Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40096 Brassica carinata HOM05D004343 ORTHO05D031323 2.6e-42 174.9 81 100.0
A09p17490 Brassica napus HOM05D004343 ORTHO05D005695 9.5e-37 156.4 86 84.9
BraA09t37375Z Brassica rapa HOM05D004343 ORTHO05D005695 3.6e-36 154.5 86 83.7
BcaB07g31219 Brassica carinata HOM05D004343 ORTHO05D005695 4.7e-36 154.1 86 82.6
BcaC04g22231 Brassica carinata HOM05D004343 ORTHO05D005695 1.4e-35 152.5 86 83.7
BolC9t55085H Brassica oleracea HOM05D004343 ORTHO05D005695 1.4e-35 152.5 86 83.7
Sp2g04240 Schrenkiella parvula HOM05D004343 ORTHO05D005695 1.8e-35 152.1 86 80.2
C09p21800 Brassica napus HOM05D004343 ORTHO05D005695 5.2e-35 150.6 86 82.6
Thhalv10023282m.g Eutrema salsugineum HOM05D004343 ORTHO05D005695 8.8e-35 149.8 86 80.2
Carub.0002s0485 Capsella rubella HOM05D004343 ORTHO05D005695 5.7e-34 147.1 86 77.9
AL2G16200 Arabidopsis lyrata HOM05D004343 ORTHO05D005695 1.7e-33 145.6 86 76.7
AT1G60490 Arabidopsis thaliana HOM05D004343 ORTHO05D005695 1.7e-33 145.6 86 76.7
Aa31LG2G9960 Aethionema arabicum HOM05D004343 ORTHO05D005695 3.7e-33 144.4 86 74.4
BcaC06g31812 Brassica carinata HOM05D004343 ORTHO05D005695 1.2e-31 139.4 86 72.1
BcaC02g10625 Brassica carinata HOM05D004343 ORTHO05D005695 7.8e-31 136.7 86 73.3
THA.LOC104823649 Tarenaya hassleriana HOM05D004343 ORTHO05D005695 7.8e-31 136.7 83 74.7
TWI36G0660 Tripterygium wilfordii HOM05D004343 ORTHO05D005695 4.7e-28 127.5 86 67.4
THA.LOC104809607 Tarenaya hassleriana HOM05D004343 ORTHO05D005695 1.0e-27 126.3 86 64.0
Cpa.g.sc69.63 Carica papaya HOM05D004343 ORTHO05D005695 1.4e-27 125.9 86 66.3
Lsat_1_v5_gn_4_161060 Lactuca sativa HOM05D004343 ORTHO05D005695 2.3e-27 125.2 87 65.5
Glyma.06G096300 Glycine max HOM05D004343 ORTHO05D005695 3.0e-27 124.8 80 67.5
Rhsim12G0115800 Rhododendron simsii HOM05D004343 ORTHO05D005695 4.0e-27 124.4 87 64.4
HanXRQChr14g0446801 Helianthus annuus HOM05D004343 ORTHO05D005695 8.9e-27 123.2 88 63.6
Manes.12G027200 Manihot esculenta HOM05D004343 ORTHO05D005695 8.9e-27 123.2 86 64.0
QL03p059677 Quercus lobata HOM05D004343 ORTHO05D005695 1.2e-26 122.9 86 66.3
TWI75G1525 Tripterygium wilfordii HOM05D004343 ORTHO05D005695 1.2e-26 122.9 86 66.3
Cc11_g15270 Coffea canephora HOM05D004343 ORTHO05D005695 1.5e-26 122.5 87 63.2
Nn2g14843 Nelumbo nucifera HOM05D004343 ORTHO05D005695 1.5e-26 122.5 85 64.7
Lj6A807T88 Lonicera japonica HOM05D004343 ORTHO05D005695 2.0e-26 122.1 87 62.1
Haze_12200 Corylus avellana HOM05D004343 ORTHO05D005695 2.6e-26 121.7 86 62.8
Oeu054064.1 Olea europaea HOM05D004343 ORTHO05D005695 2.6e-26 121.7 87 63.2
CANSAT01G0446 Cannabis sativa HOM05D004343 ORTHO05D005695 3.4e-26 121.3 85 64.7
