Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40315 Brassica carinata HOM05D000689 ORTHO05D031932 1.5e-116 422.9 219 100.0
A09p51560 Brassica napus HOM05D000689 ORTHO05D031932 4.5e-49 198.7 186 62.4
BcaC07g42595 Brassica carinata HOM05D000689 ORTHO05D000015 8.8e-37 157.9 192 50.0
BraA07t30095Z Brassica rapa HOM05D000689 ORTHO05D000015 4.4e-36 155.6 177 53.7
BcaC08g44961 Brassica carinata HOM05D000689 ORTHO05D000015 2.8e-35 152.9 177 52.5
BolC6t37753H Brassica oleracea HOM05D000689 ORTHO05D000015 2.8e-35 152.9 177 52.5
BcaB02g07479 Brassica carinata HOM05D000689 ORTHO05D000015 3.7e-35 152.5 176 52.8
BcaB02g07481 Brassica carinata HOM05D000689 ORTHO05D000015 2.4e-34 149.8 183 50.8
Thhalv10006403m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 5.3e-34 148.7 182 50.5
BolC8t51031H Brassica oleracea HOM05D000689 ORTHO05D031932 3.5e-33 146.0 80 93.8
Carub.0005s2591 Capsella rubella HOM05D000689 ORTHO05D000015 2.5e-31 139.8 181 48.6
AL5G41070 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 3.2e-31 139.4 182 48.4
AT3G59190 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 1.0e-29 134.4 182 46.7
C08p34300 Brassica napus HOM05D000689 ORTHO05D000015 3.3e-28 129.4 191 41.9
BolC8t51026H Brassica oleracea HOM05D000689 ORTHO05D000015 3.3e-28 129.4 191 41.9
BcaC07g40313 Brassica carinata HOM05D000689 ORTHO05D000015 5.7e-28 128.6 191 41.9
A09p51550 Brassica napus HOM05D000689 ORTHO05D000015 6.3e-27 125.2 191 40.3
BraA09t40590Z Brassica rapa HOM05D000689 ORTHO05D000015 6.3e-27 125.2 191 40.3
C08p34320 Brassica napus HOM05D000647 ORTHO05D024081 1.0e-24 117.9 75 78.7
AT3G59180 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 1.5e-23 114.0 181 44.2
Thhalv10005909m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 2.5e-23 113.2 189 40.2
BcaC07g42596 Brassica carinata HOM05D000689 ORTHO05D000015 2.4e-18 96.7 190 37.9
AL5G41060 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 2.0e-17 93.6 167 42.5
BcaC07g40316 Brassica carinata HOM05D000689 ORTHO05D000015 3.5e-17 92.8 186 37.6
AT3G59230 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 4.5e-17 92.4 189 36.5
AT1G58310 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 1.0e-16 91.3 191 37.7
C08p34330 Brassica napus HOM05D000689 ORTHO05D000015 1.3e-16 90.9 186 37.1
A09p51570 Brassica napus HOM05D000689 ORTHO05D000015 1.7e-16 90.5 186 37.1
AL2G18450 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 3.8e-16 89.4 179 37.4
AT3G59200 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 6.5e-16 88.6 181 40.3
Carub.0002s0624 Capsella rubella HOM05D000689 ORTHO05D000015 8.5e-16 88.2 186 36.0
Carub.0007s3354 Capsella rubella HOM05D000689 ORTHO05D000015 8.5e-16 88.2 217 33.6
Sp5g03860 Schrenkiella parvula HOM05D000689 ORTHO05D000015 8.5e-16 88.2 186 37.6
Thhalv10005952m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 1.1e-15 87.8 148 40.5
BraA09t40592Z Brassica rapa HOM05D000689 ORTHO05D000015 1.9e-15 87.0 186 36.6
AL5G41080 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 4.2e-15 85.9 181 39.2
AT3G59210 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 4.2e-15 85.9 189 33.9
Thhalv10006442m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 4.2e-15 85.9 188 38.8
