Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41079 Brassica carinata HOM05D002270 ORTHO05D002866 3.5e-138 495.0 254 100.0
BcaNung06980 Brassica carinata HOM05D002270 ORTHO05D002866 4.2e-91 338.6 241 77.6
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 1.2e-90 337.0 241 77.6
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 1.2e-90 337.0 241 77.6
Sp5g22050 Schrenkiella parvula HOM05D002270 ORTHO05D002866 1.6e-90 336.7 235 77.9
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 4.7e-90 335.1 241 77.6
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 6.1e-90 334.7 235 78.3
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 7.9e-90 334.3 241 77.2
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 3.0e-89 332.4 235 77.0
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 3.0e-89 332.4 235 77.0
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 3.0e-89 332.4 239 74.9
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 6.7e-89 331.3 235 76.6
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 2.0e-88 329.7 240 75.0
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 6.5e-84 314.7 233 72.1
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 5.5e-75 285.0 235 66.8
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 7.2e-75 284.6 235 66.4
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 2.7e-69 266.2 234 60.3
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 5.9e-69 265.0 234 59.8
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 7.7e-69 264.6 241 59.3
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 7.7e-69 264.6 235 59.6
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 1.0e-68 264.2 234 59.8
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 1.3e-68 263.8 233 61.4
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 1.7e-68 263.5 234 60.7
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 5.0e-68 261.9 234 61.5
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 6.5e-68 261.5 234 61.1
Eucgr.J02835 Eucalyptus grandis HOM05D002270 ORTHO05D002866 6.5e-68 261.5 234 60.3
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 8.5e-68 261.2 234 60.3
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 1.5e-67 260.4 234 59.0
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 1.9e-67 260.0 237 60.3
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 1.9e-67 260.0 232 59.1
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 2.5e-67 259.6 233 61.4
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 3.2e-67 259.2 236 59.7
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 4.2e-67 258.8 234 59.0
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 4.2e-67 258.8 239 58.6
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 5.5e-67 258.5 237 59.5
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 5.5e-67 258.5 237 59.5
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 7.2e-67 258.1 232 59.9
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 9.4e-67 257.7 233 60.9
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 1.2e-66 257.3 232 60.3
Hma1.2p1_0291F.1_g115290 Hydrangea macrophylla HOM05D002270 ORTHO05D002866 2.1e-66 256.5 233 59.7
Sed0006033 Sechium edule HOM05D002270 ORTHO05D002866 2.1e-66 256.5 234 59.0
COL.COLO4_12564 Corchorus olitorius HOM05D002270 ORTHO05D002866 2.7e-66 256.1 237 59.1
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 3.6e-66 255.8 235 58.7
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 6.1e-66 255.0 237 59.1
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 8.0e-66 254.6 234 57.7
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 8.0e-66 254.6 232 59.9
MBI17_g19031_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D002866 1.0e-65 254.2 234 58.5
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 1.8e-65 253.4 233 58.8
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 4.0e-65 252.3 233 58.4
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 6.8e-65 251.5 233 58.8
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 6.8e-65 251.5 235 58.3
vmacro22216 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 6.8e-65 251.5 235 57.9
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 1.2e-64 250.8 225 61.3
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.2e-64 250.8 233 57.9
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 1.2e-64 250.8 236 56.8
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 1.5e-64 250.4 234 57.3
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 2.0e-64 250.0 232 57.8
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 3.4e-64 249.2 234 59.0
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 5.7e-64 248.4 233 57.5
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 9.8e-64 247.7 234 57.3
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 1.3e-63 247.3 235 56.6
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 1.7e-63 246.9 244 56.6
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 2.2e-63 246.5 234 57.3
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 2.8e-63 246.1 234 57.3
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 3.7e-63 245.7 234 57.3