MD13G1093900 Malus domestica HOM05D004343 ORTHO05D005695 3.4e-26 121.3 88 61.4
CiPaw.06G071000 Carya illinoinensis HOM05D004343 ORTHO05D005695 5.7e-26 120.6 86 65.1
PGR119G1808 Punica granatum HOM05D004343 ORTHO05D005695 7.5e-26 120.2 86 62.8
Atru.chr11.2051 Acer truncatum HOM05D004343 ORTHO05D005695 9.8e-26 119.8 86 64.0
C04p25930 Brassica napus HOM05D004343 ORTHO05D005695 9.8e-26 119.8 103 57.3
HanXRQChr17g0539451 Helianthus annuus HOM05D004343 ORTHO05D005695 9.8e-26 119.8 87 63.2
Actinidia15052 Actinidia chinensis HOM05D004343 ORTHO05D005695 1.3e-25 119.4 87 62.1
Thecc.02G252600 Theobroma cacao HOM05D004343 ORTHO05D005695 1.3e-25 119.4 86 61.6
Phvul.002G070100 Phaseolus vulgaris HOM05D004343 ORTHO05D005695 1.7e-25 119.0 86 62.8
vmacro16235 Vaccinium macrocarpon HOM05D004343 ORTHO05D005695 1.7e-25 119.0 87 63.2
GSVIVG01013767001 Vitis vinifera HOM05D004343 ORTHO05D005695 1.7e-25 119.0 86 64.0
Cfa009167 Carpinus fangiana HOM05D004343 ORTHO05D005695 2.2e-25 118.6 86 61.6
Ciclev10030717m.g Citrus clementina HOM05D004343 ORTHO05D005695 2.2e-25 118.6 91 60.4
Eucgr.H02571 Eucalyptus grandis HOM05D004343 ORTHO05D005695 2.2e-25 118.6 86 60.5
Duzib251G0882 Durio zibethinus HOM05D004343 ORTHO05D005695 2.9e-25 118.2 86 61.6
FAN07G1173 Fragaria x ananassa HOM05D004343 ORTHO05D005695 2.9e-25 118.2 88 61.4
A03p65570 Brassica napus HOM05D004343 ORTHO05D031323 3.7e-25 117.9 54 96.3
Dinv15280 Davidia involucrata HOM05D004343 ORTHO05D005695 3.7e-25 117.9 87 60.9
FAN17G1932 Fragaria x ananassa HOM05D004343 ORTHO05D005695 3.7e-25 117.9 89 60.7
FAN22G1014 Fragaria x ananassa HOM05D004343 ORTHO05D005695 3.7e-25 117.9 89 60.7
RcHm_v2.0_Chr4g0443651 Rosa chinensis HOM05D004343 ORTHO05D005695 4.9e-25 117.5 88 61.4
CDE05G0167 Ceratophyllum demersum HOM05D004343 ORTHO05D005695 6.4e-25 117.1 87 64.4
Medtr5g034120 Medicago truncatula HOM05D004343 ORTHO05D005695 6.4e-25 117.1 82 65.9
Psat2g104920 Pisum sativum HOM05D004343 ORTHO05D005695 6.4e-25 117.1 86 64.0
Prupe.1G251400 Prunus persica HOM05D004343 ORTHO05D005695 6.4e-25 117.1 88 60.2
TAR371G0394 Trochodendron aralioides HOM05D004343 ORTHO05D005695 6.4e-25 117.1 86 62.8
FvH4_4g34140 Fragaria vesca HOM05D004343 ORTHO05D005695 8.3e-25 116.7 88 60.2
FAN12G0317 Fragaria x ananassa HOM05D004343 ORTHO05D005695 8.3e-25 116.7 88 60.2
Glyma.04G094500 Glycine max HOM05D004343 ORTHO05D005695 8.3e-25 116.7 88 63.6
Duzib268G1271 Durio zibethinus HOM05D004343 ORTHO05D005695 1.1e-24 116.3 86 60.5
Lj2g0023088 Lotus japonicus HOM05D004343 ORTHO05D005695 1.1e-24 116.3 87 59.8
Oeu022146.1 Olea europaea HOM05D004343 ORTHO05D005695 1.1e-24 116.3 87 60.9
