Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41578 Brassica carinata HOM05D003202 ORTHO05D003534 2.3e-57 225.3 113 100.0
C08p45790 Brassica napus HOM05D003202 ORTHO05D003534 3.0e-57 224.9 112 100.0
BolC8t52132H Brassica oleracea HOM05D003202 ORTHO05D003534 1.4e-38 162.9 112 77.7
Sp1g12720 Schrenkiella parvula HOM05D003202 ORTHO05D003534 1.4e-30 136.3 112 65.2
BcaC05g25334 Brassica carinata HOM05D003202 ORTHO05D003534 1.0e-28 130.2 112 63.4
C05p12150 Brassica napus HOM05D003202 ORTHO05D003534 1.0e-28 130.2 112 63.4
BolC5t29968H Brassica oleracea HOM05D003202 ORTHO05D003534 1.0e-28 130.2 112 63.4
BcaB02g06485 Brassica carinata HOM05D003202 ORTHO05D003534 1.7e-28 129.4 112 62.5
CARHR014790 Cardamine hirsuta HOM05D003202 ORTHO05D003534 6.6e-28 127.5 112 58.9
AL1G26240 Arabidopsis lyrata HOM05D003202 ORTHO05D003534 1.5e-27 126.3 112 58.9
Thhalv10007659m.g Eutrema salsugineum HOM05D003202 ORTHO05D003534 1.9e-27 125.9 112 58.0
AT1G14350 Arabidopsis thaliana HOM05D003202 ORTHO05D003534 2.5e-27 125.6 112 58.9
BraA06t24217Z Brassica rapa HOM05D003202 ORTHO05D003534 4.3e-27 124.8 110 63.6
Carub.0001s1405 Capsella rubella HOM05D003202 ORTHO05D003534 4.3e-27 124.8 112 58.0
Sp2g13920 Schrenkiella parvula HOM05D003202 ORTHO05D003534 5.6e-27 124.4 112 58.9
CARHR145260 Cardamine hirsuta HOM05D003202 ORTHO05D003534 2.1e-26 122.5 112 57.1
A06p10350 Brassica napus HOM05D003202 ORTHO05D003534 2.8e-26 122.1 110 61.8
Thhalv10004109m.g Eutrema salsugineum HOM05D003202 ORTHO05D003534 3.6e-26 121.7 112 57.1
A06p43460 Brassica napus HOM05D003202 ORTHO05D003534 4.7e-26 121.3 112 57.1
BraA06t27231Z Brassica rapa HOM05D003202 ORTHO05D003534 4.7e-26 121.3 112 57.1
AT2G02820 Arabidopsis thaliana HOM05D003202 ORTHO05D003534 6.1e-26 120.9 112 57.1
BcaC06g31215 Brassica carinata HOM05D003202 ORTHO05D003534 6.1e-26 120.9 112 56.2
THA.LOC104824084 Tarenaya hassleriana HOM05D003202 ORTHO05D003534 1.0e-25 120.2 112 57.1
AL5G12030 Arabidopsis lyrata HOM05D003202 ORTHO05D003534 1.8e-25 119.4 112 57.1
Aa31LG2G7450 Aethionema arabicum HOM05D003202 ORTHO05D003534 1.2e-24 116.7 112 54.5
BcaB07g30321 Brassica carinata HOM05D003202 ORTHO05D003534 2.6e-24 115.5 112 54.5
BcaC06g34034 Brassica carinata HOM05D003202 ORTHO05D003534 2.6e-24 115.5 112 58.0
C07p33510 Brassica napus HOM05D003202 ORTHO05D003534 2.6e-24 115.5 112 58.0
BolC7t43861H Brassica oleracea HOM05D003202 ORTHO05D003534 2.6e-24 115.5 112 58.0
Carub.0005s0173 Capsella rubella HOM05D003202 ORTHO05D003534 3.4e-24 115.2 112 53.6
Duzib251G0052 Durio zibethinus HOM05D003202 ORTHO05D003534 4.9e-23 111.3 112 54.5
THA.LOC104805146 Tarenaya hassleriana HOM05D003202 ORTHO05D003534 1.4e-22 109.8 112 53.6
BcaC03g17170 Brassica carinata HOM05D003202 ORTHO05D003534 2.4e-22 109.0 113 54.9
Thecc.02G352100 Theobroma cacao HOM05D003202 ORTHO05D003534 2.4e-22 109.0 112 52.7