A07p24510 Brassica napus HOM05D000689 ORTHO05D000015 2.8e-14 83.2 189 34.4
BraA07t30097Z Brassica rapa HOM05D000689 ORTHO05D000015 2.8e-14 83.2 189 34.4
Carub.0007s2832 Capsella rubella HOM05D000689 ORTHO05D000015 2.8e-14 83.2 187 37.4
Carub.0005s2592 Capsella rubella HOM05D000689 ORTHO05D000015 3.6e-14 82.8 182 36.3
AT4G14096 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 8.0e-14 81.6 187 33.2
Carub.0005s2593 Capsella rubella HOM05D000689 ORTHO05D000015 1.0e-13 81.3 189 32.8
Carub.0005s2590 Capsella rubella HOM05D000689 ORTHO05D000015 1.4e-13 80.9 194 35.6
AL7G47400 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 1.8e-13 80.5 164 33.5
AT3G59250 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 1.8e-13 80.5 190 33.7
AT5G41840 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 1.8e-13 80.5 164 33.5
C06p25920 Brassica napus HOM05D000689 ORTHO05D000015 1.8e-13 80.5 189 33.9
C06p25930 Brassica napus HOM05D000689 ORTHO05D000015 1.8e-13 80.5 205 33.2
CARHR169580 Cardamine hirsuta HOM05D000689 ORTHO05D000015 1.8e-13 80.5 209 33.5
CARHR169600 Cardamine hirsuta HOM05D000689 ORTHO05D000015 3.0e-13 79.7 188 33.0
BcaB02g07478 Brassica carinata HOM05D000689 ORTHO05D000015 4.0e-13 79.3 189 32.8
BcaC08g44963 Brassica carinata HOM05D000689 ORTHO05D000015 4.0e-13 79.3 189 33.3
BcaC08g44964 Brassica carinata HOM05D000689 ORTHO05D000015 5.2e-13 79.0 189 33.3
C06p25910 Brassica napus HOM05D000689 ORTHO05D000015 6.8e-13 78.6 189 33.3
BolC6t37754H Brassica oleracea HOM05D000689 ORTHO05D000015 6.8e-13 78.6 189 33.3
AL5G41040 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 8.8e-13 78.2 194 35.1
AL5G41090 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 1.2e-12 77.8 179 33.5
AT3G59160 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 1.2e-12 77.8 191 33.0
Thhalv10006370m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 1.2e-12 77.8 190 35.8
BcaB05g21738 Brassica carinata HOM05D000689 ORTHO05D000015 2.0e-12 77.0 60 70.0
BcaC08g44965 Brassica carinata HOM05D000689 ORTHO05D000015 2.0e-12 77.0 189 33.3
BolC6t37755H Brassica oleracea HOM05D000689 ORTHO05D000015 2.0e-12 77.0 189 33.3
BraA07t30100Z Brassica rapa HOM05D000689 ORTHO05D000015 2.0e-12 77.0 189 33.3
Sp4g10190 Schrenkiella parvula HOM05D000689 ORTHO05D000015 2.0e-12 77.0 187 32.1
AL5G41050 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 3.4e-12 76.3 187 33.2
AT5G41830 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 3.4e-12 76.3 184 29.9
AT3G49150 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 4.4e-12 75.9 189 32.3
A07p24500 Brassica napus HOM05D000583 ORTHO05D000442 4.4e-12 75.9 173 36.4
A07p24520 Brassica napus HOM05D000689 ORTHO05D000015 7.5e-12 75.1 189 32.8
Carub.0007s3353 Capsella rubella HOM05D000689 ORTHO05D000015 7.5e-12 75.1 214 32.2
CARHR169560 Cardamine hirsuta HOM05D000689 ORTHO05D000015 7.5e-12 75.1 176 34.1
Carub.0005s2597 Capsella rubella HOM05D000689 ORTHO05D000015 9.8e-12 74.7 178 30.3
Thhalv10005937m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 9.8e-12 74.7 189 31.7
Thhalv10006219m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 9.8e-12 74.7 167 32.9
