Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40922 Brassica carinata HOM05D000667 ORTHO05D004096 3.9e-44 181.0 88 100.0
C08p39180 Brassica napus HOM05D000667 ORTHO05D004096 7.4e-35 150.2 88 86.4
BolC8t51491H Brassica oleracea HOM05D000667 ORTHO05D004096 7.4e-35 150.2 88 86.4
Carub.0004s0390 Capsella rubella HOM05D000667 ORTHO05D004096 2.9e-31 138.3 88 78.4
A09p56230 Brassica napus HOM05D000667 ORTHO05D004096 3.8e-31 137.9 90 81.1
BraA09t41017Z Brassica rapa HOM05D000667 ORTHO05D004096 3.8e-31 137.9 90 81.1
AL4G15090 Arabidopsis lyrata HOM05D000667 ORTHO05D004096 5.3e-25 117.5 88 69.3
Sp4g03540 Schrenkiella parvula HOM05D000667 ORTHO05D004096 1.5e-24 115.9 88 69.3
Thhalv10000205m.g Eutrema salsugineum HOM05D000667 ORTHO05D004096 4.9e-23 110.9 130 51.5
Thecc.09G007600 Theobroma cacao HOM05D000667 ORTHO05D004096 4.2e-22 107.8 88 56.8
CARHR117500 Cardamine hirsuta HOM05D000667 ORTHO05D004096 7.1e-22 107.1 88 63.6
Duzib187G0973 Durio zibethinus HOM05D000667 ORTHO05D004096 9.3e-22 106.7 88 56.8
AT2G24540 Arabidopsis thaliana HOM05D000667 ORTHO05D004096 1.6e-21 105.9 88 62.5
Cpa.g.sc23.19 Carica papaya HOM05D000667 ORTHO05D004096 7.9e-21 103.6 88 55.7
COL.COLO4_19029 Corchorus olitorius HOM05D000667 ORTHO05D004096 7.9e-21 103.6 88 54.5
Gohir.A05G064100 Gossypium hirsutum HOM05D000667 ORTHO05D004096 3.9e-20 101.3 88 55.7
Manes.15G098200 Manihot esculenta HOM05D000667 ORTHO05D004096 5.1e-20 100.9 88 53.4
CiPaw.07G212200 Carya illinoinensis HOM05D000667 ORTHO05D004096 1.1e-19 99.8 88 58.0
TWI34G0704 Tripterygium wilfordii HOM05D000667 ORTHO05D004096 1.5e-19 99.4 88 56.8
FAN20G2017 Fragaria x ananassa HOM05D000667 ORTHO05D004096 2.5e-19 98.6 88 54.5
Haze_21754 Corylus avellana HOM05D000667 ORTHO05D004096 4.3e-19 97.8 88 51.1
Gorai.009G067500 Gossypium raimondii HOM05D000667 ORTHO05D004096 4.3e-19 97.8 88 53.4
FAN27G0657 Fragaria x ananassa HOM05D000667 ORTHO05D004096 7.4e-19 97.1 88 53.4
Ciclev10008681m.g Citrus clementina HOM05D000667 ORTHO05D004096 9.7e-19 96.7 88 52.3
CiPaw.07G212000 Carya illinoinensis HOM05D000667 ORTHO05D004096 1.3e-18 96.3 88 55.7
FvH4_2g36671 Fragaria vesca HOM05D000667 ORTHO05D004096 1.3e-18 96.3 88 52.3
Gohir.D05G066701 Gossypium hirsutum HOM05D000667 ORTHO05D004096 1.6e-18 95.9 88 52.3
FAN15G0719 Fragaria x ananassa HOM05D000667 ORTHO05D004096 8.2e-18 93.6 88 51.1
Potri.018G007100 Populus trichocarpa HOM05D000667 ORTHO05D004096 1.1e-17 93.2 88 51.1
RcHm_v2.0_Chr6g0305031 Rosa chinensis HOM05D000667 ORTHO05D004096 6.9e-17 90.5 90 51.1
Sabra18G0014800 Salix brachista HOM05D000667 ORTHO05D004096 4.5e-16 87.8 89 49.4
MBI14_g22131_MAGBIO Magnolia biondii HOM05D000667 ORTHO05D004096 1.0e-15 86.7 88 48.9
TWI75G0786 Tripterygium wilfordii HOM05D000667 ORTHO05D004096 1.3e-15 86.3 88 46.6
Atru.chr7.2649 Acer truncatum HOM05D000667 ORTHO05D004096 2.2e-15 85.5 88 45.5
Glyma.06G076900 Glycine max HOM05D000667 ORTHO05D004096 1.1e-14 83.2 91 44.0
MD08G1127900 Malus domestica HOM05D000667 ORTHO05D004096 1.9e-14 82.4 88 46.6
PGR044G0476 Punica granatum HOM05D000667 ORTHO05D004096 1.6e-13 79.3 89 44.9
Lalb_Chr23g0269131 Lupinus albus HOM05D000667 ORTHO05D004096 4.6e-13 77.8 92 41.3
Prupe.1G459700 Prunus persica HOM05D000667 ORTHO05D004096 4.6e-13 77.8 90 47.8