C02p50930 Brassica napus HOM05D003202 ORTHO05D003534 4.1e-22 108.2 113 54.0
Gohir.A13G072500 Gossypium hirsutum HOM05D003202 ORTHO05D003534 4.1e-22 108.2 112 51.8
A02p33130 Brassica napus HOM05D003202 ORTHO05D003534 5.4e-22 107.8 113 54.9
BraA02t08336Z Brassica rapa HOM05D003202 ORTHO05D003534 5.4e-22 107.8 113 54.0
COL.COLO4_22970 Corchorus olitorius HOM05D003202 ORTHO05D003534 5.4e-22 107.8 112 51.8
BolC2t11184H Brassica oleracea HOM05D003202 ORTHO05D003534 9.2e-22 107.1 113 54.0
Duzib268G1601 Durio zibethinus HOM05D003202 ORTHO05D003534 1.2e-21 106.7 112 51.8
Atru.chr11.1835 Acer truncatum HOM05D003202 ORTHO05D003534 2.7e-21 105.5 112 50.9
Ciclev10031405m.g Citrus clementina HOM05D003202 ORTHO05D003534 2.7e-21 105.5 112 50.9
Gohir.D13G072600 Gossypium hirsutum HOM05D003202 ORTHO05D003534 3.5e-21 105.1 112 50.9
Gorai.013G083300 Gossypium raimondii HOM05D003202 ORTHO05D003534 3.5e-21 105.1 112 50.9
QL03p064932 Quercus lobata HOM05D003202 ORTHO05D003534 4.6e-21 104.8 112 50.0
CANSAT64G1870 Cannabis sativa HOM05D003202 ORTHO05D003534 5.9e-21 104.4 112 50.9
Gohir.A03G098800 Gossypium hirsutum HOM05D003202 ORTHO05D003534 1.3e-20 103.2 112 49.1
Gohir.D02G114500 Gossypium hirsutum HOM05D003202 ORTHO05D003534 3.9e-20 101.7 112 48.2
Gorai.005G139500 Gossypium raimondii HOM05D003202 ORTHO05D003534 3.9e-20 101.7 112 48.2
GSVIVG01020038001 Vitis vinifera HOM05D003202 ORTHO05D003534 5.0e-20 101.3 112 47.3
Cpa.g.sc183.27 Carica papaya HOM05D003202 ORTHO05D003534 8.6e-20 100.5 112 49.1
RcHm_v2.0_Chr4g0440161 Rosa chinensis HOM05D003202 ORTHO05D003534 1.1e-19 100.1 112 48.2
Duzib248G0847 Durio zibethinus HOM05D003202 ORTHO05D003534 4.3e-19 98.2 112 48.2
Prupe.1G271100 Prunus persica HOM05D003202 ORTHO05D003534 5.6e-19 97.8 112 47.3
FvH4_4g31660 Fragaria vesca HOM05D003202 ORTHO05D003534 7.3e-19 97.4 112 47.3
FAN07G0867 Fragaria x ananassa HOM05D003202 ORTHO05D003534 7.3e-19 97.4 112 47.3
FAN12G1936 Fragaria x ananassa HOM05D003202 ORTHO05D003534 7.3e-19 97.4 112 47.3
FAN22G0720 Fragaria x ananassa HOM05D003202 ORTHO05D003534 7.3e-19 97.4 112 47.3
CiPaw.05G138200 Carya illinoinensis HOM05D003202 ORTHO05D003534 9.5e-19 97.1 112 46.4
FAN17G2873 Fragaria x ananassa HOM05D003202 ORTHO05D003534 9.5e-19 97.1 112 47.3
Manes.05G098700 Manihot esculenta HOM05D003202 ORTHO05D003534 1.2e-18 96.7 112 49.1
Sabra08G0113000 Salix brachista HOM05D003202 ORTHO05D003534 1.2e-18 96.7 112 46.4
CSS0022785 Camellia sinensis var. sinensis HOM05D003202 ORTHO05D003534 1.6e-18 96.3 112 48.2
Potri.008G148400 Populus trichocarpa HOM05D003202 ORTHO05D003534 2.1e-18 95.9 112 46.4
Cfa009008 Carpinus fangiana HOM05D003202 ORTHO05D003534 4.7e-18 94.7 113 47.8
Lj6C792T7 Lonicera japonica HOM05D003202 ORTHO05D003534 1.1e-17 93.6 112 45.5
Haze_12037 Corylus avellana HOM05D003202 ORTHO05D003534 1.4e-17 93.2 113 47.8
Sabra10G0065500 Salix brachista HOM05D003202 ORTHO05D003534 1.4e-17 93.2 112 45.5