CARHR169570 Cardamine hirsuta HOM05D000689 ORTHO05D000015 1.3e-11 74.3 190 34.7
AT5G15620 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 1.7e-11 73.9 191 30.4
Carub.0007s3355 Capsella rubella HOM05D000689 ORTHO05D000015 2.2e-11 73.6 159 34.6
AT3G59240 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 2.8e-11 73.2 188 28.7
AL7G47750 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 3.7e-11 72.8 200 31.0
BraA07t30098Z Brassica rapa HOM05D000689 ORTHO05D000015 3.7e-11 72.8 189 32.3
AT3G59170 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 4.9e-11 72.4 195 33.3
AT4G14103 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 4.9e-11 72.4 187 33.2
A07p24550 Brassica napus HOM05D000689 ORTHO05D000015 4.9e-11 72.4 163 32.5
AL5G41120 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 6.3e-11 72.0 176 33.0
AL7G42310 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 6.3e-11 72.0 187 32.6
Carub.0005s2598 Capsella rubella HOM05D000689 ORTHO05D000015 8.3e-11 71.6 188 33.0
AL7G47410 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 1.1e-10 71.2 185 29.7
AT4G00320 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 1.1e-10 71.2 154 33.1
CARHR061840 Cardamine hirsuta HOM05D000689 ORTHO05D000015 1.1e-10 71.2 195 29.7
C06p25900 Brassica napus HOM05D000583 ORTHO05D000442 1.8e-10 70.5 154 33.8
Thhalv10006443m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 2.4e-10 70.1 189 30.7
CARHR052010 Cardamine hirsuta HOM05D000689 ORTHO05D000015 3.1e-10 69.7 144 31.2
Thhalv10005904m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 3.1e-10 69.7 186 33.9
BcaC07g42594 Brassica carinata HOM05D000689 ORTHO05D000015 7.0e-10 68.6 187 33.2
Carub.0005s2916 Capsella rubella HOM05D000689 ORTHO05D000015 7.0e-10 68.6 217 27.6
CARHR052020 Cardamine hirsuta HOM05D000689 ORTHO05D000015 7.0e-10 68.6 169 29.6
CARHR103660 Cardamine hirsuta HOM05D000689 ORTHO05D000015 2.0e-09 67.0 163 30.7
Thhalv10002546m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 2.0e-09 67.0 192 33.3
CARHR134010 Cardamine hirsuta HOM05D000689 ORTHO05D000015 3.5e-09 66.2 187 32.6
AL5G40760 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 4.5e-09 65.9 165 32.7
CARHR150810 Cardamine hirsuta HOM05D000689 ORTHO05D000015 1.0e-08 64.7 176 31.8
Carub.0005s0580 Capsella rubella HOM05D000689 ORTHO05D000015 1.7e-08 63.9 185 29.7
Carub.0007s3352 Capsella rubella HOM05D000689 ORTHO05D000015 1.7e-08 63.9 200 29.0
AL5G45240 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 2.3e-08 63.5 197 28.9
Carub.0005s2571 Capsella rubella HOM05D000689 ORTHO05D000015 2.3e-08 63.5 188 33.0
Carub.0007s1904 Capsella rubella HOM05D000689 ORTHO05D000015 2.3e-08 63.5 187 28.9
CARHR123020 Cardamine hirsuta HOM05D000689 ORTHO05D000015 2.3e-08 63.5 189 28.6
AL5G16810 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 2.9e-08 63.2 184 31.5
AL5G40800 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 2.9e-08 63.2 159 30.2
AL5G45250 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 3.8e-08 62.8 188 29.3
AT3G58920 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 3.8e-08 62.8 172 28.5
CARHR169630 Cardamine hirsuta HOM05D000689 ORTHO05D000015 3.8e-08 62.8 159 34.0
