Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39152 Brassica carinata HOM05D003220 ORTHO05D003944 1.9e-71 272.3 131 100.0
BcaC06g32854 Brassica carinata HOM05D003220 ORTHO05D003944 1.8e-21 106.3 64 85.9
BcaNung07242 Brassica carinata HOM05D003220 ORTHO05D003944 1.8e-21 106.3 64 85.9
C07p53830 Brassica napus HOM05D003220 ORTHO05D003944 1.8e-21 106.3 64 85.9
BraA03t14626Z Brassica rapa HOM05D003220 ORTHO05D003944 1.8e-21 106.3 64 85.9
Thhalv10025000m.g Eutrema salsugineum HOM05D003220 ORTHO05D003944 1.8e-21 106.3 64 85.9
Sp7g22820 Schrenkiella parvula HOM05D003220 ORTHO05D003944 1.8e-21 106.3 64 85.9
A03p55590 Brassica napus HOM05D003220 ORTHO05D003944 3.1e-21 105.5 64 85.9
AT4G24830 Arabidopsis thaliana HOM05D003220 ORTHO05D003944 4.0e-21 105.1 64 84.4
C01p20130 Brassica napus HOM05D003220 ORTHO05D003944 6.9e-21 104.4 64 84.4
BolC1t01942H Brassica oleracea HOM05D003220 ORTHO05D003944 6.9e-21 104.4 64 84.4
Carub.0007s1622 Capsella rubella HOM05D003220 ORTHO05D003944 9.0e-21 104.0 64 82.8
CARHR232250 Cardamine hirsuta HOM05D003220 ORTHO05D003944 9.0e-21 104.0 64 82.8
Aa31LG7G11010 Aethionema arabicum HOM05D003220 ORTHO05D003944 1.5e-20 103.2 64 81.2
THA.LOC104825013 Tarenaya hassleriana HOM05D003220 ORTHO05D003944 1.5e-20 103.2 64 81.2
A01p16140 Brassica napus HOM05D003220 ORTHO05D003944 4.5e-20 101.7 64 81.2
BraA01t01550Z Brassica rapa HOM05D003220 ORTHO05D003944 4.5e-20 101.7 64 81.2
THA.LOC104811595 Tarenaya hassleriana HOM05D003220 ORTHO05D003944 2.2e-19 99.4 64 78.1
AL7G28350 Arabidopsis lyrata HOM05D003220 ORTHO05D003944 6.5e-19 97.8 58 84.5
Medtr4g103680 Medicago truncatula HOM05D003220 ORTHO05D003944 6.5e-19 97.8 64 78.1
Duzib068G0624 Durio zibethinus HOM05D003220 ORTHO05D003944 3.2e-18 95.5 64 73.4
Medtr5g042880 Medicago truncatula HOM05D003220 ORTHO05D003944 4.2e-18 95.1 64 75.0
Glyma.05G046700 Glycine max HOM05D003220 ORTHO05D003944 5.5e-18 94.7 64 73.4
Glyma.05G046900 Glycine max HOM05D003220 ORTHO05D003944 5.5e-18 94.7 64 71.9
Manes.03G085300 Manihot esculenta HOM05D003220 ORTHO05D003944 7.1e-18 94.4 64 71.9
Dinv04868 Davidia involucrata HOM05D003220 ORTHO05D003944 9.3e-18 94.0 64 71.9
Glyma.17G128600 Glycine max HOM05D003220 ORTHO05D003944 9.3e-18 94.0 64 73.4
TWI38G0393 Tripterygium wilfordii HOM05D003220 ORTHO05D003944 9.3e-18 94.0 58 79.3
arahy.Tifrunner.gnm1.ann1.HUK63J Arachis hypogaea HOM05D003220 ORTHO05D003944 1.2e-17 93.6 64 73.4
arahy.Tifrunner.gnm1.ann1.VD0ABX Arachis hypogaea HOM05D003220 ORTHO05D003944 1.2e-17 93.6 64 73.4
EL10Ac2g04001 Beta vulgaris HOM05D003220 ORTHO05D003944 1.2e-17 93.6 64 75.0
Duzib205G1890 Durio zibethinus HOM05D003220 ORTHO05D003944 1.2e-17 93.6 64 71.9
ECA246G3064 Erigeron canadensis HOM05D003220 ORTHO05D003944 1.2e-17 93.6 64 73.4
