Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 0.0e+00 1139.8 584 100.0
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 0.0e+00 1126.7 584 99.0
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 0.0e+00 1115.1 582 98.6
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 0.0e+00 1087.8 584 96.2
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 0.0e+00 1085.9 584 96.2
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 2.7e-303 1044.6 582 92.3
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 7.3e-280 966.8 595 86.2
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 3.0e-273 944.9 595 84.5
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 1.1e-272 943.0 593 85.0
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 8.0e-271 936.8 598 84.6
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 2.3e-270 935.3 595 83.4
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 2.0e-261 905.6 597 80.9
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 6.6e-249 864.0 588 79.1
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 9.3e-243 843.6 587 77.5
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 9.6e-240 833.6 565 79.5
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 1.3e-239 833.2 597 74.9
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 1.1e-235 820.1 551 80.0
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 2.9e-228 795.4 587 74.8
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 6.1e-210 734.6 575 68.7
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 7.4e-208 727.6 604 65.1
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.0e-193 680.6 608 61.5
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.1e-192 677.2 605 60.8
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 3.3e-192 675.6 608 61.5
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.7e-191 673.3 608 61.3
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 2.2e-191 672.9 580 63.3
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.7e-191 672.2 603 61.0
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 5.3e-190 668.3 593 60.5
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 9.1e-190 667.5 594 60.8
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 8.5e-188 661.0 611 59.6
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 2.5e-187 659.4 601 61.2
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 2.7e-186 656.0 606 59.9
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 2.7e-186 656.0 594 60.6
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 6.1e-186 654.8 593 60.9
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 8.0e-186 654.4 602 59.3
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 1.4e-185 653.7 586 60.8
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.4e-185 653.7 600 60.3
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.3e-185 652.9 606 59.7
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 4.0e-185 652.1 613 58.4
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 5.2e-185 651.7 613 60.4
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 5.2e-185 651.7 595 59.8
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 1.2e-184 650.6 580 60.2
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 2.6e-184 649.4 600 59.7
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 3.4e-184 649.0 606 59.6
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 5.7e-184 648.3 446 78.7
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 3.7e-183 645.6 590 60.5
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 1.1e-182 644.0 595 59.2
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 4.1e-182 642.1 612 58.0
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 9.1e-182 641.0 604 58.3
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.2e-181 640.6 598 59.4
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 1.6e-181 640.2 594 58.1
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 2.0e-181 639.8 603 58.9
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 1.3e-180 637.1 594 60.3
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 2.9e-180 636.0 624 56.7
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 5.0e-180 635.2 598 59.2
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 1.1e-179 634.0 599 59.3
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 2.5e-179 632.9 594 59.8
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 3.2e-179 632.5 591 58.4
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 3.2e-179 632.5 600 59.7
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 3.2e-179 632.5 623 56.7
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.2e-179 632.5 634 56.2
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 4.2e-179 632.1 586 60.2
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 5.5e-179 631.7 600 59.5
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 2.1e-178 629.8 595 58.5
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 4.7e-178 628.6 603 58.2
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 8.0e-178 627.9 611 57.1
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 1.0e-177 627.5 605 58.2
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 1.4e-177 627.1 598 57.5
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 1.8e-177 626.7 612 57.5
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 1.8e-177 626.7 599 57.3
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 1.5e-176 623.6 494 65.2
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.5e-176 623.6 613 56.8
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 2.0e-176 623.2 584 59.2
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 4.4e-176 622.1 611 57.1
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 5.7e-176 621.7 613 56.4
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 7.5e-176 621.3 611 57.1
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 9.8e-176 620.9 611 58.3
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 2.8e-175 619.4 584 57.7
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 3.7e-175 619.0 612 57.0
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 4.8e-175 618.6 606 58.4
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 6.3e-175 618.2 582 57.6
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 8.3e-175 617.8 633 56.1
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 1.4e-174 617.1 581 60.4
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.4e-174 617.1 603 56.4
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 1.4e-174 617.1 607 57.0
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 2.4e-174 616.3 599 56.6
