Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 5.0e-265 917.1 445 100.0
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 3.5e-250 867.8 451 93.8
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 1.3e-249 865.9 451 93.6
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 1.3e-249 865.9 451 93.6
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 7.3e-248 860.1 451 93.3
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 6.6e-241 837.0 445 93.0
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 1.6e-234 815.8 444 89.2
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 2.9e-228 795.0 444 87.8
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 4.8e-223 777.7 444 85.4
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 8.1e-223 776.9 444 85.1
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 6.9e-222 773.9 444 84.7
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 1.0e-217 760.0 444 82.9
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 6.9e-214 747.3 518 71.8
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 1.8e-198 696.0 444 77.0
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 2.0e-192 676.0 447 70.2
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 2.8e-191 672.2 445 71.0
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 6.3e-191 671.0 444 70.9
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 9.1e-190 667.2 444 70.5
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 1.4e-187 659.8 444 69.1
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 9.4e-187 657.1 444 68.7
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 2.1e-186 656.0 450 68.0
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 2.1e-186 656.0 444 68.7
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 1.3e-183 646.7 465 66.0
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 4.8e-183 644.8 496 64.5
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 8.2e-183 644.0 451 67.8
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 1.4e-182 643.3 445 69.4
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 4.5e-181 638.3 444 67.6
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 2.2e-180 636.0 452 67.9
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 2.2e-180 636.0 461 65.7
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 2.9e-180 635.6 449 68.6
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 1.1e-179 633.6 450 66.4
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 4.2e-179 631.7 446 67.5
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 1.6e-178 629.8 445 67.4
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 2.7e-178 629.0 452 66.2
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 1.1e-176 623.6 444 67.8
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 2.6e-176 622.5 449 66.8
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 4.8e-175 618.2 444 66.2
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 1.8e-174 616.3 460 64.6
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 5.3e-174 614.8 487 62.0
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 3.5e-173 612.1 445 65.4
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 5.9e-173 611.3 453 64.7
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 1.0e-172 610.5 447 65.5
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 2.2e-172 609.4 445 64.3
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 6.5e-172 607.8 445 65.8
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 1.6e-170 603.2 445 64.9
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 4.0e-169 598.6 445 63.8
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 5.2e-169 598.2 468 62.4
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 1.5e-168 596.7 481 60.9
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 9.7e-168 594.0 447 64.2
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 3.7e-167 592.0 450 63.6
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 4.1e-166 588.6 412 69.2
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 5.3e-166 588.2 445 63.6
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.2e-165 587.0 456 62.9
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 7.7e-165 584.3 460 62.4
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 8.5e-164 580.9 448 62.1
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 9.4e-163 577.4 446 63.0
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 2.1e-162 576.2 446 63.5
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 2.3e-161 572.8 543 55.4
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 1.2e-160 570.5 445 62.7
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.5e-160 570.1 449 61.5
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 6.3e-159 564.7 448 59.4
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 1.1e-158 563.9 430 63.5
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 2.4e-158 562.8 449 59.9
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 2.4e-158 562.8 445 60.0
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 2.7e-157 559.3 548 53.3
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 4.5e-157 558.5 445 62.5
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 7.7e-157 557.8 445 59.6
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 2.3e-156 556.2 445 59.3
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 4.2e-155 552.0 436 63.1
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 4.9e-151 538.5 432 61.3
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.1e-150 537.3 467 59.1
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 1.1e-150 537.3 465 56.3
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 2.7e-149 532.7 443 59.4
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 6.6e-148 528.1 401 64.8
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 2.5e-147 526.2 430 60.0
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 1.2e-141 507.3 449 57.2
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 5.0e-140 501.9 426 59.6
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 7.3e-139 498.0 486 54.9
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 2.0e-136 490.0 335 67.5
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 6.2e-130 468.4 475 50.9
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 5.2e-129 465.3 484 48.1
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 1.3e-127 460.7 354 63.3
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 3.7e-127 459.1 411 57.4
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 3.2e-126 456.1 466 52.1
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 1.1e-113 414.5 393 56.0
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 1.5e-112 410.6 461 43.6
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 4.9e-111 405.6 457 45.3
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 6.4e-111 405.2 457 45.3
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 1.5e-104 384.0 302 62.9
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 7.6e-104 381.7 429 50.1
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 5.4e-102 375.6 408 49.5
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 3.0e-100 369.8 228 74.1
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 7.9e-93 345.1 196 79.1
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 8.7e-92 341.7 206 75.2
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 7.4e-91 338.6 292 55.5
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.3e-90 337.8 336 50.9
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 2.4e-89 333.6 196 77.6
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 1.9e-86 323.9 198 73.7
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.5e-86 323.6 264 59.1
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 9.3e-86 321.6 184 78.8
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 4.6e-77 292.7 229 56.3
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 9.7e-75 285.0 241 58.5
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 1.2e-72 278.1 234 58.1
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 2.5e-70 270.4 240 56.7
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 2.7e-69 266.9 168 70.2
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 1.4e-68 264.6 267 54.7
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 1.8e-68 264.2 251 54.2
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 2.8e-66 256.9 234 52.6
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 1.5e-64 251.1 153 75.8
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 2.0e-64 250.8 203 58.6
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 1.4e-57 228.0 131 76.3
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 2.4e-57 227.3 209 53.1
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.7e-55 221.1 211 52.1
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 2.7e-53 213.8 172 60.5
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 7.5e-51 205.7 181 56.4
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 3.7e-50 203.4 193 51.8
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 4.8e-50 203.0 340 34.1
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 1.9e-38 164.5 97 75.3
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 2.1e-37 161.0 278 32.7
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 2.3e-36 157.5 272 38.6
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.0e-35 154.5 85 75.3
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 4.6e-32 143.3 247 39.3
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 8.9e-28 129.0 76 73.7
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.7e-24 117.5 70 70.0
MCO12G281 Micromonas commoda HOM05D006173 ORTHO05D007685 1.0e-23 115.5 220 33.6
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.3e-15 88.6 93 50.5
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 3.3e-14 84.0 49 77.6
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 1.1e-12 79.0 52 69.2
Cre10.g466300 Chlamydomonas reinhardtii HOM05D006173 ORTHO05D007685 2.4e-09 67.8 350 21.7
Psat7g244360 Pisum sativum HOM05D000821 ORTHO05D000931 7.3e-06 56.2 43 58.1


User provided reference genes

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