Manes.01G188000 Manihot esculenta HOM05D003202 ORTHO05D003534 1.8e-17 92.8 112 48.2
CSS0015674 Camellia sinensis var. sinensis HOM05D003202 ORTHO05D003534 3.1e-17 92.0 112 43.8
Hma1.2p1_0598F.1_g186820 Hydrangea macrophylla HOM05D003202 ORTHO05D003534 5.2e-17 91.3 112 44.6
Potri.010G093000 Populus trichocarpa HOM05D003202 ORTHO05D003534 5.2e-17 91.3 112 45.5
Dinv34175 Davidia involucrata HOM05D003202 ORTHO05D003534 6.8e-17 90.9 112 43.8
TWI75G0627 Tripterygium wilfordii HOM05D003202 ORTHO05D003534 1.2e-16 90.1 112 44.6
Aa31LG1G690 Aethionema arabicum HOM05D003202 ORTHO05D003534 1.5e-16 89.7 103 48.5
CSS0013069 Camellia sinensis var. sinensis HOM05D003202 ORTHO05D003534 2.0e-16 89.4 112 42.9
Peaxi162Scf00503g00613 Petunia axillaris HOM05D003202 ORTHO05D003534 2.0e-16 89.4 112 42.0
CSS0005353 Camellia sinensis var. sinensis HOM05D003202 ORTHO05D003534 3.4e-16 88.6 112 42.9
Rhsim12G0131400 Rhododendron simsii HOM05D003202 ORTHO05D003534 4.4e-16 88.2 112 43.8
RhsimUnG0242100 Rhododendron simsii HOM05D003202 ORTHO05D003534 4.4e-16 88.2 112 43.8
Cc11_g13330 Coffea canephora HOM05D003202 ORTHO05D003534 5.8e-16 87.8 112 42.9
Dinv24972 Davidia involucrata HOM05D003202 ORTHO05D003534 5.8e-16 87.8 112 45.5
Lj3A1041G81 Lonicera japonica HOM05D003202 ORTHO05D003534 7.5e-16 87.4 112 42.0
Actinidia04029 Actinidia chinensis HOM05D003202 ORTHO05D003534 1.3e-15 86.7 110 44.5
Nitab4.5_0007777g0020 Nicotiana tabacum HOM05D003202 ORTHO05D003534 2.9e-15 85.5 112 41.1
SGA_v2.0_scaffold53G19435 Striga asiatica HOM05D003202 ORTHO05D003534 2.9e-15 85.5 112 42.9
Nitab4.5_0003062g0070 Nicotiana tabacum HOM05D003202 ORTHO05D003534 3.7e-15 85.1 112 41.1
Ah.03g135320 Amaranthus hybridus HOM05D003202 ORTHO05D003534 4.9e-15 84.7 108 46.3
CAN.G512.9 Capsicum annuum HOM05D003202 ORTHO05D003534 4.9e-15 84.7 112 42.0
Hma1.2p1_0028F.1_g017840 Hydrangea macrophylla HOM05D003202 ORTHO05D003534 4.9e-15 84.7 113 42.5
vmacro16338 Vaccinium macrocarpon HOM05D003202 ORTHO05D003534 6.4e-15 84.3 112 41.1
EL10Ac6g13174 Beta vulgaris HOM05D003202 ORTHO05D003534 8.3e-15 84.0 105 46.7
Eucgr.B03417 Eucalyptus grandis HOM05D003202 ORTHO05D003534 8.3e-15 84.0 112 42.9
Sed0001429 Sechium edule HOM05D003202 ORTHO05D003534 1.4e-14 83.2 112 42.9
ClCG05G024470 Citrullus lanatus HOM05D003202 ORTHO05D003534 2.4e-14 82.4 103 45.6
MELO3C012077.2 Cucumis melo HOM05D003202 ORTHO05D003534 2.4e-14 82.4 114 43.0
SalBow2G0575 Salvia bowleyana HOM05D003202 ORTHO05D003534 2.4e-14 82.4 112 40.2
SalBow2G2383 Salvia bowleyana HOM05D003202 ORTHO05D003534 2.4e-14 82.4 112 40.2
Phvul.002G088900 Phaseolus vulgaris HOM05D003202 ORTHO05D003534 3.2e-14 82.0 112 42.0
Solyc05g007160.3 Solanum lycopersicum HOM05D003202 ORTHO05D003534 3.2e-14 82.0 112 40.2
Sopen05g003120 Solanum pennellii HOM05D003202 ORTHO05D003534 3.2e-14 82.0 112 40.2
