Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39818 Brassica carinata HOM05D004414 ORTHO05D001824 2.6e-40 168.3 87 100.0
BcaB01g00189 Brassica carinata HOM05D004414 ORTHO05D001824 2.2e-39 165.2 85 98.8
BcaC07g39819 Brassica carinata HOM05D004414 ORTHO05D001824 2.2e-39 165.2 85 98.8
C08p29680 Brassica napus HOM05D004414 ORTHO05D001824 9.8e-32 139.8 89 84.3
BolC8t50577H Brassica oleracea HOM05D004414 ORTHO05D001824 8.3e-31 136.7 89 83.1
AT3G54500 Arabidopsis thaliana HOM05D004414 ORTHO05D001824 1.2e-29 132.9 89 80.9
AL5G35550 Arabidopsis lyrata HOM05D004414 ORTHO05D001824 7.8e-29 130.2 89 79.8
Thhalv10010203m.g Eutrema salsugineum HOM05D004414 ORTHO05D001824 7.8e-29 130.2 89 77.5
BcaB02g07735 Brassica carinata HOM05D004414 ORTHO05D001824 6.6e-28 127.1 89 76.4
CARHR164400 Cardamine hirsuta HOM05D004414 ORTHO05D001824 1.6e-26 122.5 89 75.3
Carub.0005s2112 Capsella rubella HOM05D004414 ORTHO05D001824 8.1e-26 120.2 89 74.2
A07p22140 Brassica napus HOM05D004414 ORTHO05D001824 3.7e-23 111.3 88 73.9
BcaC08g44684 Brassica carinata HOM05D004414 ORTHO05D001824 4.9e-23 110.9 89 73.0
C06p22190 Brassica napus HOM05D004414 ORTHO05D001824 4.9e-23 110.9 89 73.0
BraA07t29897Z Brassica rapa HOM05D004414 ORTHO05D001824 6.4e-23 110.5 90 72.2
Aa31sc434G10 Aethionema arabicum HOM05D004414 ORTHO05D001824 1.4e-22 109.4 93 67.7
BolC6t37405H Brassica oleracea HOM05D004414 ORTHO05D001824 1.4e-22 109.4 89 71.9
THA.LOC104801739 Tarenaya hassleriana HOM05D004414 ORTHO05D001824 8.6e-20 100.1 90 64.4
THA.LOC104824187 Tarenaya hassleriana HOM05D004414 ORTHO05D001824 8.6e-20 100.1 90 67.8
Cpa.g.sc223.14 Carica papaya HOM05D004414 ORTHO05D001824 4.9e-15 84.3 90 56.7
Sp5g07920 Schrenkiella parvula HOM05D004414 ORTHO05D001824 1.4e-14 82.8 85 57.6
COL.COLO4_09982 Corchorus olitorius HOM05D004414 ORTHO05D001824 2.4e-14 82.0 90 51.1
Thecc.10G167000 Theobroma cacao HOM05D004414 ORTHO05D001824 4.2e-14 81.3 90 51.1
Duzib114G0298 Durio zibethinus HOM05D004414 ORTHO05D001824 1.0e-12 76.6 90 46.7
Prupe.2G032000 Prunus persica HOM05D004414 ORTHO05D001824 1.0e-12 76.6 92 45.7
MD02G1290900 Malus domestica HOM05D004414 ORTHO05D001824 1.3e-12 76.3 92 45.7
Duzib106G1605 Durio zibethinus HOM05D004414 ORTHO05D001824 2.3e-12 75.5 90 46.7
Duzib128G0092 Durio zibethinus HOM05D004414 ORTHO05D001824 3.0e-12 75.1 90 47.8
COL.COLO4_09984 Corchorus olitorius HOM05D004414 ORTHO05D001824 5.1e-12 74.3 90 46.7
RcHm_v2.0_Chr1g0321761 Rosa chinensis HOM05D004414 ORTHO05D001824 1.9e-11 72.4 92 46.7
Dinv09256 Davidia involucrata HOM05D004414 ORTHO05D001824 2.5e-11 72.0 93 41.9
MD07G1036600 Malus domestica HOM05D004414 ORTHO05D001824 2.5e-11 72.0 92 43.5
Manes.04G165400 Manihot esculenta HOM05D004414 ORTHO05D001824 3.3e-11 71.6 92 44.6
TWI63G0867 Tripterygium wilfordii HOM05D004414 ORTHO05D001824 3.6e-10 68.2 93 46.2
QL04p014278 Quercus lobata HOM05D004414 ORTHO05D001824 1.4e-09 66.2 92 43.5
