-62 242.3 128 89.1
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 2.5e-62 242.3 132 87.1
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 2.5e-62 242.3 132 87.9
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 7.2e-62 240.7 134 87.3
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 9.3e-62 240.4 152 80.3
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 3.9e-60 235.0 130 86.2
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 1.5e-59 233.0 145 73.1
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 1.1e-57 226.9 144 71.5
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 6.9e-57 224.2 151 70.9
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 5.5e-54 214.5 157 70.7
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 3.0e-52 208.8 190 59.5
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.7e-50 203.0 144 71.5
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 2.8e-50 202.2 126 76.2
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.4e-49 199.9 116 81.9
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 8.5e-47 190.7 103 90.3
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 3.2e-46 188.7 115 87.0
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 3.2e-46 188.7 115 75.7
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 3.2e-46 188.7 103 89.3
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 3.6e-45 185.3 103 88.3
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.1e-41 171.8 87 92.0
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 4.7e-37 158.3 81 90.1
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 1.4e-36 156.8 87 80.5
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 1.1e-33 147.1 81 88.9
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.1e-33 147.1 131 61.1
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.9e-30 136.3 71 94.4
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 3.2e-30 135.6 74 81.1
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.2e-27 127.1 71 87.3
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 9.8e-27 124.0 71 85.9
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 4.8e-26 121.7 71 84.5
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 5.9e-24 114.8 75 74.7
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 3.8e-15 85.5 45 93.3
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 7.3e-14 81.3 46 84.8
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 3.4e-11 72.4 53 66.0


User provided reference genes

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