QL10p004159 Quercus lobata HOM05D003220 ORTHO05D003944 1.2e-17 93.6 64 73.4
QL10p004209 Quercus lobata HOM05D003220 ORTHO05D003944 1.2e-17 93.6 64 73.4
Atru.chr9.1087 Acer truncatum HOM05D003220 ORTHO05D003944 1.6e-17 93.2 64 73.4
Rhsim08G0188400 Rhododendron simsii HOM05D003220 ORTHO05D003944 1.6e-17 93.2 58 75.9
Thecc.03G126500 Theobroma cacao HOM05D003220 ORTHO05D003944 1.6e-17 93.2 64 70.3
TAR629G1627 Trochodendron aralioides HOM05D003220 ORTHO05D003944 1.6e-17 93.2 58 79.3
VMungo1215G0590 Vigna mungo HOM05D003220 ORTHO05D003944 1.6e-17 93.2 64 71.9
GSVIVG01008510001 Vitis vinifera HOM05D003220 ORTHO05D003944 1.6e-17 93.2 64 73.4
Dinv11156 Davidia involucrata HOM05D003220 ORTHO05D003944 2.1e-17 92.8 64 70.3
HanXRQChr05g0155091 Helianthus annuus HOM05D003220 ORTHO05D003944 2.1e-17 92.8 64 71.9
PSO478G5055 Papaver somniferum HOM05D003220 ORTHO05D003944 2.1e-17 92.8 58 75.9
PSO782G5387 Papaver somniferum HOM05D003220 ORTHO05D003944 2.1e-17 92.8 58 75.9
Actinidia25590 Actinidia chinensis HOM05D003220 ORTHO05D003944 2.7e-17 92.4 64 71.9
Ca_00914_v3 Cicer arietinum L. HOM05D003220 ORTHO05D003944 2.7e-17 92.4 64 71.9
Ca_29978_v3 Cicer arietinum L. HOM05D003220 ORTHO05D003944 2.7e-17 92.4 64 71.9
Lj2g0018966 Lotus japonicus HOM05D003220 ORTHO05D003944 2.7e-17 92.4 64 70.3
TPR.G30011 Trifolium pratense HOM05D003220 ORTHO05D003944 2.7e-17 92.4 64 71.9
TWI63G1463 Tripterygium wilfordii HOM05D003220 ORTHO05D003944 2.7e-17 92.4 64 71.9
AUR62042443 Chenopodium quinoa HOM05D003220 ORTHO05D003944 3.5e-17 92.0 64 75.0
COL.COLO4_28080 Corchorus olitorius HOM05D003220 ORTHO05D003944 3.5e-17 92.0 64 68.8
Lj4g0002027 Lotus japonicus HOM05D003220 ORTHO05D003944 3.5e-17 92.0 64 68.8
CSS0036065 Camellia sinensis var. sinensis HOM05D003220 ORTHO05D003944 4.6e-17 91.7 64 70.3
AUR62009263 Chenopodium quinoa HOM05D003220 ORTHO05D003944 4.6e-17 91.7 64 73.4
DCAR_007481 Daucus carota HOM05D003220 ORTHO05D003944 4.6e-17 91.7 64 73.4
Eucgr.K02738 Eucalyptus grandis HOM05D003220 ORTHO05D003944 4.6e-17 91.7 64 70.3
Hma1.2p1_1439F.1_g283510 Hydrangea macrophylla HOM05D003220 ORTHO05D003944 4.6e-17 91.7 64 67.2
Peaxi162Scf00175g00120 Petunia axillaris HOM05D003220 ORTHO05D003944 4.6e-17 91.7 58 75.9
Phvul.003G209766 Phaseolus vulgaris HOM05D003220 ORTHO05D003944 4.6e-17 91.7 64 71.9
PGR004G0659 Punica granatum HOM05D003220 ORTHO05D003944 4.6e-17 91.7 64 71.9
CDE09G1413 Ceratophyllum demersum HOM05D003220 ORTHO05D003944 6.0e-17 91.3 58 75.9
Ciclev10019860m.g Citrus clementina HOM05D003220 ORTHO05D003944 6.0e-17 91.3 64 70.3
Nitab4.5_0000231g0280 Nicotiana tabacum HOM05D003220 ORTHO05D003944 6.0e-17 91.3 58 75.9
vmacro18315 Vaccinium macrocarpon HOM05D003220 ORTHO05D003944 6.0e-17 91.3 58 77.6
Ah.03g136360 Amaranthus hybridus HOM05D003220 ORTHO05D003944 7.9e-17 90.9 64 71.9