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 3.7e-63 245.7 234 58.1
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 4.9e-63 245.4 235 57.4
CDE12G0817 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 6.3e-63 245.0 236 55.5
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 1.1e-62 244.2 233 57.5
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 1.1e-62 244.2 233 57.5
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 1.8e-62 243.4 243 56.0
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 1.8e-62 243.4 243 56.0
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 1.8e-62 243.4 232 57.3
Os10g0456900 Oryza sativa ssp. japonica HOM05D002270 ORTHO05D002866 2.4e-62 243.0 238 55.0
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 2.4e-62 243.0 235 56.6
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 2.4e-62 243.0 236 56.8
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 3.1e-62 242.7 240 55.4
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 4.1e-62 242.3 244 56.1
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 5.4e-62 241.9 233 57.5
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 5.4e-62 241.9 232 57.3
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 5.4e-62 241.9 237 56.1
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 5.4e-62 241.9 233 56.2
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 1.2e-61 240.7 244 54.9
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 1.2e-61 240.7 243 55.6
VMungo0464G0658 Vigna mungo HOM05D002270 ORTHO05D002866 1.6e-61 240.4 243 54.7
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 2.0e-61 240.0 223 57.8
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 2.7e-61 239.6 233 54.5
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 3.5e-61 239.2 232 56.5
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 4.5e-61 238.8 232 56.9
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 5.9e-61 238.4 244 53.7
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 5.9e-61 238.4 233 54.1
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 7.7e-61 238.0 236 55.1
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 7.7e-61 238.0 236 55.1
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 7.7e-61 238.0 236 55.1
Ah.08g216550 Amaranthus hybridus HOM05D002270 ORTHO05D002866 3.8e-60 235.7 243 54.7
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 8.6e-60 234.6 234 54.3
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 1.1e-59 234.2 290 47.2
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 2.1e-58 229.9 233 51.9
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 2.8e-58 229.6 227 55.1
QL03p018747 Quercus lobata HOM05D002270 ORTHO05D002866 5.2e-57 225.3 206 62.1
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 1.2e-56 224.2 276 47.5
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 1.2e-56 224.2 257 51.4
SEGI_29020 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 2.0e-56 223.4 240 50.4
TAR636G2258 Trochodendron aralioides HOM05D002270 ORTHO05D002866 4.4e-56 222.2 211 56.4
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 7.5e-56 221.5 234 47.9
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 2.4e-54 216.5 233 48.5
CBR_g741 Chara braunii HOM05D002270 ORTHO05D002866 1.6e-53 213.8 237 47.7
FAN09G1018 Fragaria x ananassa HOM05D002270 ORTHO05D002866 7.8e-53 211.5 201 57.7
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 8.6e-52 208.0 232 48.3
BcaB03g13736 Brassica carinata HOM05D002270 ORTHO05D002866 2.8e-50 203.0 216 62.0
SEGI_24649 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.8e-49 200.3 201 51.7
SEGI_09123 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 2.0e-48 196.8 201 51.7
VMungo1080G1592 Vigna mungo HOM05D002270 ORTHO05D002866 5.0e-44 182.2 221 49.3
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 1.3e-39 167.5 229 40.2
MCO14G006 Micromonas commoda HOM05D002270 ORTHO05D002866 6.0e-37 158.7 236 39.0
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 7.8e-37 158.3 266 38.0
Aqoxy6G02932 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 4.7e-34 149.1 140 57.1
BolC8t51649H Brassica oleracea HOM05D002270 ORTHO05D002866 1.5e-32 144.1 74 100.0
TPR.G51 Trifolium pratense HOM05D002270 ORTHO05D002866 1.2e-26 124.4 112 58.9
ECA067G0003 Erigeron canadensis HOM05D002270 ORTHO05D002866 3.6e-26 122.9 76 78.9
SMO141G0258 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 2.6e-24 116.7 74 70.3
TPR.G582 Trifolium pratense HOM05D002270 ORTHO05D002866 5.1e-20 102.4 77 67.5
Medtr8g019250 Medicago truncatula HOM05D002270 ORTHO05D002866 7.1e-14 82.0 57 68.4
PGSC0003DMG400044228 Solanum tuberosum HOM05D002270 ORTHO05D002866 1.0e-12 78.2 54 75.9
Sp5g22070 Schrenkiella parvula HOM05D002270 ORTHO05D002866 5.1e-12 75.9 40 95.0
SMO141G0084 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 5.1e-12 75.9 58 55.2
BcaC05g27865 Brassica carinata HOM05D001285 ORTHO05D000199 8.1e-10 68.6 99 47.5
C05p38670 Brassica napus HOM05D002270 ORTHO05D002866 2.4e-09 67.0 39 87.2


User provided reference genes

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