Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39817 Brassica carinata HOM05D004414 ORTHO05D001824 4.8e-177 624.4 315 100.0
BcaB01g00189 Brassica carinata HOM05D004414 ORTHO05D001824 1.0e-166 590.1 308 98.1
BcaC07g39819 Brassica carinata HOM05D004414 ORTHO05D001824 1.8e-152 542.7 325 88.0
Sp5g07920 Schrenkiella parvula HOM05D004414 ORTHO05D001824 4.9e-113 411.8 388 63.4
BcaB02g07735 Brassica carinata HOM05D004414 ORTHO05D001824 6.1e-108 394.8 385 61.8
CARHR164400 Cardamine hirsuta HOM05D004414 ORTHO05D001824 5.9e-103 378.3 379 61.5
A07p22140 Brassica napus HOM05D004414 ORTHO05D001824 9.5e-101 370.9 376 62.0
BcaC08g44684 Brassica carinata HOM05D004414 ORTHO05D001824 8.3e-97 357.8 379 60.4
C06p22190 Brassica napus HOM05D004414 ORTHO05D001824 8.3e-97 357.8 379 60.4
Carub.0005s2112 Capsella rubella HOM05D004414 ORTHO05D001824 1.1e-96 357.5 389 56.8
BraA07t29897Z Brassica rapa HOM05D004414 ORTHO05D001824 3.5e-95 352.4 410 56.6
BolC6t37405H Brassica oleracea HOM05D004414 ORTHO05D001824 4.6e-95 352.1 379 59.6
Thhalv10010203m.g Eutrema salsugineum HOM05D004414 ORTHO05D001824 1.0e-94 350.9 383 57.4
AL5G35550 Arabidopsis lyrata HOM05D004414 ORTHO05D001824 1.6e-87 327.0 383 55.6
AT3G54500 Arabidopsis thaliana HOM05D004414 ORTHO05D001824 3.5e-79 299.3 400 49.0
Aa31sc434G10 Aethionema arabicum HOM05D004414 ORTHO05D001824 7.8e-71 271.6 388 47.2
THA.LOC104824187 Tarenaya hassleriana HOM05D004414 ORTHO05D001824 1.3e-68 264.2 391 46.0
THA.LOC104801739 Tarenaya hassleriana HOM05D004414 ORTHO05D001824 6.7e-62 241.9 430 42.3
arahy.Tifrunner.gnm1.ann1.19HB3K Arachis hypogaea HOM05D004414 ORTHO05D001824 1.3e-33 147.9 399 33.8
arahy.Tifrunner.gnm1.ann1.XZ22FX Arachis hypogaea HOM05D004414 ORTHO05D001824 1.1e-32 144.8 399 33.3
COL.COLO4_09982 Corchorus olitorius HOM05D004414 ORTHO05D001824 6.1e-31 139.0 244 39.3
Haze_03067 Corylus avellana HOM05D004414 ORTHO05D001824 1.5e-29 134.4 200 45.0
Thecc.10G167000 Theobroma cacao HOM05D004414 ORTHO05D001824 1.3e-28 131.3 198 44.4
Duzib106G1605 Durio zibethinus HOM05D004414 ORTHO05D001824 2.2e-28 130.6 389 31.1
Duzib114G0298 Durio zibethinus HOM05D004414 ORTHO05D001824 2.8e-28 130.2 198 43.4
QL04p014278 Quercus lobata HOM05D004414 ORTHO05D001824 1.1e-27 128.3 437 31.4
Manes.04G165400 Manihot esculenta HOM05D004414 ORTHO05D001824 3.1e-27 126.7 189 45.0
Gohir.D05G282800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 5.3e-27 125.9 198 43.9
Glyma.04G141400 Glycine max HOM05D004414 ORTHO05D001824 1.5e-26 124.4 187 42.2
Gorai.009G296300 Gossypium raimondii HOM05D004414 ORTHO05D001824 1.5e-26 124.4 198 43.9
Sabra03G0148200 Salix brachista HOM05D004414 ORTHO05D001824 1.5e-26 124.4 421 29.0
Dinv09256 Davidia involucrata HOM05D004414 ORTHO05D001824 2.0e-26 124.0 202 43.1
Phvul.005G029800 Phaseolus vulgaris HOM05D004414 ORTHO05D001824 2.6e-26 123.6 197 41.1
Dinv32037 Davidia involucrata HOM05D004414 ORTHO05D001824 4.5e-26 122.9 205 42.4
Glyma.11G154700 Glycine max HOM05D004414 ORTHO05D001824 4.5e-26 122.9 393 31.3
Potri.001G025100 Populus trichocarpa HOM05D004414 ORTHO05D001824 1.3e-25 121.3 398 30.2
Gohir.A05G280800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 2.9e-25 120.2 198 42.9
VMungo1080G0433 Vigna mungo HOM05D004414 ORTHO05D001824 5.0e-25 119.4 189 41.8