Phvul.003G209832 Phaseolus vulgaris HOM05D003220 ORTHO05D003944 7.9e-17 90.9 64 70.3
Hund19502 Selenicereus undatus HOM05D003220 ORTHO05D003944 7.9e-17 90.9 64 71.9
SGA_v2.0_scaffold334G49089 Striga asiatica HOM05D003220 ORTHO05D003944 7.9e-17 90.9 64 68.8
TAR371G0289 Trochodendron aralioides HOM05D003220 ORTHO05D003944 7.9e-17 90.9 64 70.3
HanXRQChr08g0229301 Helianthus annuus HOM05D003220 ORTHO05D003944 1.0e-16 90.5 58 74.1
Lsat_1_v5_gn_5_13561 Lactuca sativa HOM05D003220 ORTHO05D003944 1.0e-16 90.5 64 70.3
Oeu054655.1 Olea europaea HOM05D003220 ORTHO05D003944 1.0e-16 90.5 64 68.8
Hund03392 Selenicereus undatus HOM05D003220 ORTHO05D003944 1.0e-16 90.5 64 71.9
Solyc05g012270.3 Solanum lycopersicum HOM05D003220 ORTHO05D003944 1.0e-16 90.5 58 74.1
Sopen05g007100 Solanum pennellii HOM05D003220 ORTHO05D003944 1.0e-16 90.5 58 74.1
vmacro05131 Vaccinium macrocarpon HOM05D003220 ORTHO05D003944 1.0e-16 90.5 58 77.6
Lj9C477T17 Lonicera japonica HOM05D003220 ORTHO05D003944 1.3e-16 90.1 64 68.8
Nitab4.5_0001487g0130 Nicotiana tabacum HOM05D003220 ORTHO05D003944 1.3e-16 90.1 58 72.4
CAN.G1528.7 Capsicum annuum HOM05D003220 ORTHO05D003944 1.8e-16 89.7 58 75.9
CsaV3_1G000670 Cucumis sativus L. HOM05D003220 ORTHO05D003944 1.8e-16 89.7 64 70.3
Migut.N00934 Erythranthe guttata HOM05D003220 ORTHO05D003944 1.8e-16 89.7 58 74.1
ECA247G1256 Erigeron canadensis HOM05D003220 ORTHO05D003944 2.3e-16 89.4 64 67.2
ECA247G3880 Erigeron canadensis HOM05D003220 ORTHO05D003944 2.3e-16 89.4 64 67.2
Migut.D00060 Erythranthe guttata HOM05D003220 ORTHO05D003944 2.3e-16 89.4 58 74.1
PGSC0003DMG400028317 Solanum tuberosum HOM05D003220 ORTHO05D003944 2.3e-16 89.4 58 72.4
Sc10g0008710 Simmondsia chinensis HOM05D003220 ORTHO05D003944 3.9e-16 88.6 58 75.9
Cfa018844 Carpinus fangiana HOM05D003220 ORTHO05D003944 5.1e-16 88.2 58 70.7
Haze_07237 Corylus avellana HOM05D003220 ORTHO05D003944 5.1e-16 88.2 58 70.7
Lalb_Chr07g0183341 Lupinus albus HOM05D003220 ORTHO05D003944 5.1e-16 88.2 64 68.8
Lalb_Chr13g0297361 Lupinus albus HOM05D003220 ORTHO05D003944 5.1e-16 88.2 64 67.2
Aqoxy6G02806 Aquilegia oxysepala HOM05D003220 ORTHO05D003944 6.7e-16 87.8 64 65.6
Aqoxy7G03930 Aquilegia oxysepala HOM05D003220 ORTHO05D003944 6.7e-16 87.8 64 65.6
Glyma.05G236000 Glycine max HOM05D003220 ORTHO05D003944 6.7e-16 87.8 64 70.3
MBI08_g11776_MAGBIO Magnolia biondii HOM05D003220 ORTHO05D003944 6.7e-16 87.8 58 72.4
SGA_v2.0_scaffold198G41113 Striga asiatica HOM05D003220 ORTHO05D003944 6.7e-16 87.8 58 72.4
CANSAT80G2734 Cannabis sativa HOM05D003220 ORTHO05D003944 8.7e-16 87.4 58 70.7
Potri.008G020200 Populus trichocarpa HOM05D003220 ORTHO05D003944 1.1e-15 87.0 64 68.8
SGA_v2.0_scaffold376G50300 Striga asiatica HOM05D003220 ORTHO05D001798 1.1e-15 87.0 63 65.1
HPP92_001262 Vanilla planifolia HOM05D003220 ORTHO05D003944 1.1e-15 87.0 64 62.5