CiPaw.14G006500 Carya illinoinensis HOM05D004414 ORTHO05D001824 1.8e-09 65.9 90 42.2
FvH4_7g02700 Fragaria vesca HOM05D004414 ORTHO05D001824 3.1e-09 65.1 92 41.3
FAN06G1884 Fragaria x ananassa HOM05D004414 ORTHO05D001824 3.1e-09 65.1 92 41.3
Dinv32037 Davidia involucrata HOM05D004414 ORTHO05D001824 5.3e-09 64.3 93 39.8
Ciclev10004446m.g Citrus clementina HOM05D004414 ORTHO05D001824 9.0e-09 63.5 92 45.7
TAR369G0352 Trochodendron aralioides HOM05D004414 ORTHO05D001824 9.0e-09 63.5 93 43.0
CsaV3_5G036640 Cucumis sativus L. HOM05D004414 ORTHO05D001824 1.5e-08 62.8 90 41.1
CiPaw.13G012100 Carya illinoinensis HOM05D004414 ORTHO05D001824 2.6e-08 62.0 92 41.3
Hund13341 Selenicereus undatus HOM05D004414 ORTHO05D001824 2.6e-08 62.0 92 37.0
Potri.T126406 Populus trichocarpa HOM05D004414 ORTHO05D001824 3.4e-08 61.6 92 43.5
Potri.T126606 Populus trichocarpa HOM05D004414 ORTHO05D001824 3.4e-08 61.6 92 43.5
MELO3C012461.2 Cucumis melo HOM05D004414 ORTHO05D001824 4.4e-08 61.2 92 42.4
Potri.003G200600 Populus trichocarpa HOM05D004414 ORTHO05D001824 4.4e-08 61.2 92 43.5
Potri.T127206 Populus trichocarpa HOM05D004414 ORTHO05D001824 4.4e-08 61.2 92 43.5
CSS0028207 Camellia sinensis var. sinensis HOM05D004414 ORTHO05D001824 5.8e-08 60.8 94 36.2
Haze_03067 Corylus avellana HOM05D004414 ORTHO05D001824 5.8e-08 60.8 92 41.3
Potri.001G025100 Populus trichocarpa HOM05D004414 ORTHO05D001824 5.8e-08 60.8 92 42.4
ClCG05G026710 Citrullus lanatus HOM05D004414 ORTHO05D001824 7.6e-08 60.5 92 40.2
TWI15G1156 Tripterygium wilfordii HOM05D004414 ORTHO05D001824 9.9e-08 60.1 92 42.4
Atru.chr12.1399 Acer truncatum HOM05D004414 ORTHO05D001824 1.3e-07 59.7 92 46.7
Gohir.A05G280800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 1.3e-07 59.7 90 40.0
Gohir.D05G282800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 1.3e-07 59.7 90 40.0
Gorai.009G296300 Gossypium raimondii HOM05D004414 ORTHO05D001824 1.7e-07 59.3 90 40.0
Sabra03G0148200 Salix brachista HOM05D004414 ORTHO05D001824 2.9e-07 58.5 92 43.5
EL10Ac2g02826 Beta vulgaris HOM05D004414 ORTHO05D001824 4.9e-07 57.8 92 33.7
FAN03G1361 Fragaria x ananassa HOM05D004414 ORTHO05D001824 4.9e-07 57.8 92 40.2
TAR633G1473 Trochodendron aralioides HOM05D004414 ORTHO05D001824 4.9e-07 57.8 93 38.7
GSVIVG01000669001 Vitis vinifera HOM05D004414 ORTHO05D001824 4.9e-07 57.8 93 38.7
arahy.Tifrunner.gnm1.ann1.19HB3K Arachis hypogaea HOM05D004414 ORTHO05D001824 6.4e-07 57.4 89 41.6
arahy.Tifrunner.gnm1.ann1.XZ22FX Arachis hypogaea HOM05D004414 ORTHO05D001824 6.4e-07 57.4 89 41.6
FAN10G4033 Fragaria x ananassa HOM05D004414 ORTHO05D001824 8.4e-07 57.0 92 39.1
AUR62026844 Chenopodium quinoa HOM05D004414 ORTHO05D001824 1.9e-06 55.8 92 34.8
Sc10g0004350 Simmondsia chinensis HOM05D004414 ORTHO05D001824 7.1e-06 53.9 93 35.5
Potri.T126906 Populus trichocarpa HOM05D004414 ORTHO05D001824 9.3e-06 53.5 89 41.6


User provided reference genes

Program Settings