Thhalv10020569m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 3.8e-08 62.8 166 30.1
BcaB04g18805 Brassica carinata HOM05D000689 ORTHO05D000015 6.6e-08 62.0 172 30.8
CARHR169290 Cardamine hirsuta HOM05D000689 ORTHO05D000015 6.6e-08 62.0 212 29.7
Thhalv10006381m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 6.6e-08 62.0 186 31.2
CARHR212740 Cardamine hirsuta HOM05D000689 ORTHO05D000015 8.6e-08 61.6 160 31.9
AL3G12550 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 1.1e-07 61.2 152 33.6
AL5G40860 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 1.1e-07 61.2 180 27.8
Thhalv10021060m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 1.1e-07 61.2 179 29.1
AT3G62440 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 1.5e-07 60.8 185 29.2
Carub.0007s3339 Capsella rubella HOM05D000689 ORTHO05D000015 1.5e-07 60.8 199 28.6
AT3G62430 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 1.9e-07 60.5 198 29.3
AT5G41630 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 1.9e-07 60.5 182 30.2
CARHR212750 Cardamine hirsuta HOM05D000689 ORTHO05D000015 1.9e-07 60.5 161 31.1
AL5G35200 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 2.5e-07 60.1 186 31.2
AT3G54160 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 2.5e-07 60.1 186 30.6
AT3G58980 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 2.5e-07 60.1 159 29.6
Thhalv10006436m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 3.3e-07 59.7 188 29.3
C03p02610 Brassica napus HOM05D000689 ORTHO05D000015 4.3e-07 59.3 73 60.3
CARHR169360 Cardamine hirsuta HOM05D000689 ORTHO05D000015 5.6e-07 58.9 195 26.7
Carub.0007s1903 Capsella rubella HOM05D000689 ORTHO05D000015 7.3e-07 58.5 180 27.8
CARHR169320 Cardamine hirsuta HOM05D000689 ORTHO05D000015 7.3e-07 58.5 188 30.9
Thhalv10006456m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 9.5e-07 58.2 173 30.1
Carub.0005s2572 Capsella rubella HOM05D000689 ORTHO05D000015 1.2e-06 57.8 162 27.8
CARHR169620 Cardamine hirsuta HOM05D000689 ORTHO05D000015 1.6e-06 57.4 197 29.9
AT3G58960 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 2.8e-06 56.6 165 30.9
AL5G40750 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 3.6e-06 56.2 53 50.9
CARHR229180 Cardamine hirsuta HOM05D000689 ORTHO05D000015 3.6e-06 56.2 180 28.3
Thhalv10023102m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 3.6e-06 56.2 170 29.4
Thhalv10027779m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 3.6e-06 56.2 73 42.5
Carub.0003s0219 Capsella rubella HOM05D000689 ORTHO05D000015 4.7e-06 55.8 66 47.0
CARHR169310 Cardamine hirsuta HOM05D000689 ORTHO05D000015 4.7e-06 55.8 114 34.2
Duzib213G0421 Durio zibethinus HOM05D000051 ORTHO05D000015 4.7e-06 55.8 175 25.1
Thecc.07G045000 Theobroma cacao HOM05D000051 ORTHO05D000015 4.7e-06 55.8 168 27.4
A01p23580 Brassica napus HOM05D000689 ORTHO05D024322 6.1e-06 55.5 172 27.3
AT3G03030 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 8.0e-06 55.1 53 54.7
Carub.0001s3523 Capsella rubella HOM05D000689 ORTHO05D000015 8.0e-06 55.1 217 27.2
PGSC0003DMG401001040 Solanum tuberosum HOM05D000051 ORTHO05D000015 8.0e-06 55.1 143 30.1


User provided reference genes

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