Duzib084G0962 Durio zibethinus HOM05D003220 ORTHO05D003944 1.5e-15 86.7 58 72.4
MELO3C026229.2 Cucumis melo HOM05D003220 ORTHO05D003944 1.9e-15 86.3 64 65.6
Gohir.A07G051900 Gossypium hirsutum HOM05D003220 ORTHO05D003944 1.9e-15 86.3 64 65.6
Gorai.001G059900 Gossypium raimondii HOM05D003220 ORTHO05D003944 1.9e-15 86.3 64 65.6
Os12g0235800 Oryza sativa ssp. japonica HOM05D003220 ORTHO05D003944 1.9e-15 86.3 64 67.2
Sed0014346 Sechium edule HOM05D003220 ORTHO05D003944 1.9e-15 86.3 64 65.6
Sed0017817 Sechium edule HOM05D003220 ORTHO05D003944 1.9e-15 86.3 64 65.6
Zm00001eb411740 Zea mays HOM05D003220 ORTHO05D003944 1.9e-15 86.3 64 65.6
MSTRG.18081 Avicennia marina HOM05D003220 ORTHO05D003944 2.5e-15 85.9 64 65.6
Sc10g0010420 Simmondsia chinensis HOM05D003220 ORTHO05D003944 2.5e-15 85.9 58 69.0
SalBow2G0412 Salvia bowleyana HOM05D003220 ORTHO05D003944 3.3e-15 85.5 64 67.2
CSS0002367 Camellia sinensis var. sinensis HOM05D003220 ORTHO05D003944 4.3e-15 85.1 58 67.2
ClCG06G017780 Citrullus lanatus HOM05D003220 ORTHO05D003944 4.3e-15 85.1 64 65.6
MD06G1144000 Malus domestica HOM05D003220 ORTHO05D003944 4.3e-15 85.1 64 62.5
MD06G1144100 Malus domestica HOM05D003220 ORTHO05D003944 4.3e-15 85.1 64 62.5
HPP92_001246 Vanilla planifolia HOM05D003220 ORTHO05D003944 4.3e-15 85.1 64 60.9
ATR1149G068 Amborella trichopoda HOM05D003220 ORTHO05D003944 5.7e-15 84.7 64 64.1
TPR.G26144 Trifolium pratense HOM05D003220 ORTHO05D003944 5.7e-15 84.7 64 59.4
ClCG03G003670 Citrullus lanatus HOM05D003220 ORTHO05D003944 7.4e-15 84.3 64 64.1
CsaV3_1G009540 Cucumis sativus L. HOM05D003220 ORTHO05D003944 7.4e-15 84.3 64 62.5
Medtr3g088970 Medicago truncatula HOM05D003220 ORTHO05D003944 7.4e-15 84.3 64 60.9
Prupe.7G058500 Prunus persica HOM05D003220 ORTHO05D003944 7.4e-15 84.3 64 62.5
CiPaw.12G040800 Carya illinoinensis HOM05D003220 ORTHO05D003944 9.6e-15 84.0 64 62.5
CsaV3_1G009560 Cucumis sativus L. HOM05D003220 ORTHO05D003944 9.6e-15 84.0 64 64.1
Gohir.D07G056400 Gossypium hirsutum HOM05D003220 ORTHO05D003944 9.6e-15 84.0 64 64.1
CiPaw.11G009400 Carya illinoinensis HOM05D003220 ORTHO05D003944 1.3e-14 83.6 58 67.2
Haze_24344 Corylus avellana HOM05D003220 ORTHO05D003944 1.6e-14 83.2 58 67.2
MD14G1159300 Malus domestica HOM05D003220 ORTHO05D003944 2.1e-14 82.8 64 60.9
Prupe.5G153100 Prunus persica HOM05D003220 ORTHO05D003944 2.1e-14 82.8 64 59.4
Psat5g139800 Pisum sativum HOM05D003220 ORTHO05D003944 2.8e-14 82.4 66 57.6
Potri.010G239000 Populus trichocarpa HOM05D003220 ORTHO05D003944 2.8e-14 82.4 64 65.6
FvH4_5g07910 Fragaria vesca HOM05D003220 ORTHO05D003944 3.7e-14 82.0 64 60.9
FAN04G2217 Fragaria x ananassa HOM05D003220 ORTHO05D003944 3.7e-14 82.0 64 60.9
FAN08G0954 Fragaria x ananassa HOM05D003220 ORTHO05D003944 3.7e-14 82.0 64 60.9
