Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 4.4e-98 361.3 183 100.0
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 1.1e-61 240.4 183 72.1
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 2.5e-61 239.2 186 72.6
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 1.1e-51 207.2 164 70.7
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 1.1e-51 207.2 164 70.7
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 1.1e-51 207.2 164 70.7
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 1.1e-51 207.2 164 70.7
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 1.1e-51 207.2 164 70.7
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 2.4e-51 206.1 164 70.7
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 2.4e-51 206.1 164 70.7
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 3.1e-51 205.7 164 70.1
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 3.1e-51 205.7 164 70.1
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 3.1e-51 205.7 164 69.5
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 6.8e-51 204.5 164 70.1
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 8.9e-51 204.1 164 68.9
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 1.5e-50 203.4 164 70.1
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 5.8e-50 201.4 164 68.3
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 7.6e-50 201.1 164 68.9
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 1.3e-49 200.3 164 68.3
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 1.9e-48 196.4 164 67.7
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 1.9e-48 196.4 164 66.5
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 2.4e-48 196.1 164 64.0
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 3.2e-48 195.7 164 64.6
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 5.4e-48 194.9 164 64.0
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 7.1e-48 194.5 164 62.8
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 9.2e-48 194.1 164 64.0
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 1.2e-47 193.7 164 65.2
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 1.2e-47 193.7 164 64.6
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 1.6e-47 193.4 164 63.4
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 1.6e-47 193.4 164 64.0
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 2.7e-47 192.6 164 64.0
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 4.6e-47 191.8 164 64.0
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 6.0e-47 191.4 164 63.4
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 6.0e-47 191.4 164 64.6
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 6.0e-47 191.4 164 63.4
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 6.0e-47 191.4 164 63.4
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 6.0e-47 191.4 164 63.4
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 6.0e-47 191.4 164 64.6
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 6.0e-47 191.4 164 62.8
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 7.8e-47 191.0 164 63.4
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 7.8e-47 191.0 164 61.6
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 7.8e-47 191.0 164 61.6
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 1.0e-46 190.7 164 63.4
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 1.0e-46 190.7 164 63.4
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 1.0e-46 190.7 164 61.6
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 1.3e-46 190.3 164 61.6
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 1.3e-46 190.3 164 63.4
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 1.7e-46 189.9 164 63.4
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 1.7e-46 189.9 164 61.6
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 2.3e-46 189.5 164 62.2
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 2.3e-46 189.5 164 62.2
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 2.3e-46 189.5 164 62.2
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 2.3e-46 189.5 164 62.8
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 2.3e-46 189.5 165 62.4
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 3.0e-46 189.1 164 62.8
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 3.0e-46 189.1 164 62.8
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 3.0e-46 189.1 164 61.6
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 3.9e-46 188.7 164 62.2
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 5.1e-46 188.3 164 61.0
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 6.6e-46 188.0 164 61.6
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 6.6e-46 188.0 164 62.8
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 8.7e-46 187.6 164 62.2
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 8.7e-46 187.6 171 61.4
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.1e-45 187.2 164 62.2
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 1.1e-45 187.2 164 60.4
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.5e-45 186.8 164 62.8
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 1.5e-45 186.8 164 61.0
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 1.5e-45 186.8 164 62.2
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 1.5e-45 186.8 164 61.0
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.9e-45 186.4 165 60.6
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 1.9e-45 186.4 164 61.0
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 2.5e-45 186.0 164 61.0
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 2.5e-45 186.0 164 61.0
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 2.5e-45 186.0 164 60.4
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 2.5e-45 186.0 164 62.2
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 3.3e-45 185.7 164 61.6
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 3.3e-45 185.7 164 61.6
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 3.3e-45 185.7 164 61.6
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 3.3e-45 185.7 164 62.2
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.3e-45 185.3 164 62.8
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.3e-45 185.3 164 61.0
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.3e-45 185.3 164 61.0
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 4.3e-45 185.3 164 61.0
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 5.6e-45 184.9 164 61.6
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 5.6e-45 184.9 165 60.6
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 5.6e-45 184.9 164 62.2
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 7.3e-45 184.5 164 61.6
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 7.3e-45 184.5 164 62.8
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 9.6e-45 184.1 164 59.8
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 9.6e-45 184.1 164 60.4
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 9.6e-45 184.1 164 61.0
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 9.6e-45 184.1 164 61.6
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.2e-44 183.7 164 62.2
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 2.1e-44 183.0 164 59.8
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 2.1e-44 183.0 164 60.4
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 2.1e-44 183.0 164 61.0
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 2.8e-44 182.6 164 60.4
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 2.8e-44 182.6 164 60.4
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 4.7e-44 181.8 164 59.1
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 4.7e-44 181.8 164 59.8
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 6.2e-44 181.4 164 61.6
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 6.2e-44 181.4 164 59.8
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 8.1e-44 181.0 164 60.4
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 1.1e-43 180.6 192 54.2
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 1.1e-43 180.6 164 60.4
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 1.1e-43 180.6 164 59.8
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 1.8e-43 179.9 164 60.4
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 2.4e-43 179.5 172 57.6
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 2.4e-43 179.5 172 57.6
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 2.4e-43 179.5 164 61.6
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 3.1e-43 179.1 164 61.6
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 5.2e-43 178.3 152 67.1
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 9.0e-43 177.6 164 60.4
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 1.2e-42 177.2 164 59.1
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 1.5e-42 176.8 164 60.4
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 2.0e-42 176.4 152 66.4
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 2.0e-42 176.4 152 66.4
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 2.0e-42 176.4 164 59.1
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 4.4e-42 175.3 185 54.6
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 9.9e-42 174.1 164 58.5
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 9.9e-42 174.1 164 58.5
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 1.3e-41 173.7 164 59.8
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 1.7e-41 173.3 164 57.3
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 4.9e-41 171.8 153 60.1
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 1.1e-40 170.6 164 56.7
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 1.9e-40 169.9 183 53.6
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 2.4e-40 169.5 151 61.6
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 2.4e-40 169.5 164 56.1
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 4.2e-40 168.7 164 56.1
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 3.5e-39 165.6 158 57.6
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 7.8e-39 164.5 164 54.3
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 3.9e-38 162.2 205 46.8
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 3.3e-37 159.1 163 54.0
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 9.6e-37 157.5 164 53.7
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 1.6e-36 156.8 164 53.0
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 1.4e-35 153.7 164 52.4
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 2.0e-34 149.8 164 52.4
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 3.4e-34 149.1 164 50.6
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 5.8e-34 148.3 125 65.6
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 2.3e-30 136.3 164 47.0
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 1.5e-29 133.7 169 45.6
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 3.3e-29 132.5 166 47.0
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 2.4e-27 126.3 120 57.5
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 2.4e-27 126.3 120 58.3
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 2.6e-26 122.9 130 53.1
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.1e-24 117.5 108 58.3
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.1e-24 117.5 108 58.3
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 2.4e-24 116.3 86 67.4
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 9.3e-24 114.4 73 79.5
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 6.0e-23 111.7 140 48.6
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 3.9e-22 109.0 112 53.6
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 3.8e-17 92.4 157 37.6
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 1.1e-16 90.9 78 66.7
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 1.1e-13 80.9 50 78.0
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 7.4e-13 78.2 62 61.3
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 2.4e-11 73.2 101 46.5
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 7.2e-08 61.6 41 75.6
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 2.7e-07 59.7 32 78.1
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 2.3e-06 56.6 32 71.9
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 2.3e-06 56.6 32 71.9


User provided reference genes

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