MSTRG.2355 Avicennia marina HOM05D003202 ORTHO05D003534 4.1e-14 81.6 112 42.0
Hund25259 Selenicereus undatus HOM05D003202 ORTHO05D003534 4.1e-14 81.6 105 45.7
Lj2g0000716 Lotus japonicus HOM05D003202 ORTHO05D003534 5.4e-14 81.3 112 42.0
MD16G1076100 Malus domestica HOM05D003202 ORTHO05D003534 7.0e-14 80.9 112 42.0
PGR119G0965 Punica granatum HOM05D003202 ORTHO05D003534 9.2e-14 80.5 113 43.4
VMungo1215G0151 Vigna mungo HOM05D003202 ORTHO05D003534 9.2e-14 80.5 112 40.2
CsaV3_5G032490 Cucumis sativus L. HOM05D003202 ORTHO05D003534 1.2e-13 80.1 114 43.0
PGSC0003DMG400025612 Solanum tuberosum HOM05D003202 ORTHO05D003534 1.2e-13 80.1 112 39.3
MSTRG.7819 Avicennia marina HOM05D003202 ORTHO05D003534 2.0e-13 79.3 112 41.1
MSTRG.683 Avicennia marina HOM05D003202 ORTHO05D003534 2.7e-13 79.0 112 41.1
CiPaw.06G082400 Carya illinoinensis HOM05D003202 ORTHO05D003534 2.7e-13 79.0 112 42.9
MD13G1075000 Malus domestica HOM05D003202 ORTHO05D003534 2.7e-13 79.0 91 49.5
Sed0020688 Sechium edule HOM05D003202 ORTHO05D003534 2.7e-13 79.0 112 41.1
AUR62028814 Chenopodium quinoa HOM05D003202 ORTHO05D003534 3.5e-13 78.6 103 44.7
DCAR_027399 Daucus carota HOM05D003202 ORTHO05D003534 3.5e-13 78.6 112 38.4
Glyma.02G019300 Glycine max HOM05D003202 ORTHO05D003534 3.5e-13 78.6 112 41.1
Lsat_1_v5_gn_8_53780 Lactuca sativa HOM05D003202 ORTHO05D003534 3.5e-13 78.6 113 39.8
Nn3g17166 Nelumbo nucifera HOM05D003202 ORTHO05D003534 3.5e-13 78.6 112 38.4
TPR.G4084 Trifolium pratense HOM05D003202 ORTHO05D003534 3.5e-13 78.6 112 39.3
TAR371G0708 Trochodendron aralioides HOM05D003202 ORTHO05D003534 3.5e-13 78.6 103 41.7
Psat2g121880 Pisum sativum HOM05D003202 ORTHO05D003534 4.6e-13 78.2 112 39.3
Lalb_Chr10g0098091 Lupinus albus HOM05D003202 ORTHO05D003534 6.0e-13 77.8 112 41.1
MBI02_g05732_MAGBIO Magnolia biondii HOM05D003202 ORTHO05D003534 6.0e-13 77.8 112 39.3
Sc14g0008310 Simmondsia chinensis HOM05D003202 ORTHO05D003534 7.8e-13 77.4 110 41.8
TAR374G1148 Trochodendron aralioides HOM05D003202 ORTHO05D003534 1.0e-12 77.0 103 43.7
AUR62005744 Chenopodium quinoa HOM05D003202 ORTHO05D003534 1.3e-12 76.6 103 43.7
Ca_04759_v3 Cicer arietinum L. HOM05D003202 ORTHO05D003534 1.3e-12 76.6 112 38.4
MBI05_g00392_MAGBIO Magnolia biondii HOM05D003202 ORTHO05D003534 1.3e-12 76.6 112 38.4
PSO591G0240 Papaver somniferum HOM05D003202 ORTHO05D003534 1.3e-12 76.6 112 38.4
PSO832G0571 Papaver somniferum HOM05D003202 ORTHO05D003534 1.3e-12 76.6 112 38.4
Medtr5g038910 Medicago truncatula HOM05D003202 ORTHO05D003534 1.7e-12 76.3 112 37.5
Glyma.01G044300 Glycine max HOM05D003202 ORTHO05D003534 2.3e-12 75.9 112 40.2
Migut.K00887 Erythranthe guttata HOM05D003202 ORTHO05D003534 3.0e-12 75.5 110 40.9
Nn4g23087 Nelumbo nucifera HOM05D003202 ORTHO05D003534 3.9e-12 75.1 103 41.7
ECA234G1152 Erigeron canadensis HOM05D003202 ORTHO05D003534 5.0e-12 74.7 112 37.5
Lalb_Chr04g0256211 Lupinus albus HOM05D003202 ORTHO05D003534 5.0e-12 74.7 112 39.3