Atru.chr12.1399 Acer truncatum HOM05D004414 ORTHO05D001824 4.2e-24 116.3 200 43.0
Ciclev10004446m.g Citrus clementina HOM05D004414 ORTHO05D001824 4.2e-24 116.3 194 40.7
TPR.G9876 Trifolium pratense HOM05D004414 ORTHO05D001824 4.2e-24 116.3 187 42.8
Glyma.13G199300 Glycine max HOM05D004414 ORTHO05D001824 1.2e-23 114.8 368 30.4
Glyma.15G237600 Glycine max HOM05D004414 ORTHO05D001824 6.1e-23 112.5 371 31.5
Hma1.2p1_1251F.1_g270410 Hydrangea macrophylla HOM05D004414 ORTHO05D001824 6.1e-23 112.5 203 36.9
CiPaw.14G006500 Carya illinoinensis HOM05D004414 ORTHO05D001824 8.0e-23 112.1 199 40.7
BolC8t50577H Brassica oleracea HOM05D004414 ORTHO05D001824 1.0e-22 111.7 95 67.4
Lalb_Chr01g0007921 Lupinus albus HOM05D004414 ORTHO05D001824 1.4e-22 111.3 386 32.1
TWI15G1156 Tripterygium wilfordii HOM05D004414 ORTHO05D001824 1.8e-22 110.9 199 42.7
CANSAT56G3557 Cannabis sativa HOM05D004414 ORTHO05D001824 2.3e-22 110.5 193 41.5
MD07G1036600 Malus domestica HOM05D004414 ORTHO05D001824 3.9e-22 109.8 433 29.1
Potri.T127206 Populus trichocarpa HOM05D004414 ORTHO05D001824 5.2e-22 109.4 204 39.2
Lj9A655T40 Lonicera japonica HOM05D004414 ORTHO05D001824 2.6e-21 107.1 206 39.3
MELO3C012461.2 Cucumis melo HOM05D004414 ORTHO05D001824 3.3e-21 106.7 227 37.9
CsaV3_5G036640 Cucumis sativus L. HOM05D004414 ORTHO05D001824 3.3e-21 106.7 227 38.3
C04p38010 Brassica napus HOM05D004414 ORTHO05D028135 7.4e-21 105.5 205 39.0
Duzib128G0092 Durio zibethinus HOM05D004414 ORTHO05D001824 2.8e-20 103.6 198 38.4
Cpa.g.sc223.17 Carica papaya HOM05D004414 ORTHO05D001824 3.7e-20 103.2 103 57.3
Cc00_g03090 Coffea canephora HOM05D004414 ORTHO05D001824 3.7e-20 103.2 205 39.5
Eucgr.G03246 Eucalyptus grandis HOM05D004414 ORTHO05D001824 4.8e-20 102.8 387 29.2
Lj3g0012335 Lotus japonicus HOM05D004414 ORTHO05D001824 1.1e-19 101.7 184 42.4
VMungo1127G0555 Vigna mungo HOM05D004414 ORTHO05D001824 1.1e-19 101.7 367 28.9
ClCG05G026710 Citrullus lanatus HOM05D004414 ORTHO05D001824 1.4e-19 101.3 225 37.8
Phvul.011G209100 Phaseolus vulgaris HOM05D004414 ORTHO05D001824 2.4e-19 100.5 368 28.8
TAR633G1473 Trochodendron aralioides HOM05D004414 ORTHO05D001824 2.4e-19 100.5 199 39.7
GSVIVG01000669001 Vitis vinifera HOM05D004414 ORTHO05D001824 2.4e-19 100.5 207 38.6
TWI63G0867 Tripterygium wilfordii HOM05D004414 ORTHO05D001824 3.5e-18 96.7 323 31.3
Eucgr.J01191 Eucalyptus grandis HOM05D004414 ORTHO05D001824 5.9e-18 95.9 200 37.5
CiPaw.13G012100 Carya illinoinensis HOM05D004414 ORTHO05D001824 1.3e-17 94.7 336 28.6
MD02G1290900 Malus domestica HOM05D004414 ORTHO05D001824 1.3e-17 94.7 201 35.8
Psat5g217560 Pisum sativum HOM05D004414 ORTHO05D001824 1.3e-17 94.7 201 38.3
Actinidia19458 Actinidia chinensis HOM05D004414 ORTHO05D001824 1.7e-17 94.4 259 31.7
COL.COLO4_09983 Corchorus olitorius HOM05D004414 ORTHO05D001824 1.7e-17 94.4 159 42.1
CAN.G179.18 Capsicum annuum HOM05D004414 ORTHO05D001824 2.2e-17 94.0 204 38.7
Prupe.2G032000 Prunus persica HOM05D004414 ORTHO05D001824 3.8e-17 93.2 427 26.5
Potri.003G200600 Populus trichocarpa HOM05D004414 ORTHO05D001824 5.0e-17 92.8 128 46.9
RcHm_v2.0_Chr1g0321761 Rosa chinensis HOM05D004414 ORTHO05D001824 5.0e-17 92.8 198 36.4
CSS0028207 Camellia sinensis var. sinensis HOM05D004414 ORTHO05D001824 6.5e-17 92.4 125 45.6
Sed0007735 Sechium edule HOM05D004414 ORTHO05D001824 8.5e-17 92.0 190 37.4