TAR622G0032 Trochodendron aralioides HOM05D004343 ORTHO05D005695 1.1e-24 116.3 86 61.6
MD16G1095200 Malus domestica HOM05D004343 ORTHO05D005695 1.4e-24 115.9 88 60.2
Ca_03146_v3 Cicer arietinum L. HOM05D004343 ORTHO05D005695 1.8e-24 115.5 86 62.8
SalBow8G4047 Salvia bowleyana HOM05D004343 ORTHO05D005695 1.8e-24 115.5 87 62.1
SGA_v2.0_scaffold181G39704 Striga asiatica HOM05D004343 ORTHO05D005695 1.8e-24 115.5 86 58.1
Atru.chr13.1904 Acer truncatum HOM05D004343 ORTHO05D005695 2.4e-24 115.2 86 62.8
Gohir.D01G149200 Gossypium hirsutum HOM05D004343 ORTHO05D005695 2.4e-24 115.2 86 61.6
TPR.G21086 Trifolium pratense HOM05D004343 ORTHO05D005695 2.4e-24 115.2 86 62.8
Aqoxy3G02910 Aquilegia oxysepala HOM05D004343 ORTHO05D005695 3.2e-24 114.8 86 60.5
CsaV3_2G024650 Cucumis sativus L. HOM05D004343 ORTHO05D005695 3.2e-24 114.8 86 60.5
Gohir.A01G161800 Gossypium hirsutum HOM05D004343 ORTHO05D005695 3.2e-24 114.8 86 61.6
Gorai.002G185300 Gossypium raimondii HOM05D004343 ORTHO05D005695 3.2e-24 114.8 86 61.6
Sabra12G0053500 Salix brachista HOM05D004343 ORTHO05D005695 3.2e-24 114.8 82 63.4
Sed0015591 Sechium edule HOM05D004343 ORTHO05D005695 3.2e-24 114.8 88 59.1
VMungo1215G0144 Vigna mungo HOM05D004343 ORTHO05D005695 3.2e-24 114.8 86 57.0
ECA246G3761 Erigeron canadensis HOM05D004343 ORTHO05D005695 4.1e-24 114.4 89 57.3
ClCG08G018000 Citrullus lanatus HOM05D004343 ORTHO05D005695 5.4e-24 114.0 86 60.5
DCAR_018086 Daucus carota HOM05D004343 ORTHO05D005695 5.4e-24 114.0 87 59.8
Migut.M00070 Erythranthe guttata HOM05D004343 ORTHO05D005695 7.0e-24 113.6 87 58.6
Hma1.2p1_0536F.1_g173910 Hydrangea macrophylla HOM05D004343 ORTHO05D005695 7.0e-24 113.6 82 62.2
Potri.012G075100 Populus trichocarpa HOM05D004343 ORTHO05D005695 1.2e-23 112.8 82 64.6
CAN.G1905.4 Capsicum annuum HOM05D004343 ORTHO05D005695 1.6e-23 112.5 87 58.6
Nitab4.5_0001663g0240 Nicotiana tabacum HOM05D004343 ORTHO05D005695 1.6e-23 112.5 87 60.9
Peaxi162Scf01286g00001 Petunia axillaris HOM05D004343 ORTHO05D005695 1.6e-23 112.5 87 60.9
MBI16_g27084_MAGBIO Magnolia biondii HOM05D004343 ORTHO05D005695 3.5e-23 111.3 86 57.0
Sc04g0009240 Simmondsia chinensis HOM05D004343 ORTHO05D005695 4.6e-23 110.9 86 60.5
Hma1.2p1_0160F.1_g070980 Hydrangea macrophylla HOM05D004343 ORTHO05D005695 5.9e-23 110.5 83 59.0
Solyc04g015350.3 Solanum lycopersicum HOM05D004343 ORTHO05D005695 3.0e-22 108.2 87 57.5
Sopen04g007420 Solanum pennellii HOM05D004343 ORTHO05D005695 3.0e-22 108.2 87 57.5
arahy.Tifrunner.gnm1.ann1.NH5LZK Arachis hypogaea HOM05D004343 ORTHO05D005695 3.9e-22 107.8 87 57.5
arahy.Tifrunner.gnm1.ann1.V3QVP0 Arachis hypogaea HOM05D004343 ORTHO05D005695 3.9e-22 107.8 87 57.5