Hund05899 Selenicereus undatus HOM05D003202 ORTHO05D003534 1.1e-11 73.6 103 41.7
Eucgr.G02522 Eucalyptus grandis HOM05D003202 ORTHO05D003534 1.5e-11 73.2 110 40.9
Ah.02g131270 Amaranthus hybridus HOM05D003202 ORTHO05D003534 3.3e-11 72.0 105 41.0
Glyma.08G298200 Glycine max HOM05D003202 ORTHO05D003534 7.3e-11 70.9 106 39.6
Psat3g183440 Pisum sativum HOM05D003202 ORTHO05D003534 9.5e-11 70.5 112 36.6
Oeu045418.2 Olea europaea HOM05D003202 ORTHO05D003534 1.6e-10 69.7 110 40.0
SGA_v2.0_scaffold87G26950 Striga asiatica HOM05D003202 ORTHO05D003534 1.6e-10 69.7 114 39.5
TAR629G1941 Trochodendron aralioides HOM05D003202 ORTHO05D003534 2.1e-10 69.3 110 38.2
DCAR_031036 Daucus carota HOM05D003202 ORTHO05D003534 3.6e-10 68.6 112 35.7
PGR102G2966 Punica granatum HOM05D003202 ORTHO05D003534 1.4e-09 66.6 112 37.5
SalBow8G2806 Salvia bowleyana HOM05D003202 ORTHO05D003534 1.4e-09 66.6 111 38.7
FAN07G0887 Fragaria x ananassa HOM05D003202 ORTHO05D003534 1.8e-09 66.2 66 57.6
arahy.Tifrunner.gnm1.ann1.WMRY2G Arachis hypogaea HOM05D003202 ORTHO05D003534 4.0e-09 65.1 112 36.6
arahy.Tifrunner.gnm1.ann1.TP47QD Arachis hypogaea HOM05D003202 ORTHO05D003534 5.2e-09 64.7 112 36.6
Migut.L01322 Erythranthe guttata HOM05D003202 ORTHO05D003534 5.2e-09 64.7 101 36.6
unitig_8.g3200 Utricularia gibba HOM05D003202 ORTHO05D003534 6.8e-09 64.3 118 40.7
HPP92_018584 Vanilla planifolia HOM05D003202 ORTHO05D003534 8.9e-09 63.9 102 40.2
Glyma.18G123600 Glycine max HOM05D003202 ORTHO05D003534 2.0e-08 62.8 106 37.7
Actinidia31195 Actinidia chinensis HOM05D003202 ORTHO05D003534 3.4e-08 62.0 40 75.0
Aqoxy3G03326 Aquilegia oxysepala HOM05D003202 ORTHO05D003534 7.5e-08 60.8 112 33.9
Lalb_Chr17g0340491 Lupinus albus HOM05D003202 ORTHO05D003534 2.9e-07 58.9 94 41.5
Oeu000624.1 Olea europaea HOM05D003202 ORTHO05D003534 2.9e-07 58.9 102 38.2
VMungo0251G2157 Vigna mungo HOM05D003202 ORTHO05D003534 3.7e-07 58.5 112 32.1
arahy.Tifrunner.gnm1.ann1.X2MKKS Arachis hypogaea HOM05D003202 ORTHO05D003534 6.4e-07 57.8 116 33.6
arahy.Tifrunner.gnm1.ann1.03W370 Arachis hypogaea HOM05D003202 ORTHO05D003534 8.3e-07 57.4 52 50.0
arahy.Tifrunner.gnm1.ann1.BY5KCT Arachis hypogaea HOM05D003202 ORTHO05D003534 8.3e-07 57.4 52 50.0
arahy.Tifrunner.gnm1.ann1.FBF79B Arachis hypogaea HOM05D003202 ORTHO05D003534 8.3e-07 57.4 43 62.8
arahy.Tifrunner.gnm1.ann1.XU3QCQ Arachis hypogaea HOM05D003202 ORTHO05D003534 8.3e-07 57.4 43 62.8
Phvul.003G067800 Phaseolus vulgaris HOM05D003202 ORTHO05D003534 8.3e-07 57.4 112 32.1
ATR0564G017 Amborella trichopoda HOM05D003202 ORTHO05D003534 5.4e-06 54.7 43 65.1
arahy.Tifrunner.gnm1.ann1.E3S8EN Arachis hypogaea HOM05D003202 ORTHO05D003534 9.2e-06 53.9 39 61.5
unitig_22.g6526 Utricularia gibba HOM05D003202 ORTHO05D003534 9.2e-06 53.9 38 68.4


User provided reference genes

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