Actinidia06255 Actinidia chinensis HOM05D004414 ORTHO05D001824 1.1e-16 91.7 198 37.9
Nn7g36611 Nelumbo nucifera HOM05D004414 ORTHO05D001824 1.5e-16 91.3 200 36.5
Rhsim07G0065500 Rhododendron simsii HOM05D004414 ORTHO05D001824 1.5e-16 91.3 205 35.1
A04p05320 Brassica napus HOM05D004414 ORTHO05D001824 7.2e-16 89.0 108 58.3
Peaxi162Scf00309g00418 Petunia axillaris HOM05D004414 ORTHO05D001824 2.1e-15 87.4 203 36.5
vmacro22979 Vaccinium macrocarpon HOM05D004414 ORTHO05D001824 2.1e-15 87.4 207 34.3
Nitab4.5_0002103g0040 Nicotiana tabacum HOM05D004414 ORTHO05D001824 3.6e-15 86.7 207 35.7
MSTRG.20525 Avicennia marina HOM05D004414 ORTHO05D001824 8.0e-15 85.5 210 36.2
Migut.B01215 Erythranthe guttata HOM05D004414 ORTHO05D001824 8.0e-15 85.5 200 36.5
Sopen01g030520 Solanum pennellii HOM05D004414 ORTHO05D001824 1.4e-14 84.7 204 36.8
SGA_v2.0_scaffold124G33637 Striga asiatica HOM05D004414 ORTHO05D001824 3.0e-14 83.6 180 37.2
BcaC02g09064 Brassica carinata HOM05D004414 ORTHO05D001824 5.2e-14 82.8 83 57.8
TAR369G0352 Trochodendron aralioides HOM05D004414 ORTHO05D001824 5.2e-14 82.8 206 34.5
FvH4_7g02700 Fragaria vesca HOM05D004414 ORTHO05D001824 2.6e-13 80.5 186 35.5
FAN06G1884 Fragaria x ananassa HOM05D004414 ORTHO05D001824 2.6e-13 80.5 186 35.5
FAN01G0485 Fragaria x ananassa HOM05D004414 ORTHO05D001824 7.5e-13 79.0 186 34.4
FAN03G1361 Fragaria x ananassa HOM05D004414 ORTHO05D001824 1.3e-12 78.2 186 34.9
vmacro22867 Vaccinium macrocarpon HOM05D004414 ORTHO05D001824 1.3e-12 78.2 122 43.4
FAN10G4033 Fragaria x ananassa HOM05D004414 ORTHO05D001824 1.7e-12 77.8 228 31.1
Cpa.g.sc223.14 Carica papaya HOM05D004414 ORTHO05D001824 2.2e-12 77.4 134 38.8
Aqoxy1G00343 Aquilegia oxysepala HOM05D004414 ORTHO05D001824 3.7e-12 76.6 205 31.2
Cc11_g01940 Coffea canephora HOM05D004414 ORTHO05D001824 2.4e-11 73.9 132 41.7
vmacro13744 Vaccinium macrocarpon HOM05D004414 ORTHO05D001824 3.1e-11 73.6 141 36.9
PSO339G3079 Papaver somniferum HOM05D004414 ORTHO05D001824 5.3e-11 72.8 202 31.7
MBI13_g36284_MAGBIO Magnolia biondii HOM05D004414 ORTHO05D001824 2.7e-10 70.5 200 30.5
PSO384G4230 Papaver somniferum HOM05D004414 ORTHO05D001824 2.7e-10 70.5 202 31.2
Sc10g0004350 Simmondsia chinensis HOM05D004414 ORTHO05D001824 3.5e-10 70.1 197 34.0
Ah.12g062920 Amaranthus hybridus HOM05D004414 ORTHO05D001824 1.0e-09 68.6 188 33.5
SalBow5G0980 Salvia bowleyana HOM05D004414 ORTHO05D001824 1.3e-09 68.2 236 30.5
unitig_749.g13481 Utricularia gibba HOM05D004414 ORTHO05D001824 1.3e-09 68.2 193 33.2
unitig_26.g9606 Utricularia gibba HOM05D003212 ORTHO05D003959 2.9e-09 67.0 185 34.1
AUR62026844 Chenopodium quinoa HOM05D004414 ORTHO05D001824 2.5e-08 63.9 182 31.3
Ah.10g030650 Amaranthus hybridus HOM05D004414 ORTHO05D001824 4.7e-07 59.7 186 29.0
EL10Ac2g02826 Beta vulgaris HOM05D004414 ORTHO05D001824 4.7e-07 59.7 236 29.2
BolC4t25374H Brassica oleracea HOM05D037785 ORTHO05D028135 4.7e-07 59.7 135 35.6
AUR62037207 Chenopodium quinoa HOM05D004414 ORTHO05D001824 6.1e-07 59.3 186 31.7
SalBow5G2656 Salvia bowleyana HOM05D004414 ORTHO05D001824 2.3e-06 57.4 264 27.3
CDE03G0404 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 5.2e-06 56.2 69 43.5


User provided reference genes

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