FAN13G0994 Fragaria x ananassa HOM05D003220 ORTHO05D003944 3.7e-14 82.0 64 60.9
FAN18G1033 Fragaria x ananassa HOM05D003220 ORTHO05D003944 4.8e-14 81.6 64 60.9
Lj1g0011796 Lotus japonicus HOM05D003220 ORTHO05D003944 4.8e-14 81.6 64 57.8
Lj1g0021098 Lotus japonicus HOM05D003220 ORTHO05D003944 4.8e-14 81.6 64 57.8
Pp3c1_33150 Physcomitrium patens HOM05D003220 ORTHO05D003944 4.8e-14 81.6 58 69.0
RcHm_v2.0_Chr7g0190471 Rosa chinensis HOM05D003220 ORTHO05D003944 4.8e-14 81.6 64 59.4
SEGI_40301 Sequoiadendron giganteum HOM05D003220 ORTHO05D003944 4.8e-14 81.6 58 65.5
MSTRG.21708 Avicennia marina HOM05D003220 ORTHO05D003944 6.3e-14 81.3 58 63.8
MELO3C002352.2 Cucumis melo HOM05D003220 ORTHO05D003944 6.3e-14 81.3 64 60.9
FAN08G0739 Fragaria x ananassa HOM05D003220 ORTHO05D003944 6.3e-14 81.3 64 59.4
Pp3c12_4480 Physcomitrium patens HOM05D003220 ORTHO05D003944 6.3e-14 81.3 58 69.0
RcHm_v2.0_Chr7g0190481 Rosa chinensis HOM05D003220 ORTHO05D003944 6.3e-14 81.3 64 57.8
Sed0000451 Sechium edule HOM05D003220 ORTHO05D003944 6.3e-14 81.3 64 64.1
ClCG03G003660 Citrullus lanatus HOM05D003220 ORTHO05D003944 8.2e-14 80.9 64 60.9
Lj1g0011038 Lotus japonicus HOM05D003220 ORTHO05D003944 8.2e-14 80.9 64 57.8
SEGI_19712 Sequoiadendron giganteum HOM05D003220 ORTHO05D003944 8.2e-14 80.9 58 65.5
Glyma.08G043400 Glycine max HOM05D003220 ORTHO05D003944 1.1e-13 80.5 58 70.7
FAN18G3924 Fragaria x ananassa HOM05D003220 ORTHO05D003944 1.4e-13 80.1 64 59.4
Lj6g0003196 Lotus japonicus HOM05D003220 ORTHO05D003944 1.8e-13 79.7 58 67.2
Cc00_g12840 Coffea canephora HOM05D003220 ORTHO05D003944 2.4e-13 79.3 64 60.9
CANSAT64G0212 Cannabis sativa HOM05D003220 ORTHO05D003944 4.1e-13 78.6 64 60.9
Lj1g0022826 Lotus japonicus HOM05D003220 ORTHO05D003944 5.3e-13 78.2 64 56.2
FvH4_5g30030 Fragaria vesca HOM05D003220 ORTHO05D003944 9.0e-13 77.4 64 57.8
CBR_g61477 Chara braunii HOM05D003220 ORTHO05D003944 1.5e-12 76.6 63 55.6
AagrBONN_evm.TU.Sc2ySwM_228.4817 Anthoceros agrestis HOM05D003220 ORTHO05D003944 3.4e-12 75.5 58 56.9
SMO356G0518 Selaginella moellendorffii HOM05D003220 ORTHO05D003944 3.4e-12 75.5 64 56.2
Mapoly0038s0028 Marchantia polymorpha HOM05D003220 ORTHO05D003944 5.0e-11 71.6 73 53.4
FvH4_5g06920 Fragaria vesca HOM05D003220 ORTHO05D003944 4.2e-10 68.6 75 46.7
Lalb_Chr06g0172311 Lupinus albus HOM05D003220 ORTHO05D003944 4.2e-10 68.6 64 57.8
Cre09.g416050 Chlamydomonas reinhardtii HOM05D003220 ORTHO05D003944 2.7e-09 65.9 58 55.2
PRCOL_00001450 Prasinoderma coloniale HOM05D003220 ORTHO05D003944 6.1e-09 64.7 58 55.2
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 7.9e-09 64.3 47 61.7
unitig_750.g28437 Utricularia gibba HOM05D003220 ORTHO05D003944 7.4e-07 57.8 62 50.0


User provided reference genes

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