Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 1.2e-195 686.4 361 100.0
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 3.5e-184 648.3 361 96.1
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 3.5e-184 648.3 361 96.1
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 5.1e-183 644.4 361 95.6
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 6.9e-180 634.0 361 93.9
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 3.8e-178 628.2 361 93.9
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.1e-174 616.7 361 90.0
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 8.4e-170 600.5 355 89.0
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 2.1e-168 595.9 354 88.7
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 3.5e-168 595.1 354 88.4
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 4.6e-168 594.7 354 88.4
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 4.6e-168 594.7 354 88.4
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 7.9e-168 594.0 354 88.1
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 8.7e-167 590.5 361 86.7
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 4.1e-164 581.6 362 85.9
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 1.1e-161 573.5 361 84.2
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 5.1e-159 564.7 361 82.8
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.1e-158 563.5 358 83.0
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 1.3e-157 560.1 356 83.1
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.7e-157 558.5 354 83.1
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 1.4e-156 556.6 354 82.8
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 7.7e-155 550.8 338 86.1
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 5.5e-153 544.7 337 83.7
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.2e-152 543.5 337 83.1
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.1e-152 542.7 353 79.9
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.4e-151 540.0 353 79.9
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 1.8e-151 539.7 351 79.8
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 3.0e-151 538.9 341 82.7
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 6.7e-151 537.7 353 80.2
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 1.1e-150 537.0 337 82.2
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 2.6e-150 535.8 354 78.8
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 2.6e-150 535.8 340 81.8
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 4.4e-150 535.0 335 80.9
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 7.4e-150 534.3 351 79.2
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 9.7e-150 533.9 334 81.7
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 2.2e-149 532.7 335 81.5
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 2.8e-149 532.3 335 81.2
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 3.7e-149 531.9 350 78.6
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 3.7e-149 531.9 356 78.7
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 8.2e-149 530.8 353 79.0
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 1.4e-148 530.0 347 78.4
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 1.8e-148 529.6 354 79.4
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 1.8e-148 529.6 335 80.6
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 2.4e-148 529.3 358 77.7
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 3.1e-148 528.9 356 78.4
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 4.1e-148 528.5 358 76.5
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 4.1e-148 528.5 356 77.5
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 5.3e-148 528.1 353 78.5
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.6e-147 526.6 345 78.8
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 2.0e-147 526.2 353 78.5
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 2.0e-147 526.2 348 78.7
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 3.5e-147 525.4 345 78.8
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 3.5e-147 525.4 341 79.8
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 7.7e-147 524.2 333 79.9
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 7.7e-147 524.2 356 75.8
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.3e-146 523.5 354 77.4
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.3e-146 523.5 354 77.4
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.7e-146 523.1 345 77.7
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 2.2e-146 522.7 342 78.4
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 2.2e-146 522.7 355 77.5
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.9e-146 522.3 355 77.5
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 2.9e-146 522.3 334 78.7
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 3.8e-146 521.9 347 77.5
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 3.8e-146 521.9 335 79.4
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 6.5e-146 521.2 335 80.3
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 3.2e-145 518.8 334 78.1
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 4.2e-145 518.5 337 78.6
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 9.4e-145 517.3 331 79.8
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.6e-144 516.5 354 76.8
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.6e-144 515.4 335 80.0
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.6e-144 515.4 342 77.5
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 3.6e-144 515.4 342 77.5
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 4.7e-144 515.0 342 77.8
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.8e-143 513.1 372 74.2
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 4.0e-143 511.9 390 70.8
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 6.7e-143 511.1 336 78.6
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 8.8e-143 510.8 340 77.9
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 2.6e-142 509.2 356 78.4
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 2.6e-142 509.2 343 76.4
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 3.3e-142 508.8 363 73.3
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 4.8e-141 505.0 335 77.0
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 1.4e-140 503.4 375 70.9
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 1.4e-140 503.4 370 72.2
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 2.4e-140 502.7 353 74.5
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 1.2e-139 500.4 353 74.2
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 2.0e-139 499.6 352 75.6
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 2.0e-139 499.6 357 75.9