Lalb_Chr09g0326321 Lupinus albus HOM05D004343 ORTHO05D005695 3.9e-22 107.8 84 58.3
Eucgr.B01668 Eucalyptus grandis HOM05D004343 ORTHO05D005695 1.1e-21 106.3 85 56.5
AUR62005396 Chenopodium quinoa HOM05D004343 ORTHO05D005695 1.5e-21 105.9 89 57.3
Lalb_Chr05g0216791 Lupinus albus HOM05D004343 ORTHO05D005695 1.5e-21 105.9 87 56.3
MSTRG.6617 Avicennia marina HOM05D004343 ORTHO05D005695 1.9e-21 105.5 87 56.3
AUR62014058 Chenopodium quinoa HOM05D004343 ORTHO05D005695 2.5e-21 105.1 89 55.1
PSO675G7676 Papaver somniferum HOM05D004343 ORTHO05D005695 5.6e-21 104.0 89 55.1
EL10Ac6g13693 Beta vulgaris HOM05D004343 ORTHO05D005695 7.3e-21 103.6 89 55.1
Ah.03g132780 Amaranthus hybridus HOM05D004343 ORTHO05D005695 8.0e-20 100.1 89 53.9
HPP92_021387 Vanilla planifolia HOM05D004343 ORTHO05D005695 1.1e-19 99.8 84 53.6
Hund25360 Selenicereus undatus HOM05D004343 ORTHO05D005695 1.8e-19 99.0 86 55.8
Zm00001eb178330 Zea mays HOM05D004343 ORTHO05D005695 1.8e-19 99.0 79 57.0
Eucgr.B01666 Eucalyptus grandis HOM05D004343 ORTHO05D005695 3.1e-19 98.2 86 53.5
SEGI_07357 Sequoiadendron giganteum HOM05D004343 ORTHO05D005695 1.2e-18 96.3 84 53.6
Pp3c10_8910 Physcomitrium patens HOM05D004343 ORTHO05D005695 1.5e-18 95.9 84 53.6
AagrBONN_evm.TU.Sc2ySwM_228.633 Anthoceros agrestis HOM05D004343 ORTHO05D005695 2.9e-17 91.7 83 54.2
Os05g0180600 Oryza sativa ssp. japonica HOM05D004343 ORTHO05D005695 1.4e-16 89.4 84 51.2
BolC4t24216H Brassica oleracea HOM05D004343 ORTHO05D005695 4.1e-16 87.8 86 52.3
Mapoly0003s0185 Marchantia polymorpha HOM05D004343 ORTHO05D005695 4.1e-16 87.8 89 47.2
C05p51030 Brassica napus HOM05D004343 ORTHO05D005695 1.2e-15 86.3 44 77.3
CSS0036353 Camellia sinensis var. sinensis HOM05D004343 ORTHO05D005695 1.3e-14 82.8 43 76.7
Os08g0307400 Oryza sativa ssp. japonica HOM05D004343 ORTHO05D005695 1.7e-14 82.4 79 49.4
COL.COLO4_24196 Corchorus olitorius HOM05D005103 ORTHO05D007000 1.5e-13 79.3 50 66.0
AL1G28650 Arabidopsis lyrata HOM05D004343 ORTHO05D031323 2.5e-13 78.6 58 63.8
AagrBONN_evm.TU.Sc2ySwM_362.587 Anthoceros agrestis HOM05D004343 ORTHO05D005695 1.6e-12 75.9 78 51.3
SMO134G0165 Selaginella moellendorffii HOM05D004343 ORTHO05D005695 1.6e-12 75.9 89 42.7
SMO228G0017 Selaginella moellendorffii HOM05D004343 ORTHO05D005695 1.5e-10 69.3 72 52.8
ATR0624G072 Amborella trichopoda HOM05D004343 ORTHO05D005695 2.0e-10 68.9 46 63.0
Nitab4.5_0000147g0050 Nicotiana tabacum HOM05D004343 ORTHO05D005695 2.4e-08 62.0 58 53.4
SEGI_22699 Sequoiadendron giganteum HOM05D004343 ORTHO05D005695 1.2e-07 59.7 43 58.1


User provided reference genes

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