Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 2.4e-69 265.4 134 100.0
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 3.6e-65 251.5 129 98.4
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 3.6e-65 251.5 129 98.4
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 7.4e-63 243.8 129 95.3
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 7.4e-63 243.8 129 95.3
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 1.8e-56 222.6 129 89.1
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 7.0e-45 184.1 129 77.5
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 9.1e-45 183.7 128 75.8
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 7.7e-44 180.6 128 76.6
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 7.7e-44 180.6 128 76.6
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 1.0e-43 180.3 128 75.8
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 1.1e-42 176.8 125 76.8
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 1.5e-39 166.4 128 71.9
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 4.4e-39 164.9 128 72.7
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 6.4e-38 161.0 128 70.3
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 1.1e-37 160.2 131 71.0
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 1.4e-37 159.8 128 69.5
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 1.4e-37 159.8 128 69.5
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 5.4e-37 157.9 129 69.8
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 1.2e-36 156.8 132 68.2
A04p03510 Brassica napus HOM05D002974 ORTHO05D002992 8.6e-35 150.6 130 66.9
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 4.3e-34 148.3 128 68.8
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 4.3e-34 148.3 100 81.0
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 7.5e-31 137.5 136 59.6
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 1.3e-19 100.1 100 61.0
A05p02090 Brassica napus HOM05D002974 ORTHO05D002992 5.1e-19 98.2 130 50.0
BraA05t19205Z Brassica rapa HOM05D002974 ORTHO05D002992 5.1e-19 98.2 130 50.0
BcaC01g05357 Brassica carinata HOM05D002974 ORTHO05D002992 1.5e-18 96.7 130 45.4
C03p27500 Brassica napus HOM05D002974 ORTHO05D002992 1.9e-18 96.3 130 45.4
BolC3t15126H Brassica oleracea HOM05D002974 ORTHO05D002992 1.9e-18 96.3 130 45.4
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 5.6e-18 94.7 135 50.4
A03p23100 Brassica napus HOM05D002974 ORTHO05D002992 1.6e-17 93.2 93 53.8
BraA03t11531Z Brassica rapa HOM05D002974 ORTHO05D002992 1.6e-17 93.2 93 53.8
Sp4g23480 Schrenkiella parvula HOM05D002974 ORTHO05D002992 1.6e-17 93.2 130 50.8
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.6e-17 93.2 118 51.7
CARHR136270 Cardamine hirsuta HOM05D002974 ORTHO05D002992 1.1e-16 90.5 126 50.0
BcaB01g03488 Brassica carinata HOM05D002974 ORTHO05D002992 1.8e-16 89.7 129 48.8
Thhalv10017346m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 1.8e-16 89.7 129 46.5
AL4G39150 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 8.9e-16 87.4 93 55.9
BolC4t21893H Brassica oleracea HOM05D002974 ORTHO05D002992 8.9e-16 87.4 93 52.7
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.2e-15 87.0 126 50.0
BcaC02g12758 Brassica carinata HOM05D002974 ORTHO05D002992 7.6e-15 84.3 128 43.8
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 1.7e-14 83.2 93 52.7
BcaC02g09865 Brassica carinata HOM05D002974 ORTHO05D002992 1.1e-13 80.5 55 81.8
BolC4t25225H Brassica oleracea HOM05D002974 ORTHO05D002992 1.1e-13 80.5 55 81.8
AT2G41180 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 5.4e-13 78.2 96 52.1
Carub.0004s2349 Capsella rubella HOM05D002974 ORTHO05D002992 1.3e-11 73.6 99 50.5
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 1.4e-08 63.5 52 65.4
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 4.0e-08 62.0 119 38.7
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 6.8e-08 61.2 118 39.8
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 6.8e-08 61.2 74 52.7
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 8.9e-08 60.8 74 48.6
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 8.9e-08 60.8 74 52.7
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 1.2e-07 60.5 136 40.4
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 1.2e-07 60.5 74 48.6
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 1.5e-07 60.1 130 40.0
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 2.6e-07 59.3 115 40.9
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 4.4e-07 58.5 41 70.7
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 4.4e-07 58.5 53 62.3
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 4.4e-07 58.5 44 65.9
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 4.4e-07 58.5 44 65.9
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 4.4e-07 58.5 46 63.0
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 5.8e-07 58.2 64 59.4
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 7.6e-07 57.8 55 60.0
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 7.6e-07 57.8 49 67.3
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 9.9e-07 57.4 53 64.2
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 9.9e-07 57.4 53 64.2
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 9.9e-07 57.4 54 59.3
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 9.9e-07 57.4 74 47.3
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.3e-06 57.0 49 57.1
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.3e-06 57.0 49 57.1
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 1.3e-06 57.0 136 38.2
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.3e-06 57.0 111 41.4
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 1.7e-06 56.6 51 62.7
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.7e-06 56.6 67 56.7
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 1.7e-06 56.6 64 59.4
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.7e-06 56.6 49 57.1
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 1.7e-06 56.6 110 40.0
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.7e-06 56.6 43 69.8
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 2.2e-06 56.2 101 41.6
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 2.2e-06 56.2 108 41.7
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.2e-06 56.2 62 53.2
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 2.9e-06 55.8 42 69.0
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 2.9e-06 55.8 47 66.0
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 3.8e-06 55.5 49 65.3
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.8e-06 55.5 62 53.2
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 3.8e-06 55.5 62 53.2
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 3.8e-06 55.5 58 56.9
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 3.8e-06 55.5 71 49.3
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 4.9e-06 55.1 55 58.2
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 4.9e-06 55.1 135 38.5
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 6.4e-06 54.7 49 57.1
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 6.4e-06 54.7 44 61.4
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 6.4e-06 54.7 49 59.2
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 6.4e-06 54.7 135 37.0
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 6.4e-06 54.7 47 63.8
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 8.4e-06 54.3 46 63.0
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 8.4e-06 54.3 33 84.8
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 8.4e-06 54.3 61 60.7
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 8.4e-06 54.3 62 54.8
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 8.4e-06 54.3 44 65.9
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 8.4e-06 54.3 49 61.2


User provided reference genes

Program Settings