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 2.7e-139 499.2 360 73.6
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 4.5e-139 498.4 339 75.8
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 1.3e-138 496.9 349 73.6
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 3.8e-138 495.4 335 74.6
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 8.5e-138 494.2 337 75.4
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 1.5e-137 493.4 354 73.2
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 1.5e-137 493.4 361 73.4
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 1.9e-137 493.0 339 74.9
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 2.5e-137 492.7 335 74.9
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 2.5e-137 492.7 341 74.8
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 3.2e-137 492.3 343 73.8
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 5.5e-137 491.5 353 73.1
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 1.4e-135 486.9 361 71.7
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 2.3e-135 486.1 341 73.6
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 5.2e-135 485.0 354 72.6
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 6.8e-135 484.6 404 64.9
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 3.4e-134 482.3 308 79.5
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 9.8e-134 480.7 304 81.6
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 7.0e-132 474.6 384 67.7
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 9.1e-132 474.2 360 70.8
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 3.2e-129 465.7 331 69.5
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 8.0e-128 461.1 407 62.9
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 5.2e-127 458.4 338 71.6
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 8.8e-127 457.6 337 72.4
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 9.8e-126 454.1 366 66.1
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 2.2e-125 453.0 359 72.4
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 3.7e-125 452.2 295 78.3
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 3.4e-118 429.1 349 64.2
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 2.2e-117 426.4 273 82.1
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 5.4e-116 421.8 345 62.9
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 5.9e-115 418.3 335 64.5
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.7e-114 416.8 335 64.2
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 1.9e-113 413.3 324 66.0
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 7.3e-113 411.4 341 62.2
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 2.1e-112 409.8 316 68.7
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 8.0e-112 407.9 368 61.1
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 5.2e-111 405.2 294 72.8
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 5.2e-111 405.2 309 67.6
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 6.4e-109 398.3 341 60.7
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 8.3e-109 397.9 267 76.8
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 2.7e-107 392.9 344 63.4
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 1.7e-106 390.2 342 57.9
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 4.7e-104 382.1 259 76.4
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.0e-103 379.0 375 56.5
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.7e-101 372.5 282 68.1
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 1.0e-98 364.4 233 81.1
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.3e-98 363.2 242 76.4
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 7.3e-97 358.2 253 73.9
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 5.2e-95 352.1 307 59.9
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 5.2e-95 352.1 252 70.2
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.3e-93 347.4 281 63.0
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.1e-91 340.1 222 76.1
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.7e-90 337.0 253 71.1
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 4.3e-89 332.4 363 55.6
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 7.3e-89 331.6 327 54.4
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 7.1e-84 315.1 206 81.1
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.3e-66 257.7 290 54.1
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.5e-65 254.2 185 72.4
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 2.4e-55 220.3 158 70.3
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.9e-52 210.7 335 40.0
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.5e-52 210.3 168 61.9
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 6.1e-51 205.7 338 42.9
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 9.1e-47 191.8 129 76.0
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.0e-46 190.7 145 71.0
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 3.8e-45 186.4 258 47.7
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 8.5e-45 185.3 141 69.5
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 9.1e-39 165.2 243 38.7
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 2.9e-37 160.2 104 74.0
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.8e-34 151.0 96 81.2
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 2.3e-34 150.6 88 79.5
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 3.0e-34 150.2 224 42.9
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.7e-34 149.1 99 73.7
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 3.3e-33 146.7 101 70.3
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 9.1e-31 138.7 101 65.3
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 9.4e-28 128.6 76 80.3
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.2e-27 128.3 100 70.0
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 4.4e-25 119.8 85 65.9
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 2.7e-22 110.5 76 75.0
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 7.7e-22 109.0 196 43.9
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.3e-21 108.2 73 65.8
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 4.7e-19 99.8 78 62.8
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 4.7e-19 99.8 73 71.2
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 2.3e-18 97.4 62 77.4
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 6.8e-18 95.9 82 63.4
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 1.2e-17 95.1 76 60.5
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 1.4e-10 71.6 59 69.5
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 7.0e-07 59.3 50 60.0


User provided reference genes

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