Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 2.1e-118 429.5 293 100.0
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 3.0e-109 399.1 280 99.6
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 6.7e-109 397.9 280 99.3
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 5.3e-106 388.3 280 97.5
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 7.0e-106 387.9 280 97.1
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 1.2e-105 387.1 280 97.1
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 1.6e-97 360.1 281 93.2
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 1.3e-96 357.1 281 91.8
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 4.1e-90 335.5 281 87.9
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 3.5e-89 332.4 281 87.9
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 1.0e-88 330.9 281 87.5
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 8.0e-86 321.2 289 73.7
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 3.4e-76 289.3 286 77.3
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 1.3e-64 250.8 280 75.4
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 1.3e-64 250.8 280 74.3
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 3.0e-64 249.6 283 75.6
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 1.1e-63 247.7 280 75.0
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 1.1e-63 247.7 280 74.6
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 3.3e-63 246.1 280 72.5
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 4.3e-63 245.7 281 74.4
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 4.3e-63 245.7 280 74.6
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 5.6e-63 245.4 286 70.3
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 9.5e-63 244.6 280 73.6
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 2.1e-62 243.4 283 72.1
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 2.8e-62 243.0 280 72.1
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 8.1e-62 241.5 281 71.5
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 8.1e-62 241.5 280 72.1
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 2.4e-61 240.0 280 73.9
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 4.0e-61 239.2 280 72.1
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 5.2e-61 238.8 288 69.4
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 6.8e-61 238.4 280 72.9
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 1.5e-60 237.3 280 71.8
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 2.0e-60 236.9 281 73.3
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 2.6e-60 236.5 288 68.8
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 5.8e-60 235.3 282 72.7
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 5.8e-60 235.3 282 72.7
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 9.9e-60 234.6 284 72.5
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 1.3e-59 234.2 281 74.0
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 2.2e-59 233.4 287 72.1
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 2.9e-59 233.0 284 72.2
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 3.8e-59 232.6 285 72.3
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 4.9e-59 232.3 291 68.4
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 6.4e-59 231.9 280 73.2
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 6.4e-59 231.9 281 72.6
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 1.2e-57 227.6 281 72.6
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 1.2e-57 227.6 281 71.2
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 2.7e-57 226.5 280 70.7
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 2.7e-57 226.5 280 70.7
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 4.6e-57 225.7 219 83.6
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 4.6e-57 225.7 280 71.1
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 6.0e-57 225.3 280 70.0
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 7.8e-57 224.9 274 73.0
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 1.0e-56 224.6 286 67.1
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 1.7e-56 223.8 308 66.6
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 2.3e-56 223.4 285 60.7
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.3e-56 223.4 294 68.4
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.3e-56 223.4 294 68.4
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 3.9e-56 222.6 281 71.9
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 3.9e-56 222.6 285 71.2
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 3.9e-56 222.6 291 64.6
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 5.1e-56 222.2 286 62.9
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 5.1e-56 222.2 226 82.7
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 6.6e-56 221.9 232 64.2
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 8.7e-56 221.5 290 67.9
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 8.7e-56 221.5 253 67.2
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 8.7e-56 221.5 286 70.6
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 3.3e-55 219.5 217 83.9
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 4.3e-55 219.2 287 66.2
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 7.3e-55 218.4 290 70.3
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 1.6e-54 217.2 261 62.5
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 2.1e-54 216.9 284 67.6
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 4.8e-54 215.7 292 67.1
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 6.2e-54 215.3 283 70.7
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 6.2e-54 215.3 316 43.7
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 6.9e-53 211.8 282 69.5
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 1.2e-52 211.1 281 57.3
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.0e-52 210.3 254 54.3
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 4.4e-52 209.1 283 68.2
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 7.6e-52 208.4 289 67.8
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 1.3e-51 207.6 194 85.1
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 4.9e-51 205.7 194 87.6
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 3.0e-48 196.4 227 64.8
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 1.1e-47 194.5 193 75.1
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 5.6e-47 192.2 216 64.4
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 9.6e-47 191.4 377 40.6
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 8.1e-46 188.3 214 65.0
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 7.6e-44 181.8 183 80.3
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 1.7e-43 180.6 220 71.4
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 3.5e-41 172.9 85 97.6
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.3e-38 164.5 217 52.1
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 6.9e-37 158.7 88 86.4
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 1.2e-36 157.9 86 86.0
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 4.5e-36 156.0 85 85.9
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.0e-35 154.8 85 85.9
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 2.2e-35 153.7 88 84.1
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 5.5e-34 149.1 88 80.7
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 5.5e-34 149.1 88 80.7
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 5.1e-32 142.5 249 43.4
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 2.7e-25 120.2 182 50.5
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 3.5e-25 119.8 189 63.5
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 1.5e-23 114.4 216 67.6
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 3.3e-23 113.2 129 52.7
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 2.2e-19 100.5 129 49.6
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 2.9e-19 100.1 129 50.4
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 4.2e-18 96.3 68 70.6
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 5.5e-18 95.9 143 54.5
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 3.3e-15 86.7 59 72.9
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 2.2e-14 84.0 181 48.1
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 1.0e-11 75.1 65 60.0
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 3.8e-11 73.2 43 79.1
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 5.0e-11 72.8 43 79.1
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 1.0e-08 65.1 88 50.0
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 8.8e-08 62.0 40 72.5
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 5.7e-07 59.3 52 55.8


User provided reference genes

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