Glyma.04G075700 Glycine max HOM05D000667 ORTHO05D004096 1.8e-12 75.9 93 40.9
Medtr3g108860 Medicago truncatula HOM05D000667 ORTHO05D004096 3.9e-12 74.7 88 40.9
VMungo1309G0228 Vigna mungo HOM05D000667 ORTHO05D004096 3.9e-12 74.7 97 38.1
Psat0s1809g0080 Pisum sativum HOM05D000667 ORTHO05D004096 5.1e-12 74.3 88 40.9
Ca_15665_v3 Cicer arietinum L. HOM05D000667 ORTHO05D004096 1.1e-11 73.2 89 40.4
Nn2g12659 Nelumbo nucifera HOM05D000667 ORTHO05D004096 1.1e-11 73.2 89 42.7
CANSAT25G0354 Cannabis sativa HOM05D000667 ORTHO05D004096 2.0e-11 72.4 95 41.1
GSVIVG01035518001 Vitis vinifera HOM05D000667 ORTHO05D004096 2.5e-11 72.0 92 43.5
QL12p025198 Quercus lobata HOM05D000667 ORTHO05D004096 1.3e-10 69.7 86 41.9
MD15G1107400 Malus domestica HOM05D000667 ORTHO05D004096 1.7e-10 69.3 88 42.0
Lj1g0003153 Lotus japonicus HOM05D000667 ORTHO05D004096 2.8e-10 68.6 104 35.6
Aqoxy7G03123 Aquilegia oxysepala HOM05D000667 ORTHO05D004096 4.8e-10 67.8 85 41.2
TAR625G0547 Trochodendron aralioides HOM05D000667 ORTHO05D004096 4.8e-10 67.8 89 40.4
ATR0580G133 Amborella trichopoda HOM05D000667 ORTHO05D004096 9.1e-09 63.5 88 42.0
Nn8g40514 Nelumbo nucifera HOM05D000667 ORTHO05D004096 3.4e-08 61.6 57 49.1
Phvul.009G101500 Phaseolus vulgaris HOM05D000667 ORTHO05D004096 5.9e-08 60.8 77 40.3
SEGI_00935 Sequoiadendron giganteum HOM05D000667 ORTHO05D004096 7.7e-08 60.5 68 39.7
Duzib160G0105 Durio zibethinus HOM05D000667 ORTHO05D004096 2.9e-07 58.5 93 34.4
Atru.chr10.1214 Acer truncatum HOM05D000667 ORTHO05D004096 6.5e-07 57.4 92 33.7
HanXRQChr11g0341261 Helianthus annuus HOM05D000667 ORTHO05D004096 6.5e-07 57.4 91 36.3
COL.COLO4_31061 Corchorus olitorius HOM05D000667 ORTHO05D004096 1.4e-06 56.2 95 33.7
Lsat_1_v5_gn_4_29341 Lactuca sativa HOM05D000667 ORTHO05D004096 1.4e-06 56.2 94 31.9
Rhsim13G0114300 Rhododendron simsii HOM05D000667 ORTHO05D004096 1.4e-06 56.2 98 34.7
arahy.Tifrunner.gnm1.ann1.1Y4NGA Arachis hypogaea HOM05D000667 ORTHO05D004096 1.9e-06 55.8 101 31.7
arahy.Tifrunner.gnm1.ann1.AAI9J8 Arachis hypogaea HOM05D000667 ORTHO05D004096 1.9e-06 55.8 101 31.7
Cfa013278 Carpinus fangiana HOM05D002778 ORTHO05D003112 1.9e-06 55.8 57 47.4
CDE05G0359 Ceratophyllum demersum HOM05D000667 ORTHO05D004096 2.5e-06 55.5 80 36.2
Lalb_Chr18g0055381 Lupinus albus HOM05D000667 ORTHO05D004096 2.5e-06 55.5 95 35.8
PGR042G2716 Punica granatum HOM05D000667 ORTHO05D004096 2.5e-06 55.5 95 32.6
Psat1g188160 Pisum sativum HOM05D000667 ORTHO05D004096 3.2e-06 55.1 95 32.6
ECA234G3936 Erigeron canadensis HOM05D000667 ORTHO05D004096 4.2e-06 54.7 96 33.3
TWI73G0887 Tripterygium wilfordii HOM05D000667 ORTHO05D004096 5.5e-06 54.3 95 31.6
CiPaw.09G122700 Carya illinoinensis HOM05D000667 ORTHO05D004096 7.2e-06 53.9 91 31.9
Duzib235G0040 Durio zibethinus HOM05D000667 ORTHO05D004096 7.2e-06 53.9 93 32.3
Gohir.D09G077366 Gossypium hirsutum HOM05D000667 ORTHO05D004096 9.4e-06 53.5 95 32.6
Gohir.D09G077500 Gossypium hirsutum HOM05D000667 ORTHO05D004096 9.4e-06 53.5 95 32.6
Gorai.006G092600 Gossypium raimondii HOM05D000667 ORTHO05D004096 9.4e-06 53.5 95 32.6
Zm00001eb300170 Zea mays HOM05D000667 ORTHO05D004096 9.4e-06 53.5 97 35.1


User provided reference genes

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