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 2.4e-174 616.3 602 58.5
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 7.0e-174 614.8 600 57.0
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 9.1e-174 614.4 603 58.2
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 3.5e-173 612.5 596 57.0
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 1.0e-172 610.9 625 55.0
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 2.3e-172 609.8 610 55.4
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 2.9e-172 609.4 589 56.9
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 3.8e-172 609.0 596 57.0
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.5e-171 607.1 594 57.4
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 1.9e-171 606.7 602 56.5
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 1.9e-171 606.7 578 57.4
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 3.3e-171 605.9 556 58.8
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 5.5e-171 605.1 552 61.6
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 9.5e-171 604.4 517 64.4
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 1.6e-170 603.6 599 56.6
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 3.6e-170 602.4 594 56.2
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 3.0e-169 599.4 575 57.2
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 3.0e-169 599.4 666 52.1
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 7.5e-168 594.7 591 57.4
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 8.3e-167 591.3 591 55.5
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 1.4e-166 590.5 496 63.3
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 2.4e-166 589.7 539 59.6
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 3.2e-166 589.3 604 55.3
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 7.8e-165 584.7 613 55.6
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 1.3e-164 583.9 591 55.0
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 1.7e-164 583.6 562 58.7
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 1.5e-163 580.5 595 54.5
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 1.5e-163 580.5 601 54.6
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 2.5e-163 579.7 607 54.9
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.6e-162 577.0 595 55.1
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.0e-161 574.3 607 54.5
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.4e-160 569.3 594 55.6
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 9.8e-160 567.8 659 49.3
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 9.8e-160 567.8 607 53.7
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 2.2e-159 566.6 659 49.2
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 4.9e-159 565.5 611 53.8
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.2e-158 561.2 619 52.8
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.9e-156 555.8 629 52.5
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 8.6e-156 554.7 571 54.3
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 5.6e-155 552.0 577 54.8
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.6e-154 549.3 489 62.8
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 4.7e-154 548.9 539 56.0
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 3.4e-152 542.7 549 54.5
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 2.9e-151 539.7 572 53.0
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 6.4e-151 538.5 562 54.4
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 7.1e-150 535.0 566 53.0
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 1.6e-146 523.9 599 50.3
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 5.2e-145 518.8 463 59.6
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.2e-144 517.7 508 55.7
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 7.1e-142 508.4 573 52.5
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.8e-135 486.1 585 47.4
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 3.5e-133 479.6 619 47.3
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 1.9e-131 473.8 599 47.9
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 2.7e-125 453.4 579 46.5
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 1.5e-123 447.6 561 46.9
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.3e-119 434.5 424 55.9
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 3.0e-116 423.3 380 61.3
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 5.7e-107 392.5 342 60.8
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 1.3e-100 371.3 664 37.3
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 7.4e-99 365.5 378 52.1
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 7.4e-91 339.0 339 55.2
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 6.3e-90 335.9 315 58.4
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 2.9e-79 300.4 386 47.4
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 3.6e-61 240.4 163 75.5
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 4.5e-56 223.4 259 51.7
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 1.8e-49 201.4 253 49.8
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 1.0e-47 195.7 227 51.5
BcaB01g00170 Brassica carinata HOM05D002220 ORTHO05D008182 1.3e-42 178.7 95 98.9
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 5.2e-36 156.8 141 61.0
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 2.6e-35 154.5 325 33.8
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 2.6e-35 154.5 477 25.4
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.5e-27 128.6 167 49.7
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 7.8e-24 116.3 554 23.5
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 2.4e-20 104.8 111 47.7
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 4.4e-19 100.5 157 39.5
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 7.6e-19 99.8 64 64.1
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 2.9e-18 97.8 84 54.8
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.9e-14 85.1 72 59.7
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 3.3e-14 84.3 83 55.4
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 2.1e-13 81.6 65 61.5
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 9.0e-12 76.3 66 63.6
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 1.3e-10 72.4 41 75.6
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.2e-10 71.6 205 28.3
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 3.8e-10 70.9 103 41.7


User provided reference genes

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